IVF0018525 (gene) Melon (IVF77) v1

Overview


Name	IVF0018525
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	VQ domain-containing protein
Location	chr03: 5157984 .. 5158786 (-)
RNA-Seq Expression	IVF0018525
Synteny	IVF0018525

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTTTTAAAAAAAAAAAAATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACGGTCTCCCCCAAGATCATCCACACCGATCCTACCCAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCGCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCCACCTCCAGATCCTATCTCCATACCCATTACAGATGCTATAGACGATCAAGCTGGTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCCCCGATTTCCCCCACTATTTTCAGTACTCCCCCACCACAGGCCGCCGCCGCCGCCACCGGGGATCTCACCTCTCTTACACAATTTTTCCATGACCTTAGCCCTATACCTGCCAATCATTTTTCTCCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTCCATTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTTAATTTTGTCAACCATTTCATTATCATTACAATTATTATTTTTTGGGAGCTGACATTATTAGATCAAAAGAAAAATTTACCCATATGTTGGATTCTTCAATCTACAACTTGGAAATGGATCCTTCTTTATTGCTTCATATGATCTTGATCATCTCTCCTTGGGCTGGCCTGTGTAAGTCCTTTTTTATTTTTTCTTCCTCCTTTTCATACTTTGGTGGGTAGC

mRNA sequence

CTTTTTTTTAAAAAAAAAAAAATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACGGTCTCCCCCAAGATCATCCACACCGATCCTACCCAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCGCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCCACCTCCAGATCCTATCTCCATACCCATTACAGATGCTATAGACGATCAAGCTGGTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCCCCGATTTCCCCCACTATTTTCAGTACTCCCCCACCACAGGCCGCCGCCGCCGCCACCGGGGATCTCACCTCTCTTACACAATTTTTCCATGACCTTAGCCCTATACCTGCCAATCATTTTTCTCCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTCCATTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTTAATTTTGTCAACCATTTCATTATCATTACAATTATTATTTTTTGGGAGCTGACATTATTAGATCAAAAGAAAAATTTACCCATATGTTGGATTCTTCAATCTACAACTTGGAAATGGATCCTTCTTTATTGCTTCATATGATCTTGATCATCTCTCCTTGGGCTGGCCTGTGTAAGTCCTTTTTTATTTTTTCTTCCTCCTTTTCATACTTTGGTGGGTAGC

Coding sequence (CDS)

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACGGTCTCCCCCAAGATCATCCACACCGATCCTACCCAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCGCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCCACCTCCAGATCCTATCTCCATACCCATTACAGATGCTATAGACGATCAAGCTGGTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCCCCGATTTCCCCCACTATTTTCAGTACTCCCCCACCACAGGCCGCCGCCGCCGCCACCGGGGATCTCACCTCTCTTACACAATTTTTCCATGACCTTAGCCCTATACCTGCCAATCATTTTTCTCCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTCCATTAA

Protein sequence

MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH

Homology

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BLAST of IVF0018525 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-14
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 0


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKP---PLPPPQ--------PHRPVIIYTVSPKIIH 62
           +K++LQ+ GPRPS L + KDSHKIKKP   P PPP         P  PV+IY VSPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TDPTQFKDLVQRLTGHHQ----------PPSSSSNHALVHDHPP---PDPI----SIPIT 122
              ++F ++VQRLTG               S ++  A   +  P    +P     ++ I 
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 DAIDDQA--GGVDRIIAHGILSPTPGLLPPISPTIFS 130
            A+++ A  GG     A GILSP+P LLP  S  IFS
Sbjct: 138 TAMEEAAEFGG----YAPGILSPSPALLPTASTGIFS 170

[Close]

BLAST of IVF0018525 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-10
Identity = 48/124 (38.71%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 11  GPRPSALKITKDSHK-IKKPPLPPPQPH------------------RPVIIYTVSPKIIH 70
           GP+P+ LK+  DSHK IKKPPL PP P                    PV IYTV+P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TDPTQFKDLVQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHG 116
           T P  F  LVQRLTG     ++SS+ +     P              D +  VD   +HG
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEP-------------KDTSTMVD--TSHG 121

[Close]

BLAST of IVF0018525 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 12  PRPSALKITKDSHKIKKPPLP-----PPQPHRPVIIYTVSPKIIHTDPTQFKDLVQRLTG 67
           P P  LK+ KDSH IKKPP P       +P  PVIIYT +P+IIHT+P  F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of IVF0018525 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-07
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 8  QLQGPRPSALKITKDSHKIKKPP--LPPPQPH---RPVIIYTVSPKIIHTDPTQFKDLVQ 67
          ++ G RPS+LK+  +SH IKK       P+PH    PVIIY  SPK+IHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of IVF0018525 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120
           VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120

Query: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177
           PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH
Sbjct: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of IVF0018525 vs. ExPASy TrEMBL
Match: A0A1S3B4N1 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 62
           +K++LQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ
Sbjct: 35  KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 94

Query: 63  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 122
           RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP
Sbjct: 95  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 154

Query: 123 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177
           ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH
Sbjct: 155 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

[Close]

BLAST of IVF0018525 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.5e-81
Identity = 162/178 (91.01%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHD-HPPPDPISIPIT-DAIDDQAGGVDRIIAHGILSPTPG 120
           VQRLTGHHQPPSSSSNHALVHD HPPPD ISIP T D IDDQA GVDRIIAHGILSPTPG
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQA-GVDRIIAHGILSPTPG 120

Query: 121 LLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177
           LLPPIS TIF+ PP   AAAA GDLTSLTQFFHDLSPI ANHFS SLDFFQQNFPDFH
Sbjct: 121 LLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of IVF0018525 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 110/176 (62.50%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60
           M E+KELQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPTQFKDL
Sbjct: 1   MAERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120
           VQRLTGH   PSS  +H     HPP        T  +     G +R + HGILSPTPGLL
Sbjct: 61  VQRLTGH--KPSSHDSH-----HPP------NTTMIMSTNHQGTER-VGHGILSPTPGLL 120

Query: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177
           PPI   IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFF QNFPD H
Sbjct: 121 PPIPANIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSLSLDFF-QNFPDLH 150

[Close]

BLAST of IVF0018525 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.4e-42
Identity = 108/176 (61.36%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60
           M E+KE+QLQGPRP+ALKITKDSHKI KP      PHRPVIIY+VSPK+IHTDPTQFKDL
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKP------PHRPVIIYSVSPKVIHTDPTQFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120
           VQRLTGH   PSS  +H     HPP        T  +     G +R + HGILSPTPGLL
Sbjct: 61  VQRLTGH--KPSSHDSH-----HPP------NTTMIMSTNPHGAER-VGHGILSPTPGLL 120

Query: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177
           PPI   IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFF QNFPD H
Sbjct: 121 PPIPANIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSLSLDFF-QNFPDLH 150

[Close]

BLAST of IVF0018525 vs. NCBI nr
Match: KAA0058915.1 (protein MKS1-like [Cucumis melo var. makuwa])

HSP 1 Score: 355 bits (912), Expect = 1.01e-123
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120
           VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120

Query: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176
           PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH
Sbjct: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of IVF0018525 vs. NCBI nr
Match: XP_008441652.2 (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 347 bits (890), Expect = 7.07e-120
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 62
           +K++LQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ
Sbjct: 35  KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 94

Query: 63  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 122
           RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP
Sbjct: 95  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 154

Query: 123 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176
           ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH
Sbjct: 155 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

[Close]

BLAST of IVF0018525 vs. NCBI nr
Match: XP_004148825.1 (protein MKS1 [Cucumis sativus])

HSP 1 Score: 309 bits (791), Expect = 2.95e-105
Identity = 162/178 (91.01%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDH-PPPDPISIPITD-AIDDQAGGVDRIIAHGILSPTPG 120
           VQRLTGHHQPPSSSSNHALVHDH PPPD ISIP TD  IDDQAG VDRIIAHGILSPTPG
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAG-VDRIIAHGILSPTPG 120

Query: 121 LLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176
           LLPPIS TIF+ PP   AAAA GDLTSLTQFFHDLSPI ANHFS SLDFFQQNFPDFH
Sbjct: 121 LLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of IVF0018525 vs. NCBI nr
Match: KGN47695.2 (hypothetical protein Csa_019084 [Cucumis sativus])

HSP 1 Score: 237 bits (605), Expect = 1.90e-77
Identity = 133/178 (74.72%), Postives = 134/178 (75.28%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDH-PPPDPISIPITD-AIDDQAGGVDRIIAHGILSPTPG 120
           VQRLTGHHQPPSSSSNHALVHDH PPPD ISIP TD  IDDQAG VDRIIAHGILSPTPG
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAG-VDRIIAHGILSPTPG 120

Query: 121 LLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176
                                               PI ANHFS SLDFFQQNFPDFH
Sbjct: 121 ------------------------------------PIAANHFSSSLDFFQQNFPDFH 141

[Close]

BLAST of IVF0018525 vs. NCBI nr
Match: XP_038885910.1 (protein MKS1-like [Benincasa hispida])

HSP 1 Score: 214 bits (546), Expect = 4.46e-68
Identity = 128/179 (71.51%), Postives = 140/179 (78.21%), Query Frame = 0


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQP--HRPVIIYTVSPKIIHTDPTQFK 60
           MPE+KE+ LQGPRP+ALKITKDSHKIKKPPLPPP P  HRPVIIYTVSPKIIHT+PT+FK
Sbjct: 1   MPERKEVHLQGPRPAALKITKDSHKIKKPPLPPPHPPPHRPVIIYTVSPKIIHTEPTEFK 60

Query: 61  DLVQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPG 120
           DLVQRLTG      SSSN AL  DHP    +S+  T++ID    GV+R+  HGILSPTPG
Sbjct: 61  DLVQRLTGLRP---SSSNDAL--DHPTSMSMSMN-TNSIDQ---GVERV-GHGILSPTPG 120

Query: 121 LLPPISPTIFSTPPPQAA-AAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176
           LLPPIS  IF TPPPQAA AAA  D +  TQFF D SPI  NHFS SLDFFQQNFPDFH
Sbjct: 121 LLPPISSNIF-TPPPQAAMAAAATDPSPFTQFFQDFSPIATNHFSSSLDFFQQNFPDFH 168

[Close]

BLAST of IVF0018525 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 0


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKP---PLPPPQ--------PHRPVIIYTVSPKIIH 62
           +K++LQ+ GPRPS L + KDSHKIKKP   P PPP         P  PV+IY VSPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TDPTQFKDLVQRLTGHHQ----------PPSSSSNHALVHDHPP---PDPI----SIPIT 122
              ++F ++VQRLTG               S ++  A   +  P    +P     ++ I 
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 DAIDDQA--GGVDRIIAHGILSPTPGLLPPISPTIFS 130
            A+++ A  GG     A GILSP+P LLP  S  IFS
Sbjct: 138 TAMEEAAEFGG----YAPGILSPSPALLPTASTGIFS 170

[Close]

BLAST of IVF0018525 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-13
Identity = 76/232 (32.76%), Postives = 94/232 (40.52%), Query Frame = 0


Query: 11  GPRPSALKITKDSHK-IKKPPLPPPQPH------------------RPVIIYTVSPKIIH 70
           GPRP  LK+  DSHK IKKPPL PP P                    PVIIYTVSP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 71  TDPTQFKDLVQRLTGHHQPPSSSSNHALVHDHP---------------PPDPISIPITDA 130
           T P  F  LVQRLTG     ++SS+++     P               P    ++     
Sbjct: 73  THPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSHGLISPAARFAVTEKAN 132

Query: 131 IDDQAG-----------------------------GVDRIIAH--GILSPTPGLLPPISP 173
           I ++ G                             G +R   H  GILSP P  LP +SP
Sbjct: 133 ISNELGTFVGGEGTMDQYYHYHHHHHHQEQQHQNQGFERPSFHHAGILSPGPNSLPSVSP 192

[Close]

BLAST of IVF0018525 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-11
Identity = 48/124 (38.71%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 11  GPRPSALKITKDSHK-IKKPPLPPPQPH------------------RPVIIYTVSPKIIH 70
           GP+P+ LK+  DSHK IKKPPL PP P                    PV IYTV+P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TDPTQFKDLVQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHG 116
           T P  F  LVQRLTG     ++SS+ +     P              D +  VD   +HG
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEP-------------KDTSTMVD--TSHG 121

[Close]

BLAST of IVF0018525 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.5e-11
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 12  PRPSALKITKDSHKIKKPPLP-----PPQPHRPVIIYTVSPKIIHTDPTQFKDLVQRLTG 67
           P P  LK+ KDSH IKKPP P       +P  PVIIYT +P+IIHT+P  F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of IVF0018525 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.2e-08
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 8  QLQGPRPSALKITKDSHKIKKPP--LPPPQPH---RPVIIYTVSPKIIHTDPTQFKDLVQ 67
          ++ G RPS+LK+  +SH IKK       P+PH    PVIIY  SPK+IHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

The following BLAST results are available for this feature:

BLAST of IVF0018525 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	4.7e-14	39.49	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	5.4e-10	38.71	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q9LS54	1.2e-09	56.67	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	7.3e-07	51.56	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of IVF0018525 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZA1	3.3e-95	100.00	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G008...	[more]
A0A1S3B4N1	1.2e-92	98.28	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1	[more]
A0A0A0KI80	3.5e-81	91.01	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=...	[more]
A0A6J1FKV1	1.9e-42	62.50	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1	[more]
A0A6J1JW33	9.4e-42	61.36	protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1	[more]

BLAST of IVF0018525 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058915.1	1.01e-123	100.00	protein MKS1-like [Cucumis melo var. makuwa]	[more]
XP_008441652.2	7.07e-120	98.28	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
XP_004148825.1	2.95e-105	91.01	protein MKS1 [Cucumis sativus]	[more]
KGN47695.2	1.90e-77	74.72	hypothetical protein Csa_019084 [Cucumis sativus]	[more]
XP_038885910.1	4.46e-68	71.51	protein MKS1-like [Benincasa hispida]	[more]

BLAST of IVF0018525 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	3.3e-15	39.49	MAP kinase substrate 1	[more]
AT1G21326.1	1.8e-13	32.76	VQ motif-containing protein	[more]
AT1G21320.1	3.8e-11	38.71	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	8.5e-11	56.67	VQ motif-containing protein	[more]
AT1G68450.1	5.2e-08	51.56	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 44..71 e-value: 5.9E-11 score: 41.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 106..169 coord: 4..77
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 106..169 coord: 4..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018525.1	IVF0018525.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0006810	transport
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane