IVF0018639 (gene) Melon (IVF77) v1

Overview


Name	IVF0018639
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like
Location	chr08: 20306721 .. 20307017 (+)
RNA-Seq Expression	IVF0018639
Synteny	IVF0018639

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGATGATCCTATCGACTTTGACAGCACTGAAGATGAAGATGATGATTCTATCGACTTTGACTGCACTGAACATGAAGATGATGATCTTATCGGCTGCGACCTCTTTGAAGATGAAGATGATGATTTTATCGACTGTGATCGCTTTGAAGATGAAGATGATGATCGTCTCGGCTGTACCACCTTGAAGATGGAGATGATGATCCATGAAGATGATGATCTTTTCTACTGCGCCACATTAAACATGAAGATGATGATTGTCTGCGTCGCATTGAAGATGATGATCGCCTGA

mRNA sequence

ATGGAAGAAGATGATCCTATCGACTTTGACAGCACTGAAGATGAAGATGATGATTCTATCGACTTTGACTGCACTGAACATGAAGATGATGATCTTATCGGCTGCGACCTCTTTGAAGATGAAGATGATGATTTTATCGACTGTGATCGCTTTGAAGATGAAGATGATGATCGTCTCGGCTGTACCACCTTGAAGATGGAGATGATGATCCATGAAGATGATGATCTTTTCTACTGCGCCACATTAAACATGAAGATGATGATTGTCTGCGTCGCATTGAAGATGATGATCGCCTGA

Coding sequence (CDS)

ATGGAAGAAGATGATCCTATCGACTTTGACAGCACTGAAGATGAAGATGATGATTCTATCGACTTTGACTGCACTGAACATGAAGATGATGATCTTATCGGCTGCGACCTCTTTGAAGATGAAGATGATGATTTTATCGACTGTGATCGCTTTGAAGATGAAGATGATGATCGTCTCGGCTGTACCACCTTGAAGATGGAGATGATGATCCATGAAGATGATGATCTTTTCTACTGCGCCACATTAAACATGAAGATGATGATTGTCTGCGTCGCATTGAAGATGATGATCGCCTGA

Protein sequence

MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLGCTTLKMEMMIHEDDDLFYCATLNMKMMIVCVALKMMIA

Homology

[Close]

BLAST of IVF0018639 vs. ExPASy TrEMBL
Match: A0A5D3DTM9 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G001220 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 82/121 (67.77%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 1   MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 60
           MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG
Sbjct: 11  MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 70

Query: 61  --------CTTLKM---------------------EMMIHEDDDLFYCATLNMKMMIVCV 93
                   C  LKM                     +MMIHEDDD FY   L MKMMIV  
Sbjct: 71  YEDDDHLYCVALKMKMMATFKIKMIIVYVVPVLKIDMMIHEDDDRFYYTALKMKMMIVMA 130

[Close]

BLAST of IVF0018639 vs. ExPASy TrEMBL
Match: A0A5D3D493 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00860 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 72/111 (64.86%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 1   MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 60
           MEEDDPIDFD++ED   D I+FD TE EDDD I  D  EDEDDD I CD FEDEDDDRLG
Sbjct: 24  MEEDDPIDFDNSEDAKHDLINFDSTEDEDDDPIYFDYTEDEDDDLIGCDLFEDEDDDRLG 83

Query: 61  CTTLKMEMMIHEDDDLFYCATLNMKMMI--------------VCVALKMMI 98
           C TLKMEM IHEDDDLFYCA L MKMMI              +C  +KMMI
Sbjct: 84  CATLKMEMTIHEDDDLFYCAALKMKMMIHIGEDEDEDPLSCNICEKMKMMI 134

[Close]

BLAST of IVF0018639 vs. ExPASy TrEMBL
Match: A0A1S4E1H3 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC107991530 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDL-------------IGCDLFEDEDDDFID 60
           MEEDD IDF+  + EDDDSIDF+  +HEDDD              I C+  EDEDDD ID
Sbjct: 14  MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61  CDRFEDEDDDRLGCTTLKMEMMI---HEDDD 76
           CD  EDEDDDRLG   LK+EMMI   H +D+
Sbjct: 74  CDHIEDEDDDRLGYAALKIEMMIILRHIEDE 104

[Close]

BLAST of IVF0018639 vs. ExPASy TrEMBL
Match: A0A5D3BPS5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00260 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 48/83 (57.83%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDL-------------IGCDLFEDEDDDFID 60
          MEEDD IDF+  + EDDDSIDF+  +HEDDD              I C+  EDEDDD ID
Sbjct: 14 MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61 CDRFEDEDDDRLGCTTLKMEMMI 71
          CD  EDEDDDRLG   LK+EMMI
Sbjct: 74 CDHIEDEDDDRLGYAALKIEMMI 96

[Close]

BLAST of IVF0018639 vs. ExPASy TrEMBL
Match: A0A5A7T1P1 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00660 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-09
Identity = 56/127 (44.09%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 4   DDPIDFDSTEDE----------------DDDSIDFDCTEHEDDDLIGCDLFEDEDDDFID 63
           DDPIDF+  E+E                DDD IDF+  + E DD I CD  EDEDDD I 
Sbjct: 9   DDPIDFNRIENETTPTYRVQHLKEDDAIDDDPIDFNLVKDEADDSIDCDCIEDEDDDPIS 68

Query: 64  CDRFEDEDDDRLGCTTLKMEMMIHEDDDLFY-------------------------CATL 90
           C RF  EDDDRLGC TLKMEM++ EDD + +                         CATL
Sbjct: 69  CHRF--EDDDRLGCVTLKMEMLLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLGCATL 128

[Close]

BLAST of IVF0018639 vs. NCBI nr
Match: TYK26809.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (333), Expect = 1.75e-37
Identity = 82/121 (67.77%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 1   MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 60
           MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG
Sbjct: 11  MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 70

Query: 61  --------CTTLKM---------------------EMMIHEDDDLFYCATLNMKMMIVCV 92
                   C  LKM                     +MMIHEDDD FY   L MKMMIV  
Sbjct: 71  YEDDDHLYCVALKMKMMATFKIKMIIVYVVPVLKIDMMIHEDDDRFYYTALKMKMMIVMA 130

[Close]

BLAST of IVF0018639 vs. NCBI nr
Match: TYK18365.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 6.38e-30
Identity = 67/88 (76.14%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 60
           MEEDDPIDFD++ED   D I+FD TE EDDD I  D  EDEDDD I CD FEDEDDDRLG
Sbjct: 24  MEEDDPIDFDNSEDAKHDLINFDSTEDEDDDPIYFDYTEDEDDDLIGCDLFEDEDDDRLG 83

Query: 61  CTTLKMEMMIHEDDDLFYCATLNMKMMI 88
           C TLKMEM IHEDDDLFYCA L MKMMI
Sbjct: 84  CATLKMEMTIHEDDDLFYCAALKMKMMI 111

[Close]

BLAST of IVF0018639 vs. NCBI nr
Match: KAA0039603.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK01703.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 4.03e-13
Identity = 48/83 (57.83%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIG-------------CDLFEDEDDDFID 60
          MEEDD IDF+  + EDDDSIDF+  +HEDDD I              C+  EDEDDD ID
Sbjct: 14 MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61 CDRFEDEDDDRLGCTTLKMEMMI 70
          CD  EDEDDDRLG   LK+EMMI
Sbjct: 74 CDHIEDEDDDRLGYAALKIEMMI 96

[Close]

BLAST of IVF0018639 vs. NCBI nr
Match: XP_016902073.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.59e-12
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIG-------------CDLFEDEDDDFID 60
           MEEDD IDF+  + EDDDSIDF+  +HEDDD I              C+  EDEDDD ID
Sbjct: 14  MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61  CDRFEDEDDDRLGCTTLKMEMMI---HEDDD 75
           CD  EDEDDDRLG   LK+EMMI   H +D+
Sbjct: 74  CDHIEDEDDDRLGYAALKIEMMIILRHIEDE 104

[Close]

BLAST of IVF0018639 vs. NCBI nr
Match: KAA0037362.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYJ97544.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.83e-12
Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 16  DDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLGCTTLKMEMMIHEDDD 75
           DDD IDF+  + E DD I CD  EDEDDD I C RFED  DDRLGC TLKMEM++ EDD 
Sbjct: 37  DDDPIDFNLVKDEADDSIDCDCIEDEDDDPISCHRFED--DDRLGCVTLKMEMLLEEDDP 96

Query: 76  LFY-------------------------CATLNMKMMIV 89
           + +                         CATL +KMMIV
Sbjct: 97  IHFNCVKDEDDDPIGCDRFEDENDNCLGCATLKIKMMIV 133

The following BLAST results are available for this feature:

BLAST of IVF0018639 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018639 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTM9	1.9e-28	67.77	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var....	[more]
A0A5D3D493	1.2e-22	64.86	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var....	[more]
A0A1S4E1H3	2.0e-09	54.95	phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3...	[more]
A0A5D3BPS5	2.6e-09	57.83	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var....	[more]
A0A5A7T1P1	3.4e-09	44.09	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var....	[more]

BLAST of IVF0018639 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26809.1	1.75e-37	67.77	phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m...	[more]
TYK18365.1	6.38e-30	76.14	phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m...	[more]
KAA0039603.1	4.03e-13	57.83	phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m...	[more]
XP_016902073.1	1.59e-12	54.95	PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ...	[more]
KAA0037362.1	3.83e-12	48.48	phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m...	[more]

BLAST of IVF0018639 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018639.1	IVF0018639.1	mRNA