IVF0018681 (gene) Melon (IVF77) v1

Overview
NameIVF0018681
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDDB1- and CUL4-associated factor 13
Locationchr01: 3465091 .. 3465354 (+)
RNA-Seq ExpressionIVF0018681
SyntenyIVF0018681
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCATGCTTCTTGGATTCCGCCTACAGTTGGGGTGTGGAAGCTCAATATCAACGCCTCGTGGTTGGACAATGTTGGGGCGAGTGGGGTTGGTTGGGTTGTTCTTGACCTCTTGAGGTCTCTCATCTCTGCGGGTTGCATACCCGTCTTGTCAAAGGGCTCAAGTCTATGTTTTCTCAATTTCCTAGTGACATTCCTTTTCTCTTTGTGGCTGAGTTTGATTGTTTTGATCATGTTTCTGTCATTGGGCTTAGTGTTGTAA

mRNA sequence

ATGAGTCATGCTTCTTGGATTCCGCCTACAGTTGGGGTGTGGAAGCTCAATATCAACGCCTCGTGGTTGGACAATGTTGGGGCGAGTGGGGTTGGTTGGGTTGTTCTTGACCTCTTGAGGTCTCTCATCTCTGCGGGTTGCATACCCGTCTTGTCAAAGGGCTCAAGTCTATGTTTTCTCAATTTCCTAGTGACATTCCTTTTCTCTTTGTGGCTGAGTTTGATTGTTTTGATCATGTTTCTGTCATTGGGCTTAGTGTTGTAA

Coding sequence (CDS)

ATGAGTCATGCTTCTTGGATTCCGCCTACAGTTGGGGTGTGGAAGCTCAATATCAACGCCTCGTGGTTGGACAATGTTGGGGCGAGTGGGGTTGGTTGGGTTGTTCTTGACCTCTTGAGGTCTCTCATCTCTGCGGGTTGCATACCCGTCTTGTCAAAGGGCTCAAGTCTATGTTTTCTCAATTTCCTAGTGACATTCCTTTTCTCTTTGTGGCTGAGTTTGATTGTTTTGATCATGTTTCTGTCATTGGGCTTAGTGTTGTAA

Protein sequence

MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSLISAGCIPVLSKGSSLCFLNFLVTFLFSLWLSLIVLIMFLSLGLVL
Homology
[Close]
BLAST of IVF0018681 vs. ExPASy TrEMBL
Match: A0A5D3DDM7 (DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00210 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1   MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSL 43
           MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLL  +
Sbjct: 496 MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLSDI 537

[Close]
BLAST of IVF0018681 vs. ExPASy TrEMBL
Match: A0A5A7UV83 (DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00250 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1   MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSL 43
           MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLL  +
Sbjct: 538 MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLSDI 579

[Close]
BLAST of IVF0018681 vs. ExPASy TrEMBL
Match: A0A5D3E1D7 (Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00380 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 2   SHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSLISAGCIPVLSKG 55
           SH+ W  P VGVWKLN +A W+D+    G+GW+V D + S I  GC   + KG
Sbjct: 51  SHSCWSLPIVGVWKLNFDAYWVDSPSCGGIGWLVCDSVGSPILVGCEKSVIKG 103

[Close]
BLAST of IVF0018681 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 6   WIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSLISAGCIPVLSKGSSL 58
           W PP   +WKLN++A+W+D++ A G+GW+V D     I A C+  LS+  +L
Sbjct: 78  WTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTL 129

[Close]
BLAST of IVF0018681 vs. NCBI nr
Match: TYK21623.1 (DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.35e-18
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1   MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSL 42
           MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLL  +
Sbjct: 496 MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLSDI 537

[Close]
BLAST of IVF0018681 vs. NCBI nr
Match: KAA0059118.1 (DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.39e-18
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1   MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSL 42
           MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLL  +
Sbjct: 538 MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLSDI 579

[Close]
BLAST of IVF0018681 vs. NCBI nr
Match: KAA0043266.1 (transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK29330.1 transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.97e-07
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 2   SHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSLISAGCIPVLSKG 54
           SH+ W  P VGVWKLN +A W+D+    G+GW+V D + S I  GC   + KG
Sbjct: 51  SHSCWSLPIVGVWKLNFDAYWVDSPSCGGIGWLVCDSVGSPILVGCEKSVIKG 103

[Close]
BLAST of IVF0018681 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 1.75e-06
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 6   WIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSLISAGCIPVLSKGSSL 57
           W PP   +WKLN++A+W+D++ A G+GW+V D     I A C+  LS+  +L
Sbjct: 78  WTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTL 129

[Close]
BLAST of IVF0018681 vs. NCBI nr
Match: KAE8653679.1 (hypothetical protein Csa_007320, partial [Cucumis sativus])

HSP 1 Score: 52.0 bits (123), Expect = 4.82e-06
Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 0 

Query: 1  MSHASWIPPTVGVWKLNINASWLDNVGASGVGWVVLDLLRSLISAGC 47
          +SH  W  P V  WKL  +ASW+D+ G  G+GW+V D   S +  GC
Sbjct: 5  LSHLCWSLPVVRAWKLYFDASWVDSAGYGGIGWLVRDSAGSPVLVGC 51

The following BLAST results are available for this feature:
BLAST of IVF0018681 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018681 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DDM71.8e-1492.86DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7UV831.8e-1492.86DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3E1D71.6e-0547.17Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucu... [more]
A0A6J1D4B61.0e-0442.31uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
BLAST of IVF0018681 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK21623.15.35e-1892.86DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa][more]
KAA0059118.15.39e-1892.86DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa][more]
KAA0043266.11.97e-0747.17transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumi... [more]
XP_022148549.11.75e-0642.31uncharacterized protein LOC111017181 [Momordica charantia][more]
KAE8653679.14.82e-0644.68hypothetical protein Csa_007320, partial [Cucumis sativus][more]
BLAST of IVF0018681 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018681.1IVF0018681.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus