IVF0018529 (gene) Melon (IVF77) v1

Overview


Name	IVF0018529
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein Ycf2-like
Location	chr08: 26355934 .. 26356236 (+)
RNA-Seq Expression	IVF0018529
Synteny	IVF0018529

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTGAAAAGCACCTTGAGAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCCAACAGTGCTTGGAAAAAGGGATGACGATGAAGACAAAGACGAAAAATGGCTTACGGATGAAAGTCGAGCAGAAAGTTCGAGAGGGCAAGATGATGGTCAATCTAAAGTGGCAAAATCAGAGACACCACCAACAGCCGGAGATAAAGATTCTTCGCCGTATAAGGCAAAGAAAAAAATGAAACTGTTGAAGATGTGTATAATACATATTATAGACTAA

mRNA sequence

ATGGCGTTTGAAAAGCACCTTGAGAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCCAACAGTGCTTGGAAAAAGGGATGACGATGAAGACAAAGACGAAAAATGGCTTACGGATGAAAGTCGAGCAGAAAGTTCGAGAGGGCAAGATGATGGTCAATCTAAAGTGGCAAAATCAGAGACACCACCAACAGCCGGAGATAAAGATTCTTCGCCGTATAAGGCAAAGAAAAAAATGAAACTGTTGAAGATGTGTATAATACATATTATAGACTAA

Coding sequence (CDS)

ATGGCGTTTGAAAAGCACCTTGAGAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCCAACAGTGCTTGGAAAAAGGGATGACGATGAAGACAAAGACGAAAAATGGCTTACGGATGAAAGTCGAGCAGAAAGTTCGAGAGGGCAAGATGATGGTCAATCTAAAGTGGCAAAATCAGAGACACCACCAACAGCCGGAGATAAAGATTCTTCGCCGTATAAGGCAAAGAAAAAAATGAAACTGTTGAAGATGTGTATAATACATATTATAGACTAA

Protein sequence

MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDDGQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID

Homology

[Close]

BLAST of IVF0018529 vs. ExPASy TrEMBL
Match: A0A5D3E0W5 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00360 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 60
           MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD
Sbjct: 57  MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 116

Query: 61  GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 101
           GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID
Sbjct: 117 GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 156

[Close]

BLAST of IVF0018529 vs. ExPASy TrEMBL
Match: A0A5A7VGU0 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00520 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 60
           MAFEKHLEKVE DQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD
Sbjct: 57  MAFEKHLEKVEGDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 116

Query: 61  GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 101
           GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID
Sbjct: 117 GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 156

[Close]

BLAST of IVF0018529 vs. ExPASy TrEMBL
Match: A0A5D3DZ94 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00480 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 2   AFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDDG 61
           AF++HL+KVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKD K L DESR ESSRGQDDG
Sbjct: 366 AFKEHLDKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDGKGLMDESRPESSRGQDDG 425

Query: 62  QSKVAKSETPPTAGDKDSSPYKAK 86
           QSKVAKSETPPTAGDKDSS YK +
Sbjct: 426 QSKVAKSETPPTAGDKDSSLYKGQ 449

[Close]

BLAST of IVF0018529 vs. ExPASy TrEMBL
Match: A0A5A7TQC0 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00480 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 2   AFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDDG 61
           AF++HL+KVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKD K L DESR ESSRGQDDG
Sbjct: 212 AFKEHLDKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDGKGLMDESRPESSRGQDDG 271

Query: 62  QSKVAKSETPPTAGDKDSSPYKAK 86
           QSKVAKSETPPTAGDKDSS YK +
Sbjct: 272 QSKVAKSETPPTAGDKDSSLYKGQ 295

[Close]

BLAST of IVF0018529 vs. ExPASy TrEMBL
Match: A0A5A7UIQ5 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00800 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.4e-28
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 2   AFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDDG 61
           AFE+HL+KVEEDQEEDDVEDL LDSSNPTVLGKRDDDEDKD K L DESR ESS+GQD G
Sbjct: 208 AFEEHLDKVEEDQEEDDVEDLKLDSSNPTVLGKRDDDEDKDGKGLIDESRPESSKGQDGG 267

Query: 62  QSKVAKSETPPTAGDKDSSPYKAKKK 88
           QSK+AKSETPPTAGDKDSSPYKA ++
Sbjct: 268 QSKMAKSETPPTAGDKDSSPYKATEE 293

[Close]

BLAST of IVF0018529 vs. NCBI nr
Match: TYK29271.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (481), Expect = 1.14e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 60
           MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD
Sbjct: 57  MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 116

Query: 61  GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 100
           GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID
Sbjct: 117 GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 156

[Close]

BLAST of IVF0018529 vs. NCBI nr
Match: KAA0065546.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 1.33e-58
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MAFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 60
           MAFEKHLEKVE DQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD
Sbjct: 57  MAFEKHLEKVEGDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDD 116

Query: 61  GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 100
           GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID
Sbjct: 117 GQSKVAKSETPPTAGDKDSSPYKAKKKMKLLKMCIIHIID 156

[Close]

BLAST of IVF0018529 vs. NCBI nr
Match: KAA0037804.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK02879.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 1.81e-36
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 2   AFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDDG 61
           AFE+HL+K +EDQEEDDVEDLNLDSSNP VLGKRDDDEDKDEK L DESRAESSRGQD G
Sbjct: 58  AFEEHLDKADEDQEEDDVEDLNLDSSNPMVLGKRDDDEDKDEKGLMDESRAESSRGQDGG 117

Query: 62  QSKVAKSETPPTAGDKDSSPYKA 84
           +SKVAKSETPPTA DKDSS YKA
Sbjct: 118 ESKVAKSETPPTAEDKDSSLYKA 140

[Close]

BLAST of IVF0018529 vs. NCBI nr
Match: KAA0054156.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (340), Expect = 2.56e-36
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 2   AFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDDG 61
           AFE+HL+KVEEDQEEDDVEDL LDSSNPTVLGKRDDDEDKD K L DESR ESS+GQD G
Sbjct: 208 AFEEHLDKVEEDQEEDDVEDLKLDSSNPTVLGKRDDDEDKDGKGLIDESRPESSKGQDGG 267

Query: 62  QSKVAKSETPPTAGDKDSSPYKA 84
           QSK+AKSETPPTAGDKDSSPYKA
Sbjct: 268 QSKMAKSETPPTAGDKDSSPYKA 290

[Close]

BLAST of IVF0018529 vs. NCBI nr
Match: KAA0045552.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 9.58e-36
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 2   AFEKHLEKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDEKWLTDESRAESSRGQDDG 61
           AF++HL+KVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKD K L DESR ESSRGQDDG
Sbjct: 212 AFKEHLDKVEEDQEEDDVEDLNLDSSNPTVLGKRDDDEDKDGKGLMDESRPESSRGQDDG 271

Query: 62  QSKVAKSETPPTAGDKDSSPYK 83
           QSKVAKSETPPTAGDKDSS YK
Sbjct: 272 QSKVAKSETPPTAGDKDSSLYK 293

The following BLAST results are available for this feature:

BLAST of IVF0018529 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018529 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0W5	6.8e-45	100.00	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G0...	[more]
A0A5A7VGU0	4.4e-44	99.00	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00...	[more]
A0A5D3DZ94	1.5e-28	88.10	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00...	[more]
A0A5A7TQC0	1.5e-28	88.10	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00...	[more]
A0A5A7UIQ5	3.4e-28	84.88	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00...	[more]

BLAST of IVF0018529 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29271.1	1.14e-59	100.00	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0065546.1	1.33e-58	99.00	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0037804.1	1.81e-36	86.75	protein Ycf2-like [Cucumis melo var. makuwa] >TYK02879.1 protein Ycf2-like [Cucu...	[more]
KAA0054156.1	2.56e-36	87.95	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0045552.1	9.58e-36	90.24	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018529 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018529.1	IVF0018529.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding