IVF0018617 (gene) Melon (IVF77) v1

Overview


Name	IVF0018617
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transcription factor bHLH36-like
Location	chr07: 20308204 .. 20308506 (-)
RNA-Seq Expression	IVF0018617
Synteny	IVF0018617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGAGAGAGACAAAGAAGACAAGAAATCAGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACATGGAAAGAGATAAATGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCACAAGTGATGCTATGTCTCCTCGCCGTAGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGAGTTAAGGTTGGGGTTTTCGTCATGCATCGTTCGTCGTTCGTGA

mRNA sequence

ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGAGAGAGACAAAGAAGACAAGAAATCAGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACATGGAAAGAGATAAATGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCACAAGTGATGCTATGTCTCCTCGCCGTAGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGAGTTAAGGTTGGGGTTTTCGTCATGCATCGTTCGTCGTTCGTGA

Coding sequence (CDS)

ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGAGAGAGACAAAGAAGACAAGAAATCAGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACATGGAAAGAGATAAATGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCACAAGTGATGCTATGTCTCCTCGCCGTAGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGAGTTAAGGTTGGGGTTTTCGTCATGCATCGTTCGTCGTTCGTGA

Protein sequence

MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQELTSDAMSPRRRSLSPRRKDVEMRRMELRLGFSSCIVRRS

Homology

[Close]

BLAST of IVF0018617 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.7e-27
Identity = 75/105 (71.43%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQ 60
           MDK VVELGRERERQRRQEISALYM LR LLPLEFIKVICGTVH  RDK REKKRK KDQ
Sbjct: 1   MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61  ELTSDAMS------PRRRSLSPRRKDVEMRRMELRLGFSSCIVRR 100
           ELT D +        R  S   RRKD+EMRR+ LRLGFS C++ R
Sbjct: 61  ELTGDDIGLFVVGLHRYGSPLSRRKDIEMRRIGLRLGFSLCVICR 105

[Close]

BLAST of IVF0018617 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.6e-23
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQ 60
          MDKG+VELGRERERQRRQEI ALYMSLRTLLPLEFIKVI GT+H  RDKWREKKRK KDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 ELTSDAM 68
          ELT DAM
Sbjct: 61 ELTGDAM 67

[Close]

BLAST of IVF0018617 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQ 60
          MDKGVV+L RERERQRRQEI ALYM++RTLL LEFIKVICG VH ERDKWREKKRK KDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

Query: 61 ELTSDAM 68
          EL  D M
Sbjct: 61 ELIGDDM 67

[Close]

BLAST of IVF0018617 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 39
          MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

[Close]

BLAST of IVF0018617 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 2.79e-36
Identity = 74/103 (71.84%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQ 60
           MDK VVELGRERERQRRQEISALYM LR LLPLEFIKVICGTVH  RDK REKKRK KDQ
Sbjct: 1   MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61  ELTSDAMS------PRRRSLSPRRKDVEMRRMELRLGFSSCIV 97
           ELT D +        R  S   RRKD+EMRR+ LRLGFS C++
Sbjct: 61  ELTGDDIGLFVVGLHRYGSPLSRRKDIEMRRIGLRLGFSLCVI 103

[Close]

BLAST of IVF0018617 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 2.15e-31
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQ 60
          MDKG+VELGRERERQRRQEI ALYMSLRTLLPLEFIKVI GT+H  RDKWREKKRK KDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 ELTSDAM 67
          ELT DAM
Sbjct: 61 ELTGDAM 67

[Close]

BLAST of IVF0018617 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 6.63e-25
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQ 60
          MDKGVV+L RERERQRRQEI ALYM++RTLL LEFIKVICG VH ERDKWREKKRK KDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

Query: 61 ELTSDAM 67
          EL  D M
Sbjct: 61 ELIGDDM 67

[Close]

BLAST of IVF0018617 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 9.99e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 38
          MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

[Close]

BLAST of IVF0018617 vs. NCBI nr
Match: XP_022967981.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 1.77e-05
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 10  RERERQRRQEISALYMSLRTLLPLEFIK 37
           RERERQRRQE+ ALYMSLRTLLPLEFIK
Sbjct: 79  RERERQRRQEMGALYMSLRTLLPLEFIK 106

[Close]

BLAST of IVF0018617 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 10 RERERQRRQEISALYMSLRTLLPLEFIK 38
          RE ERQRRQE+++LY SLR+LLPL FIK
Sbjct: 7  RETERQRRQEMASLYASLRSLLPLHFIK 34

The following BLAST results are available for this feature:

BLAST of IVF0018617 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STJ5	3.7e-27	71.43	Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3E3K5	5.6e-23	88.06	Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VJK9	1.5e-20	82.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TTV0	4.1e-10	100.00	Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of IVF0018617 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033316.1	2.79e-36	71.84	transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri...	[more]
TYK30150.1	2.15e-31	88.06	transcription factor bHLH36 [Cucumis melo var. makuwa]	[more]
KAA0065871.1	6.63e-25	82.09	retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p...	[more]
KAA0044825.1	9.99e-15	100.00	transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri...	[more]
XP_022967981.1	1.77e-05	92.86	transcription factor bHLH118-like [Cucurbita maxima]	[more]

BLAST of IVF0018617 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51780.1	1.5e-04	75.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 11..57 e-value: 3.9E-5 score: 23.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018617.2	IVF0018617.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity