IVF0019009 (gene) Melon (IVF77) v1

Overview
NameIVF0019009
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol protein
Locationchr05: 10848268 .. 10848471 (-)
RNA-Seq ExpressionIVF0019009
SyntenyIVF0019009
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTACGAGGCAGAGACGGAGGTTGAATGTGTAGCTGAGGCAGATCCGACGTCGAATGGAGGAGCGGTAAAGAAATTCGGCTGTCGCGAGGGCTTGACGGCAACGGTCAACCGAAGATGCCGACTGCAGGCGAGGTTTCGACGTGAGGCGTGGCTCGACGGAAAAAGAAGACGAGGAGACACAGAAGCGGCTACGCGCTGA

mRNA sequence

ATGGCGTACGAGGCAGAGACGGAGGTTGAATGTGTAGCTGAGGCAGATCCGACGTCGAATGGAGGAGCGGTAAAGAAATTCGGCTGTCGCGAGGGCTTGACGGCAACGGTCAACCGAAGATGCCGACTGCAGGCGAGGTTTCGACGTGAGGCGTGGCTCGACGGAAAAAGAAGACGAGGAGACACAGAAGCGGCTACGCGCTGA

Coding sequence (CDS)

ATGGCGTACGAGGCAGAGACGGAGGTTGAATGTGTAGCTGAGGCAGATCCGACGTCGAATGGAGGAGCGGTAAAGAAATTCGGCTGTCGCGAGGGCTTGACGGCAACGGTCAACCGAAGATGCCGACTGCAGGCGAGGTTTCGACGTGAGGCGTGGCTCGACGGAAAAAGAAGACGAGGAGACACAGAAGCGGCTACGCGCTGA

Protein sequence

MAYEAETEVECVAEADPTSNGGAVKKFGCREGLTATVNRRCRLQARFRREAWLDGKRRRGDTEAATR
Homology
BLAST of IVF0019009 vs. ExPASy TrEMBL
Match: A0A5A7SPT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00190 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.4e-15
Identity = 48/65 (73.85%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 3  YEAETEVECVAEADPTSNGGAVKKFGCREGLTATVNRRCRLQARFRREAWLDGKRRRGDT 62
          Y AETEVECVAEAD T   GA+ KFGCRE  TATVNRR RLQARFRREA LDGKRRRG+ 
Sbjct: 32 YGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEG 91

Query: 63 EAATR 68
          +   R
Sbjct: 92 DGGVR 96

BLAST of IVF0019009 vs. ExPASy TrEMBL
Match: A0A5A7U3Q7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001640 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 3   YEAETEVECVAEADPTSNGGAVKKFGCREGLTATVNRRCRLQARFRREAWLDGK 57
           YE+ETEV+CVAE DP S GGA+KKFG RE  T TV+RR RL+ARFRRE   DGK
Sbjct: 100 YESETEVKCVAEVDPMSYGGAMKKFGYREDSTTTVSRRRRLKARFRRETRFDGK 153

BLAST of IVF0019009 vs. ExPASy TrEMBL
Match: A0A5D3D0G0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2434G00020 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 3  YEAETEVECVAEADPTSNGGAVKKFGCREGLTATVNRRCRLQARFRREAWLDGK 57
          YE+ETEV+CVAE DPTS GGA+KKFG RE  T TV+R  RL+ RFRRE   DGK
Sbjct: 2  YESETEVKCVAEVDPTSYGGAMKKFGYREDSTTTVSRSRRLKVRFRRETRFDGK 55

BLAST of IVF0019009 vs. NCBI nr
Match: KAA0033202.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 4.28e-19
Identity = 48/65 (73.85%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 3  YEAETEVECVAEADPTSNGGAVKKFGCREGLTATVNRRCRLQARFRREAWLDGKRRRGDT 62
          Y AETEVECVAEAD T   GA+ KFGCRE  TATVNRR RLQARFRREA LDGKRRRG+ 
Sbjct: 32 YGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEG 91

Query: 63 EAATR 67
          +   R
Sbjct: 92 DGGVR 96

BLAST of IVF0019009 vs. NCBI nr
Match: KAA0048089.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 7.04e-14
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 3   YEAETEVECVAEADPTSNGGAVKKFGCREGLTATVNRRCRLQARFRREAWLDGK 56
           YE+ETEV+CVAE DP S GGA+KKFG RE  T TV+RR RL+ARFRRE   DGK
Sbjct: 100 YESETEVKCVAEVDPMSYGGAMKKFGYREDSTTTVSRRRRLKARFRRETRFDGK 153

BLAST of IVF0019009 vs. NCBI nr
Match: TYK17673.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 2.45e-13
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 3  YEAETEVECVAEADPTSNGGAVKKFGCREGLTATVNRRCRLQARFRREAWLDGK 56
          YE+ETEV+CVAE DPTS GGA+KKFG RE  T TV+R  RL+ RFRRE   DGK
Sbjct: 2  YESETEVKCVAEVDPTSYGGAMKKFGYREDSTTTVSRSRRLKVRFRRETRFDGK 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SPT66.4e-1573.85Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G001... [more]
A0A5A7U3Q71.6e-1070.37Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001640 P... [more]
A0A5D3D0G04.7e-1068.52Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2434G00020 P... [more]
Match NameE-valueIdentityDescription
KAA0033202.14.28e-1973.85gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis ... [more]
KAA0048089.17.04e-1470.37pol protein [Cucumis melo var. makuwa][more]
TYK17673.12.45e-1368.52pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019009.1IVF0019009.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding