IVF0018872 (gene) Melon (IVF77) v1

Overview


Name	IVF0018872
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 8631942 .. 8632349 (-)
RNA-Seq Expression	IVF0018872
Synteny	IVF0018872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGGAAAGAAGAGGTGCTAGAGGAAGAGTAAGTTCTACCTCTTCAAAGGCCAATCAACGATCTTCTTCTTCAAACTCTACACCTTTACCGATGAGTGCAGATCAATATGCTATGGATTTAGGGTTTACAAAGGTAAGCTTATCCAGATCAAGATCGTTCGGCATATGGATTGGATCTCTCACGGAGTCATTAACTTCACCTAGGCCTTTAGCCAAGCTCATCCGTCCTTCTGATGGAGTCGTTCAAATGAGGCCTCCTACCTCTCCTTCGTCTAATAGGAAGTCTTCTACACCTCCTCCTACAACTTATTCTCATGTTGTCACTCCCAATAACGGTTTGTGCCTAGACTTGAGATCAAAACTCACTTTCAAAAATTGGTTGTGGTCTATGATCCTATCATAG

mRNA sequence

ATGAGTTCGGAAAGAAGAGGTGCTAGAGGAAGAGTAAGTTCTACCTCTTCAAAGGCCAATCAACGATCTTCTTCTTCAAACTCTACACCTTTACCGATGAGTGCAGATCAATATGCTATGGATTTAGGGTTTACAAAGGTAAGCTTATCCAGATCAAGATCGTTCGGCATATGGATTGGATCTCTCACGGAGTCATTAACTTCACCTAGGCCTTTAGCCAAGCTCATCCGTCCTTCTGATGGAGTCGTTCAAATGAGGCCTCCTACCTCTCCTTCGTCTAATAGGAAGTCTTCTACACCTCCTCCTACAACTTATTCTCATGTTGTCACTCCCAATAACGGTTTGTGCCTAGACTTGAGATCAAAACTCACTTTCAAAAATTGGTTGTGGTCTATGATCCTATCATAG

Coding sequence (CDS)

ATGAGTTCGGAAAGAAGAGGTGCTAGAGGAAGAGTAAGTTCTACCTCTTCAAAGGCCAATCAACGATCTTCTTCTTCAAACTCTACACCTTTACCGATGAGTGCAGATCAATATGCTATGGATTTAGGGTTTACAAAGGTAAGCTTATCCAGATCAAGATCGTTCGGCATATGGATTGGATCTCTCACGGAGTCATTAACTTCACCTAGGCCTTTAGCCAAGCTCATCCGTCCTTCTGATGGAGTCGTTCAAATGAGGCCTCCTACCTCTCCTTCGTCTAATAGGAAGTCTTCTACACCTCCTCCTACAACTTATTCTCATGTTGTCACTCCCAATAACGGTTTGTGCCTAGACTTGAGATCAAAACTCACTTTCAAAAATTGGTTGTGGTCTATGATCCTATCATAG

Protein sequence

MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIGSLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLRSKLTFKNWLWSMILS

Homology

[Close]

BLAST of IVF0018872 vs. ExPASy TrEMBL
Match: A0A5A7T1X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00520 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG
Sbjct: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR
Sbjct: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120

Query: 121 SKLTFKNWLWSMILS 136
           SKLTFKNWLWSMILS
Sbjct: 121 SKLTFKNWLWSMILS 135

[Close]

BLAST of IVF0018872 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 81/112 (72.32%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSS++  ARGR +STSSK N+  SSSNS P P+SADQYAMDLGFT V+   SRSFGIWIG
Sbjct: 1   MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPN 113
           S TES T PRP   LIRPS GVVQMRPP SPSSNR+SST PPTTYS  VTP+
Sbjct: 61  SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESST-PPTTYSQAVTPD 111

[Close]

BLAST of IVF0018872 vs. ExPASy TrEMBL
Match: A0A5D3DEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00650 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-30
Identity = 89/135 (65.93%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSS++  AR R +STSSK N  SSSSNS P PMSADQYAMDL FT V+ SRSRSF I IG
Sbjct: 1   MSSKKESARVRTNSTSSKRNSPSSSSNSAPSPMSADQYAMDLRFTIVTRSRSRSFVIRIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           S TES T PRP A LIRPS  VVQMRPP SP SNR+SST PPTTYS  VTPN     +L+
Sbjct: 61  SPTESSTPPRPSANLIRPSGEVVQMRPPASPFSNRESST-PPTTYSQAVTPNKRFVPNLK 120

Query: 121 SKLTFKNWLWSMILS 136
           S L FK+    +ILS
Sbjct: 121 SNLIFKSLSLFIILS 134

[Close]

BLAST of IVF0018872 vs. ExPASy TrEMBL
Match: A0A5A7U8A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00530 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.7e-30
Identity = 87/123 (70.73%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MS E+  ARGR +STSSK N+ SSSSNSTP PMSADQYAMDLGFT V+ SRSRS  I IG
Sbjct: 1   MSLEKENARGRTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           S TES T P+P   LIRPS GVVQMR P SPSSNRKSST PPTTYS  VTP      D R
Sbjct: 61  SPTESSTPPKPSTNLIRPSGGVVQMRSPVSPSSNRKSST-PPTTYSQAVTP------DKR 116

Query: 121 SKL 124
           SKL
Sbjct: 121 SKL 116

[Close]

BLAST of IVF0018872 vs. ExPASy TrEMBL
Match: A0A5A7V4P4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00900 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 82/125 (65.60%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSSE+   RGR +STSSK N+ SSSSNS P PMSADQYAMDLGF  V+ SRSRS  I IG
Sbjct: 1   MSSEKGSVRGRTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFATVTRSRSRSSDIRIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           SLTES TSPRP   LIRP DGVVQMRP   PSSNR+SST P T YS  VTP+  +C   R
Sbjct: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESST-PLTAYSQAVTPDKAVCAKTR 120

Query: 121 SKLTF 126
            ++ F
Sbjct: 121 DQILF 124

[Close]

BLAST of IVF0018872 vs. NCBI nr
Match: KAA0037370.1 (hypothetical protein E6C27_scaffold278G00750 [Cucumis melo var. makuwa] >TYJ97539.1 hypothetical protein E5676_scaffold85G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (659), Expect = 1.77e-86
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG
Sbjct: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR
Sbjct: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120

Query: 121 SKLTFKNWLWSMILS 135
           SKLTFKNWLWSMILS
Sbjct: 121 SKLTFKNWLWSMILS 135

[Close]

BLAST of IVF0018872 vs. NCBI nr
Match: KAA0032939.1 (hypothetical protein E6C27_scaffold269G00120 [Cucumis melo var. makuwa] >TYK22024.1 hypothetical protein E5676_scaffold482G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 8.50e-41
Identity = 89/135 (65.93%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSS++  AR R +STSSK N  SSSSNS P PMSADQYAMDL FT V+ SRSRSF I IG
Sbjct: 1   MSSKKESARVRTNSTSSKRNSPSSSSNSAPSPMSADQYAMDLRFTIVTRSRSRSFVIRIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           S TES T PRP A LIRPS  VVQMRPP SP SNR+SSTPP TTYS  VTPN     +L+
Sbjct: 61  SPTESSTPPRPSANLIRPSGEVVQMRPPASPFSNRESSTPP-TTYSQAVTPNKRFVPNLK 120

Query: 121 SKLTFKNWLWSMILS 135
           S L FK+    +ILS
Sbjct: 121 SNLIFKSLSLFIILS 134

[Close]

BLAST of IVF0018872 vs. NCBI nr
Match: KAA0049709.1 (hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 7.20e-40
Identity = 87/123 (70.73%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MS E+  ARGR +STSSK N+ SSSSNSTP PMSADQYAMDLGFT V+ SRSRS  I IG
Sbjct: 1   MSLEKENARGRTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           S TES T P+P   LIRPS GVVQMR P SPSSNRKSSTPP TTYS  VTP      D R
Sbjct: 61  SPTESSTPPKPSTNLIRPSGGVVQMRSPVSPSSNRKSSTPP-TTYSQAVTP------DKR 116

Query: 121 SKL 123
           SKL
Sbjct: 121 SKL 116

[Close]

BLAST of IVF0018872 vs. NCBI nr
Match: KAA0060855.1 (hypothetical protein E6C27_scaffold137G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 1.27e-39
Identity = 82/125 (65.60%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSSE+   RGR +STSSK N+ SSSSNS P PMSADQYAMDLGF  V+ SRSRS  I IG
Sbjct: 1   MSSEKGSVRGRTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFATVTRSRSRSSDIRIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPNNGLCLDLR 120
           SLTES TSPRP   LIRP DGVVQMRP   PSSNR+SSTP  T YS  VTP+  +C   R
Sbjct: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPL-TAYSQAVTPDKAVCAKTR 120

Query: 121 SKLTF 125
            ++ F
Sbjct: 121 DQILF 124

[Close]

BLAST of IVF0018872 vs. NCBI nr
Match: KAA0056259.1 (hypothetical protein E6C27_scaffold226G00270 [Cucumis melo var. makuwa] >TYK05242.1 hypothetical protein E5676_scaffold108G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 3.58e-39
Identity = 82/112 (73.21%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MSSERRGARGRVSSTSSKANQRSSSSNSTPLPMSADQYAMDLGFTKVSLSRSRSFGIWIG 60
           MSSE+  ARGR +STSSK N+ SSSSN  P PMSADQYAMDL FT ++ SRSRS GI IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 61  SLTESLTSPRPLAKLIRPSDGVVQMRPPTSPSSNRKSSTPPPTTYSHVVTPN 112
           S TES T PRP A LIR SDGVVQMRP  SPSSNR+SSTPP TTYSH VTP+
Sbjct: 61  SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPP-TTYSHTVTPD 111

The following BLAST results are available for this feature:

BLAST of IVF0018872 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1X1	3.6e-65	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM80	1.3e-30	72.32	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3DEK9	2.2e-30	65.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8A0	3.7e-30	70.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V4P4	2.4e-29	65.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0018872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037370.1	1.77e-86	100.00	hypothetical protein E6C27_scaffold278G00750 [Cucumis melo var. makuwa] >TYJ9753...	[more]
KAA0032939.1	8.50e-41	65.93	hypothetical protein E6C27_scaffold269G00120 [Cucumis melo var. makuwa] >TYK2202...	[more]
KAA0049709.1	7.20e-40	70.73	hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]	[more]
KAA0060855.1	1.27e-39	65.60	hypothetical protein E6C27_scaffold137G00900 [Cucumis melo var. makuwa]	[more]
KAA0056259.1	3.58e-39	73.21	hypothetical protein E6C27_scaffold226G00270 [Cucumis melo var. makuwa] >TYK0524...	[more]

BLAST of IVF0018872 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018872.1	IVF0018872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding