IVF0018684 (gene) Melon (IVF77) v1

Overview


Name	IVF0018684
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr09: 14813861 .. 14815307 (+)
RNA-Seq Expression	IVF0018684
Synteny	IVF0018684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGCTTGGGAGGCAACTTGGCTCAGACTCGGCTCGGCTCGGCTCGACTCAGTTCTCGACTCAGCTCGGCTCACGGCTTGGTTCAGCTCAGCTTGCAACTCTGTCTGGCTCGTTTCGTGGCTCAGTTCACGGGTCGGATAAAAAGAGAGGATGGCTCGGGTCGGGTTAACTTGGTTGACTCAGGTCGGGTCAACTTGGTTGGCTCGGGTATGGTGTGCGGCGCGAAGAAGGTCGAAGGTGAAAGAAGAAAGCACGACGACGGCGACGACTAGGCGTACGCAACTGGACGAGGTCGGGGCGATCAATGGCCTTCGGATCTATGGATGGAAAAGGAAGACAGAAGGATTGGAGGCGGCGACGAATTCGAACGTACGAACGGAAGAAGTCGAACGATGGGCGGCTAGGCTTCAACTATTGCGGACGAACGAGGCAGCTCAGGTGGGGGCGTCGGAGAACCGCAGCTGCTGGTCGGCATTGAACGGAGAAGAAGAAGAAAAAGAAGATTGAGGAAGGTGGGGGCAGATGGCTTGCGCGGGCGAAGGAAGAAGGAGAAAGAGAAACGGTGGGGGGGAGAGGAGGGAGGAGGGGGGAGGGGTTGGCGGCGCGCGCGGGAGGGGGGTTCTTCTTCTCTTTCTTCTGCTGCTTCTTCTCTTTCTTCTGCTTCTTCTTCTTTTTCTTCTGCTTCTTCTGCTCCTTCTGCTCCTTCTTCTCCTTCTGCTCCTTCTTCTCCTTCTTCTCCTTCTTCTCCTTCTTCTCCTTCTTCTCCTTCTCCTCCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTCCTTCTCCTTCTCCTCCTTCTCCTTCTTCTCCTTCTCCTTCTTCTCCTTCTCCTTCTTCTCCTTCTCCTTCTTCTCCTTCTCCTTCTTCTCCTTCTCCTTCTTCTTCTCCTTCTTCTCCTTCTCCTTCTTCTCCTTCTCCTTCTTCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTTCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTTCTTCTCCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCAACCGACAGCCAACTGTCGTCCCCTCCGATCTTCATTCCTCTTCCATTTAGCGTACCGCGCACCGTCACTTCCGTCCATGCCTCGTACGTCGTCAGCCACGTAATAGCGACGCGAAGACATCCAGCGATGGCCCATCTCCGACCGTTTTTCTTCTTCGTTTCACGTGCACGACCAACCGTCGGCCGTCTCTGCCTCGGTCGTACAGTGTCAGCCACCGTGCATCTTGTCATCGACAAAGGTAACCATGTAGTCTTCTCCGCTCACCGCCATCGTACGCTCGAAAACTAG

mRNA sequence

ATGGCTTGGCTTGGGAGGCAACTTGGCTCAGACTCGGCTCGGCTCGGCTCGACTCAGTTCTCGACTCAGCTCGGCTCACGGCTTGGTTCAGCTCAGCTTGCAACTCTGTCTGGCTCGTTTCGTGGCTCAGTTCACGGGTCGGATAAAAAGAGAGGATGGCTCGGAAGGTCGAAGGTGAAAGAAGAAAGCACGACGACGGCGACGACTAGGCGTACGCAACTGGACGAGGTCGGGGCGATCAATGGCCTTCGGATCTATGGATGGAAAAGGAAGACAGAAGGATTGGAGGCGGCGACGAATTCGAACGTACGAACGGAAGAAGTCGAACGATGGGCGGCTAGGCTTCAACTATTGCGGACGAACGAGGCAGCTCAGGTGGGGGCGTCGGAGAACCGCAGCTGCTGGAAGGTGGGGGCAGATGGCTTGCGCGGGCGAAGGAAGAAGGAGAAAGAGAAACGCCAACTGTCGTCCCCTCCGATCTTCATTCCTCTTCCATTTAGCGTACCGCGCACCGTCACTTCCGTCCATGCCTCGTACGTCGTCAGCCACGTAATAGCGACGCGAAGACATCCAGCGATGGCCCATCTCCGACCGTTTTTCTTCTTCGTTTCACGTGCACGACCAACCGTCGGCCGTCTCTGCCTCGGTCGTACAGTGTCAGCCACCGTGCATCTTGTCATCGACAAAGGTAACCATGTAGTCTTCTCCGCTCACCGCCATCGTACGCTCGAAAACTAG

Coding sequence (CDS)

ATGGCTTGGCTTGGGAGGCAACTTGGCTCAGACTCGGCTCGGCTCGGCTCGACTCAGTTCTCGACTCAGCTCGGCTCACGGCTTGGTTCAGCTCAGCTTGCAACTCTGTCTGGCTCGTTTCGTGGCTCAGTTCACGGGTCGGATAAAAAGAGAGGATGGCTCGGAAGGTCGAAGGTGAAAGAAGAAAGCACGACGACGGCGACGACTAGGCGTACGCAACTGGACGAGGTCGGGGCGATCAATGGCCTTCGGATCTATGGATGGAAAAGGAAGACAGAAGGATTGGAGGCGGCGACGAATTCGAACGTACGAACGGAAGAAGTCGAACGATGGGCGGCTAGGCTTCAACTATTGCGGACGAACGAGGCAGCTCAGGTGGGGGCGTCGGAGAACCGCAGCTGCTGGAAGGTGGGGGCAGATGGCTTGCGCGGGCGAAGGAAGAAGGAGAAAGAGAAACGCCAACTGTCGTCCCCTCCGATCTTCATTCCTCTTCCATTTAGCGTACCGCGCACCGTCACTTCCGTCCATGCCTCGTACGTCGTCAGCCACGTAATAGCGACGCGAAGACATCCAGCGATGGCCCATCTCCGACCGTTTTTCTTCTTCGTTTCACGTGCACGACCAACCGTCGGCCGTCTCTGCCTCGGTCGTACAGTGTCAGCCACCGTGCATCTTGTCATCGACAAAGGTAACCATGTAGTCTTCTCCGCTCACCGCCATCGTACGCTCGAAAACTAG

Protein sequence

MAWLGRQLGSDSARLGSTQFSTQLGSRLGSAQLATLSGSFRGSVHGSDKKRGWLGRSKVKEESTTTATTRRTQLDEVGAINGLRIYGWKRKTEGLEAATNSNVRTEEVERWAARLQLLRTNEAAQVGASENRSCWKVGADGLRGRRKKEKEKRQLSSPPIFIPLPFSVPRTVTSVHASYVVSHVIATRRHPAMAHLRPFFFFVSRARPTVGRLCLGRTVSATVHLVIDKGNHVVFSAHRHRTLEN

Homology

[Close]

BLAST of IVF0018684 vs. ExPASy TrEMBL
Match: A0A5A7VII9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001190 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-22
Identity = 60/80 (75.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 151 EKRQLSSPPIFIPLPFSVPRTVTSVHASYVVSHVIATRRHPAMAHLRPFFFFVSRARPTV 210
           ++ +L SPPI IPLPFS P T   + ASY VS VIATRRHPAMAHL PFFFFVSRARPTV
Sbjct: 324 QESRLPSPPISIPLPFSTPCTTAFISASYDVSRVIATRRHPAMAHLWPFFFFVSRARPTV 383

Query: 211 GRLCLGRTVSATVHLVIDKG 231
             LCLGR VSA VHLVIDKG
Sbjct: 384 DCLCLGRVVSAIVHLVIDKG 403

[Close]

BLAST of IVF0018684 vs. ExPASy TrEMBL
Match: A0A5A7U149 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00930 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 33/55 (60.00%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 183 HVIATRRHPAMAHLRPFFFFVSRARPTVGRLCLGRTVSATVHLVIDKGNHVVFSA 238
           H+I   +HPA A LRP FFFV  ARPT+ RLCLGR VS  VHL   K    VFSA
Sbjct: 52  HIIDV-KHPAAARLRPSFFFVPHARPTIDRLCLGRAVSTVVHLASTKVTGQVFSA 105

[Close]

BLAST of IVF0018684 vs. ExPASy TrEMBL
Match: A0A5A7TY13 (Putative 22 kDa kafirin cluster OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001780 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 183  HVIATRRHPAMA--------HLRPFFFFVSRARPTVGRLCLGRTVSATVHLVIDK 230
            H+   RR P  +        HL+P F F+ R RPT+ RLCLGRTVSA V LVIDK
Sbjct: 1071 HLCLVRRQPRNSDAKATCNDHLQPLFSFIPRVRPTINRLCLGRTVSAIVRLVIDK 1125

[Close]

BLAST of IVF0018684 vs. NCBI nr
Match: KAA0068152.1 (hypothetical protein E6C27_scaffold238G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 1.25e-26
Identity = 60/80 (75.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 151 EKRQLSSPPIFIPLPFSVPRTVTSVHASYVVSHVIATRRHPAMAHLRPFFFFVSRARPTV 210
           ++ +L SPPI IPLPFS P T   + ASY VS VIATRRHPAMAHL PFFFFVSRARPTV
Sbjct: 324 QESRLPSPPISIPLPFSTPCTTAFISASYDVSRVIATRRHPAMAHLWPFFFFVSRARPTV 383

Query: 211 GRLCLGRTVSATVHLVIDKG 230
             LCLGR VSA VHLVIDKG
Sbjct: 384 DCLCLGRVVSAIVHLVIDKG 403

[Close]

BLAST of IVF0018684 vs. NCBI nr
Match: KAA0047209.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.68e-07
Identity = 33/55 (60.00%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 183 HVIATRRHPAMAHLRPFFFFVSRARPTVGRLCLGRTVSATVHLVIDKGNHVVFSA 237
           H+I  + HPA A LRP FFFV  ARPT+ RLCLGR VS  VHL   K    VFSA
Sbjct: 52  HIIDVK-HPAAARLRPSFFFVPHARPTIDRLCLGRAVSTVVHLASTKVTGQVFSA 105

[Close]

BLAST of IVF0018684 vs. NCBI nr
Match: KAA0048100.1 (putative 22 kDa kafirin cluster [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 2.48e-05
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 183  HVIATRRHPAMA--------HLRPFFFFVSRARPTVGRLCLGRTVSATVHLVIDK 229
            H+   RR P  +        HL+P F F+ R RPT+ RLCLGRTVSA V LVIDK
Sbjct: 1071 HLCLVRRQPRNSDAKATCNDHLQPLFSFIPRVRPTINRLCLGRTVSAIVRLVIDK 1125

The following BLAST results are available for this feature:

BLAST of IVF0018684 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VII9	1.4e-22	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U149	2.3e-06	60.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83...	[more]
A0A5A7TY13	2.2e-04	52.73	Putative 22 kDa kafirin cluster OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0018684 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068152.1	1.25e-26	75.00	hypothetical protein E6C27_scaffold238G001190 [Cucumis melo var. makuwa]	[more]
KAA0047209.1	1.68e-07	60.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048100.1	2.48e-05	52.73	putative 22 kDa kafirin cluster [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018684 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018684.1	IVF0018684.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity