IVF0018622 (gene) Melon (IVF77) v1

Overview


Name	IVF0018622
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr09: 15524720 .. 15525175 (-)
RNA-Seq Expression	IVF0018622
Synteny	IVF0018622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCCACTCCTCCAAATTTCTCTGTTCTCGACACACCTGCAACAAGTTTCACAAATCCACCGCTGAATCAAATATTAAACCAACTTACAACCATAAAGCTAGATAGGAGCAACTACCTATTGTGGAAGACGCTAGCTCTACCCATTCTAAAAGGATACAAGTTGGAAGGACATTTAACAGGTGAGAAACCTTGCCCTGAAAAATTCGTTACTATCACATCCTCTGCTGGTTCTAATGGCTCGGTCACGGAAGAAGGAGATGATCGTGAACAAAGAGCTCCTAAACAAATAGCTTCTTCAAGCATGTCAGCACCTGCTATTATCAATCCCTTGTTCGAACAGTGGATAATGACTGATTTACTACTGCTTGGTTGGTTGTACAACTCAATGACACCTAAAGTAGCCGTTCAACTGATGGGCTTCACAATGCCAAAGATCTGTCGTAAGTAA

mRNA sequence

ATGGCCAATGCCACTCCTCCAAATTTCTCTGTTCTCGACACACCTGCAACAAGTTTCACAAATCCACCGCTGAATCAAATATTAAACCAACTTACAACCATAAAGCTAGATAGGAGCAACTACCTATTGTGGAAGACGCTAGCTCTACCCATTCTAAAAGGATACAAGTTGGAAGGACATTTAACAGGTGAGAAACCTTGCCCTGAAAAATTCGTTACTATCACATCCTCTGCTGGTTCTAATGGCTCGGTCACGGAAGAAGGAGATGATCGTGAACAAAGAGCTCCTAAACAAATAGCTTCTTCAAGCATGTCAGCACCTGCTATTATCAATCCCTTGTTCGAACAGTGGATAATGACTGATTTACTACTGCTTGGTTGGTTGTACAACTCAATGACACCTAAAGTAGCCGTTCAACTGATGGGCTTCACAATGCCAAAGATCTGTCGTAAGTAA

Coding sequence (CDS)

ATGGCCAATGCCACTCCTCCAAATTTCTCTGTTCTCGACACACCTGCAACAAGTTTCACAAATCCACCGCTGAATCAAATATTAAACCAACTTACAACCATAAAGCTAGATAGGAGCAACTACCTATTGTGGAAGACGCTAGCTCTACCCATTCTAAAAGGATACAAGTTGGAAGGACATTTAACAGGTGAGAAACCTTGCCCTGAAAAATTCGTTACTATCACATCCTCTGCTGGTTCTAATGGCTCGGTCACGGAAGAAGGAGATGATCGTGAACAAAGAGCTCCTAAACAAATAGCTTCTTCAAGCATGTCAGCACCTGCTATTATCAATCCCTTGTTCGAACAGTGGATAATGACTGATTTACTACTGCTTGGTTGGTTGTACAACTCAATGACACCTAAAGTAGCCGTTCAACTGATGGGCTTCACAATGCCAAAGATCTGTCGTAAGTAA

Protein sequence

MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMTDLLLLGWLYNSMTPKVAVQLMGFTMPKICRK

Homology

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BLAST of IVF0018622 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.5e-75
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH 60
           MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH
Sbjct: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH 60

Query: 61  LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMT 120
           LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMT
Sbjct: 61  LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMT 120

Query: 121 DLLLLGWLYNSMTPKVAVQLMGFTMPK 148
           DLLLLGWLYNSMTPKVAVQLMGFT  K
Sbjct: 121 DLLLLGWLYNSMTPKVAVQLMGFTNAK 147

[Close]

BLAST of IVF0018622 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 94/141 (66.67%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 4   ATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 63
           A PP+ S     +  F+NPPLNQILNQL T+KLDR NYLLWKTLALPILKGYKLEGHLTG
Sbjct: 8   AAPPSLS-----SAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTG 67

