IVF0018762 (gene) Melon (IVF77) v1

Overview
NameIVF0018762
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08: 16404579 .. 16404945 (-)
RNA-Seq ExpressionIVF0018762
SyntenyIVF0018762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTTCCGTATCATCTGCTTTGCTCTTATATTTGCAGGTTCGTTTCCGTTAATTTCTTTCACAAATACAATATTATCATGTGTTAAAAAATCAAAAAATCATGAGACATATTAGATTGCTAATTTGTATGGTTATGTTTTTATGCTTTTGTATAGTTGCATTGAACTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTGTTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

mRNA sequence

ATGGCTTCTTTCCGTATCATCTGCTTTGCTCTTATATTTGCAGTTGCATTGAACTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTGTTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Coding sequence (CDS)

ATGGCTTCTTTCCGTATCATCTGCTTTGCTCTTATATTTGCAGTTGCATTGAACTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTGTTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Protein sequence

MASFRIICFALIFAVALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPSQTIYACYCFFDCGDQKN
Homology
BLAST of IVF0018762 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MASFRIICFALIFAVALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCI 60
          M S RIICFALIFAVAL L  QDVSAA+RCQDVLYNTGC+LNDCGKKCWEKHHTVSHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

BLAST of IVF0018762 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.2e-24
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 6  IICFALIFAVALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPS 65
          I+  AL  AVA+ LVPQ   A +RCQD LY+TGC+L DCG+KCWEKHH  SHQCIPT+P 
Sbjct: 9  ILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIPTDPG 68

Query: 66 QTIYACYCFFDCG 79
          QTIYACYCF++CG
Sbjct: 69 QTIYACYCFYNCG 81

BLAST of IVF0018762 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 6  IICFALIFAVALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPS 65
          I+   LI AVA+  +PQ   AA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT+P 
Sbjct: 9  ILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPD 68

Query: 66 QTIYACYCFFDCG 79
          QTIYACYCF+ CG
Sbjct: 69 QTIYACYCFYTCG 80

BLAST of IVF0018762 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 1  MASFRIICFALIFAVALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCI 60
          ++SFR+    +IFAV++ LVPQ  SA K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

BLAST of IVF0018762 vs. ExPASy TrEMBL
Match: A0A6J5VH03 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.3e-13
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 13 FAVALN--LVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPSQTIYA 72
          FAVALN   VPQ   A KRC++ LY++GC+L DCGKKCW+KHH   H C+  N +Q  YA
Sbjct: 28 FAVALNNQNVPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYA 87

Query: 73 CYCFFDC 78
          CYC F+C
Sbjct: 88 CYCMFNC 92

BLAST of IVF0018762 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 3.99e-42
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 16 ALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPSQTIYACYCFF 75
          AL L  QDVSAA+RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCIPTNPSQTIYACYCFF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 76 DCGDQKN 82
          DCG QKN
Sbjct: 61 DCGGQKN 67

BLAST of IVF0018762 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 8.94e-33
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 6  IICFALIFAVALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPS 65
          I+  AL  AVA+ LVPQ   A +RCQD LY+TGC+L DCG+KCWEKHH  SHQCIPT+P 
Sbjct: 9  ILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIPTDPG 68

Query: 66 QTIYACYCFFDCG 78
          QTIYACYCF++CG
Sbjct: 69 QTIYACYCFYNCG 81

BLAST of IVF0018762 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 110 bits (276), Expect = 9.20e-30
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 6  IICFALIFAVALNLVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPS 65
          I+   LI AVA+  +PQ   AA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT+P 
Sbjct: 9  ILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPD 68

Query: 66 QTIYACYCFFDCG 78
          QTIYACYCF+ CG
Sbjct: 69 QTIYACYCFYTCG 80

BLAST of IVF0018762 vs. NCBI nr
Match: CAB4286917.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 83.2 bits (204), Expect = 1.19e-18
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 13 FAVALNL--VPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPSQTIYA 72
          FAVALN   VPQ   A KRC++ LY++GC+L DCGKKCW+KHH   H C+  N +Q  YA
Sbjct: 28 FAVALNNQNVPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYA 87

Query: 73 CYCFFDC 77
          CYC F+C
Sbjct: 88 CYCMFNC 92

BLAST of IVF0018762 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 80.5 bits (197), Expect = 2.34e-17
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 20  VPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTVSHQCIPTNPSQTIYACYCFFDC 77
           VPQ   A KRC + LY +GC+L+DCGKKCWEKHH   ++CI  N +QT YACYC F+C
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2R34.3e-3790.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A5A7THQ79.2e-2468.49S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0LVZ52.5e-2165.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A0A0KYP73.3e-1350.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A6J5VH034.3e-1358.21Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 S... [more]
Match NameE-valueIdentityDescription
KAE8649772.13.99e-4289.55hypothetical protein Csa_012405, partial [Cucumis sativus][more]
KAA0042348.18.94e-3368.49S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KGN64987.19.20e-3065.75hypothetical protein Csa_022748 [Cucumis sativus][more]
CAB4286917.11.19e-1858.21unnamed protein product [Prunus armeniaca][more]
BBH07492.12.34e-1760.34hypothetical protein Prudu_019451 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 26..77
e-value: 1.5E-6
score: 28.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018762.2IVF0018762.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0031640 killing of cells of other organism