IVF0018862 (gene) Melon (IVF77) v1

Overview
NameIVF0018862
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 13644984 .. 13645475 (+)
RNA-Seq ExpressionIVF0018862
SyntenyIVF0018862
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGCGGGGCAGCTTGGGCAGCCGTGCACGGCTCGGGGAAACGCGTATGGCTCGCATGCGTGCTCGGTTGGGGCGGCTCGACTCTTCACGCGACTTGCAGGGATACGCGTGTGGCTGGCCGCTGACGGCTCGGCTTCACACGGCTATGGAGGCACGGAACGGCTGGAGGCGAGCGTGGCTTGGGGTTTCGTGTTCGAGTACGAGCAACGAACCGTGATGGAAGGCAGACGACTAGCAACAACTTCCAGACGAAGGAGATCAAACGGAGAAAGCGGCAGCGAGGGCGGAACGATTCGGTGGGTGACTGCCACGACGAGGGTCGGCTCGGGTTTTCGGGTTCGGATACGAGCGACAAACCGTGACGGAAGGCAGAGGATTAACGACAACTTCCAGACGAGGGGAGATCGGACGGAGAAAGGGACGACGAAGGCAAAACGATCCGGCGGGGGCGAGGCAGCAGCGACGACGGCTGAACTAGGCGGCGGCTAG

mRNA sequence

ATGCACGCGGGGCAGCTTGGGCAGCCGTGCACGGCTCGGGGAAACGCGTATGGCTCGCATGCGTGCTCGGTTGGGGCGGCTCGACTCTTCACGCGACTTGCAGGGATACGCGTGTGGCTGGCCGCTGACGGCTCGGCTTCACACGGCTATGGAGGCACGGAACGGCTGGAGGCGAGCGTGGCTTGGGGTTTCGTGTTCGAGTACGAGCAACGAACCGTGATGGAAGGCAGACGACTAGCAACAACTTCCAGACGAAGGAGATCAAACGGAGAAAGCGGCAGCGAGGGCGGAACGATTCGGTGGGTGACTGCCACGACGAGGGTCGGCTCGGGTTTTCGGGTTCGGATACGAGCGACAAACCGTGACGGAAGGCAGAGGATTAACGACAACTTCCAGACGAGGGGAGATCGGACGGAGAAAGGGACGACGAAGGCAAAACGATCCGGCGGGGGCGAGGCAGCAGCGACGACGGCTGAACTAGGCGGCGGCTAG

Coding sequence (CDS)

ATGCACGCGGGGCAGCTTGGGCAGCCGTGCACGGCTCGGGGAAACGCGTATGGCTCGCATGCGTGCTCGGTTGGGGCGGCTCGACTCTTCACGCGACTTGCAGGGATACGCGTGTGGCTGGCCGCTGACGGCTCGGCTTCACACGGCTATGGAGGCACGGAACGGCTGGAGGCGAGCGTGGCTTGGGGTTTCGTGTTCGAGTACGAGCAACGAACCGTGATGGAAGGCAGACGACTAGCAACAACTTCCAGACGAAGGAGATCAAACGGAGAAAGCGGCAGCGAGGGCGGAACGATTCGGTGGGTGACTGCCACGACGAGGGTCGGCTCGGGTTTTCGGGTTCGGATACGAGCGACAAACCGTGACGGAAGGCAGAGGATTAACGACAACTTCCAGACGAGGGGAGATCGGACGGAGAAAGGGACGACGAAGGCAAAACGATCCGGCGGGGGCGAGGCAGCAGCGACGACGGCTGAACTAGGCGGCGGCTAG

Protein sequence

MHAGQLGQPCTARGNAYGSHACSVGAARLFTRLAGIRVWLAADGSASHGYGGTERLEASVAWGFVFEYEQRTVMEGRRLATTSRRRRSNGESGSEGGTIRWVTATTRVGSGFRVRIRATNRDGRQRINDNFQTRGDRTEKGTTKAKRSGGGEAAATTAELGGG
Homology
[Close]
BLAST of IVF0018862 vs. ExPASy TrEMBL
Match: A0A5D3B910 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1159G00080 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 8   QPCTARGNAYGSHACSVGAARL-FTRLAGIRVWLAADGSASHGYG------GTERLEASV 67
           Q  TARGN + SHA S G + +    LAG+RV LAA GS S GYG      G +RLEA V
Sbjct: 54  QTHTARGNVHDSHASSTGGSSVPRVPLAGMRVRLAAGGSTSRGYGGVRMARGAKRLEAGV 113

Query: 68  AWGFVFEYEQRTVMEGRRLATTSRRRRSNGE 92
           A    F YE+ TV EGRR  TTSRRR S+ E
Sbjct: 114 AQVSGFGYERWTVTEGRRPMTTSRRRTSDRE 144

[Close]
BLAST of IVF0018862 vs. NCBI nr
Match: KAA0032400.1 (hypothetical protein E6C27_scaffold219G002780 [Cucumis melo var. makuwa] >TYJ96350.1 hypothetical protein E5676_scaffold1159G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.02e-10
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 8   QPCTARGNAYGSHACSVGAARL-FTRLAGIRVWLAADGSASHGYGGT------ERLEASV 67
           Q  TARGN + SHA S G + +    LAG+RV LAA GS S GYGG       +RLEA V
Sbjct: 54  QTHTARGNVHDSHASSTGGSSVPRVPLAGMRVRLAAGGSTSRGYGGVRMARGAKRLEAGV 113

Query: 68  AWGFVFEYEQRTVMEGRRLATTSRRRRSNGE 91
           A    F YE+ TV EGRR  TTSRRR S+ E
Sbjct: 114 AQVSGFGYERWTVTEGRRPMTTSRRRTSDRE 144

[Close]
BLAST of IVF0018862 vs. NCBI nr
Match: TYK08043.1 (hypothetical protein E5676_scaffold265G001890 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 1.96e-05
Identity = 37/67 (55.22%), Postives = 41/67 (61.19%), Query Frame = 0 

Query: 36 IRVWLAADGSASHGYGGT------ERLEASVAWGFVFEYEQRTVMEGRRLATTSRRRRSN 95
          + V LAA G AS GYGG       ERLEAS A    F Y++ TV EGRRLATT RRRRS+
Sbjct: 1  MHVRLAAGGFASRGYGGARTAGGAERLEASAARVSRFGYKRWTVTEGRRLATTFRRRRSD 60

[Close]
BLAST of IVF0018862 vs. NCBI nr
Match: ADN34188.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 51.6 bits (122), Expect = 5.04e-05
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 36 IRVWLAADGSASHGYGG------TERLEASVAWGFVFEYEQRTVMEGRRLATTSRRRRSN 89
          + V LAA G AS GYGG      TERLEAS A    F Y++ TV EGRRLA T RRRRS+
Sbjct: 1  MHVRLAAGGFASRGYGGARTAGGTERLEASAARVSRFGYKRWTVTEGRRLAMTFRRRRSD 60

The following BLAST results are available for this feature:
BLAST of IVF0018862 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018862 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3B9104.4e-0953.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0018862 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032400.13.02e-1053.85hypothetical protein E6C27_scaffold219G002780 [Cucumis melo var. makuwa] >TYJ963... [more]
TYK08043.11.96e-0555.22hypothetical protein E5676_scaffold265G001890 [Cucumis melo var. makuwa][more]
ADN34188.15.04e-0558.33hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of IVF0018862 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018862.1IVF0018862.1mRNA