Query: 64  EKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMTDLL 123
           E PCP  FV   S++ SN +VTEEG D        I +SS   P I+N LFEQW+ TDLL
Sbjct: 68  ETPCPSHFV--LSASSSNTTVTEEGAD------ATIGASSSITPRIVNSLFEQWVTTDLL 127

Query: 124 LLGWLYNSMTPKVAVQLMGFT 145
           LLGWLYNSMTP VA+QLMGFT
Sbjct: 128 LLGWLYNSMTPDVAIQLMGFT 135

[Close]

BLAST of IVF0018622 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 94/141 (66.67%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 4   ATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 63
           A PP+ S     +  F+NPPLNQILNQL T+KLDR NYLLWKTLALPILKGYKLEGHLTG
Sbjct: 8   AAPPSLS-----SAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTG 67

Query: 64  EKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMTDLL 123
           E PCP  FV   S++ SN +VTEEG D        I +SS   P I+N LFEQW+ TDLL
Sbjct: 68  ETPCPSHFV--LSASSSNTTVTEEGAD------ATIGASSSITPRIVNSLFEQWVTTDLL 127

Query: 124 LLGWLYNSMTPKVAVQLMGFT 145
           LLGWLYNSMTP VA+QLMGFT
Sbjct: 128 LLGWLYNSMTPDVAIQLMGFT 135

[Close]

BLAST of IVF0018622 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 94/141 (66.67%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 4   ATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 63
           A PP+ S     +  F+NPPLNQILNQLTT+KLDR NYLLWKTLALPILK YKLEGHLT 
Sbjct: 8   AAPPSLS-----SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 67

Query: 64  EKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMTDLL 123
           E PCP  FV   S++ SN +VTEEG D        I +SS   P I+NPLFEQW+ TDLL
Sbjct: 68  ETPCPSHFV--LSASSSNTTVTEEGAD------ATIGASSSITPRIVNPLFEQWVTTDLL 127

Query: 124 LLGWLYNSMTPKVAVQLMGFT 145
           LLGWLYNSMTP VA+QLMGFT
Sbjct: 128 LLGWLYNSMTPDVAIQLMGFT 135

[Close]

BLAST of IVF0018622 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 94/141 (66.67%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 4   ATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 63
           A PP+ S     +  F+NPPLNQILNQLTT+KLDR NYLLWKTLALPILK YKLEGHLT 
Sbjct: 8   AAPPSLS-----SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 67

Query: 64  EKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMTDLL 123
           E PCP  FV   S++ SN +VTEEG D        I +SS   P I+NPLFEQW+ TDLL
Sbjct: 68  ETPCPSHFV--LSASSSNTTVTEEGAD------ATIGASSSITPRIVNPLFEQWVTTDLL 127

Query: 124 LLGWLYNSMTPKVAVQLMGFT 145
           LLGWLYNSMTP VA+QLMGFT
Sbjct: 128 LLGWLYNSMTPDVAIQLMGFT 135

[Close]

BLAST of IVF0018622 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 289 bits (739), Expect = 3.56e-98
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH 60
           MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH
Sbjct: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH 60

Query: 61  LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMT 120
           LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMT
Sbjct: 61  LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMT 120

Query: 121 DLLLLGWLYNSMTPKVAVQLMGFTMPK 147
           DLLLLGWLYNSMTPKVAVQLMGFT  K
Sbjct: 121 DLLLLGWLYNSMTPKVAVQLMGFTNAK 147

[Close]

BLAST of IVF0018622 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (454), Expect = 1.35e-52
Identity = 98/148 (66.22%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 1   MANA----TPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYK 60
           MANA     PP+ S     +  F+NPPLNQILNQL T+KLDR NYLLWKTLALPILKGYK
Sbjct: 1   MANAQPTAAPPSLS-----SAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYK 60

Query: 61  LEGHLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQ 120
           LEGHLTGE PCP  FV   SS  SN +VTEEG D        I +SS   P I+N LFEQ
Sbjct: 61  LEGHLTGETPCPSHFVLSASS--SNTTVTEEGADAT------IGASSSITPRIVNSLFEQ 120

Query: 121 WIMTDLLLLGWLYNSMTPKVAVQLMGFT 144
           W+ TDLLLLGWLYNSMTP VA+QLMGFT
Sbjct: 121 WVTTDLLLLGWLYNSMTPDVAIQLMGFT 135

[Close]

BLAST of IVF0018622 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 179 bits (454), Expect = 1.54e-52
Identity = 98/148 (66.22%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 1   MANA----TPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYK 60
           MANA     PP+ S     +  F+NPPLNQILNQLTT+KLDR NYLLWKTLALPILK YK
Sbjct: 1   MANAQPTAAPPSLS-----SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYK 60

Query: 61  LEGHLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQ 120
           LEGHLT E PCP  FV   SS  SN +VTEEG D        I +SS   P I+NPLFEQ
Sbjct: 61  LEGHLTAETPCPSHFVLSASS--SNTTVTEEGADAT------IGASSSITPRIVNPLFEQ 120

Query: 121 WIMTDLLLLGWLYNSMTPKVAVQLMGFT 144
           W+ TDLLLLGWLYNSMTP VA+QLMGFT
Sbjct: 121 WVTTDLLLLGWLYNSMTPDVAIQLMGFT 135

[Close]

BLAST of IVF0018622 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 179 bits (454), Expect = 4.53e-52
Identity = 98/148 (66.22%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 1   MANA----TPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYK 60
           MANA     PP+ S     +  F+NPPLNQILNQLTT+KLDR NYLLWKTLALPILK YK
Sbjct: 1   MANAQPTAAPPSLS-----SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYK 60

Query: 61  LEGHLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQ 120
           LEGHLT E PCP  FV   SS  SN +VTEEG D        I +SS   P I+NPLFEQ
Sbjct: 61  LEGHLTAETPCPSHFVLSASS--SNTTVTEEGADAT------IGASSSITPRIVNPLFEQ 120

Query: 121 WIMTDLLLLGWLYNSMTPKVAVQLMGFT 144
           W+ TDLLLLGWLYNSMTP VA+QLMGFT
Sbjct: 121 WVTTDLLLLGWLYNSMTPDVAIQLMGFT 135

[Close]

BLAST of IVF0018622 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 179 bits (454), Expect = 7.74e-52
Identity = 98/148 (66.22%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 1   MANA----TPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYK 60
           MANA     PP+ S     +  F+NPPLNQILNQLTT+KLDR NYLLWKTLALPILK YK
Sbjct: 1   MANAQPTAAPPSLS-----SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYK 60

Query: 61  LEGHLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQ 120
           LEGHLT E PCP  FV   SS  SN +VTEEG D        I +SS   P I+NPLFEQ
Sbjct: 61  LEGHLTAETPCPSHFVLSASS--SNTTVTEEGADAT------IGASSSITPRIVNPLFEQ 120

Query: 121 WIMTDLLLLGWLYNSMTPKVAVQLMGFT 144
           W+ TDLLLLGWLYNSMTP VA+QLMGFT
Sbjct: 121 WVTTDLLLLGWLYNSMTPDVAIQLMGFT 135

The following BLAST results are available for this feature:

BLAST of IVF0018622 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCS1	9.5e-75	98.64	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]
A0A5A7SIT7	1.8e-41	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCH9	1.8e-41	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E1U9	1.8e-41	66.67	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1U6	1.8e-41	66.67	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of IVF0018622 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066132.1	3.56e-98	98.64	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
TYJ96311.1	1.35e-52	66.22	uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]	[more]
XP_016902205.1	1.54e-52	66.22	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]
XP_016902204.1	4.53e-52	66.22	PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo]	[more]
XP_016902203.1	7.74e-52	66.22	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]

BLAST of IVF0018622 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018622.2	IVF0018622.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity