IVF0018523 (gene) Melon (IVF77) v1

Overview
NameIVF0018523
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionHaloacid dehalogenase-like hydrolase domain-containing protein
Locationchr08: 4918415 .. 4918642 (+)
RNA-Seq ExpressionIVF0018523
SyntenyIVF0018523
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCACTTTCCTTCTGTTCCTGCTTTTCCCATCATATTTTATTCTCTTTTCGTGAGGAAGAGGACTGGCAATGGGGTTTGATTGGTGGTGGACCTGGTGGTATATCAACAACAGAGAGCTGTCCAACTGAATTAACAAATGATGAAGCCATGAATTCAATGGAAGAGAGCGGGAAACGAGATATGATACTCTGCTTTCTACTGGAAGATCCTTGGCCAGCGTAA

mRNA sequence

ATGGTTTCACTTTCCTTCTGTTCCTGCTTTTCCCATCATATTTTATTCTCTTTTCGTGAGGAAGAGGACTGGCAATGGGGTTTGATTGGTGGTGGACCTGGTGGTATATCAACAACAGAGAGCTGTCCAACTGAATTAACAAATGATGAAGCCATGAATTCAATGGAAGAGAGCGGGAAACGAGATATGATACTCTGCTTTCTACTGGAAGATCCTTGGCCAGCGTAA

Coding sequence (CDS)

ATGGTTTCACTTTCCTTCTGTTCCTGCTTTTCCCATCATATTTTATTCTCTTTTCGTGAGGAAGAGGACTGGCAATGGGGTTTGATTGGTGGTGGACCTGGTGGTATATCAACAACAGAGAGCTGTCCAACTGAATTAACAAATGATGAAGCCATGAATTCAATGGAAGAGAGCGGGAAACGAGATATGATACTCTGCTTTCTACTGGAAGATCCTTGGCCAGCGTAA

Protein sequence

MVSLSFCSCFSHHILFSFREEEDWQWGLIGGGPGGISTTESCPTELTNDEAMNSMEESGKRDMILCFLLEDPWPA
Homology
[Close]
BLAST of IVF0018523 vs. ExPASy TrEMBL
Match: A0A5D3CQJ9 (Haloacid dehalogenase-like hydrolase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002940 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.3e-26
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 9   CFSHHILFSFREEEDWQWGLIGGGPGGISTTESCPTELTNDEAMNSMEESGKRDMILCFL 68
           C   +   +  +EEDWQWGLIGGGPGGISTTESCPTELTNDEAMNSMEESGKRDMILCFL
Sbjct: 267 CVITYTTSTANQEEDWQWGLIGGGPGGISTTESCPTELTNDEAMNSMEESGKRDMILCFL 326

Query: 69  LEDPWPA 76
           LEDPWPA
Sbjct: 327 LEDPWPA 333

[Close]
BLAST of IVF0018523 vs. NCBI nr
Match: KAA0036312.1 (haloacid dehalogenase-like hydrolase domain-containing protein [Cucumis melo var. makuwa] >TYK12706.1 haloacid dehalogenase-like hydrolase domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 2.06e-33
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 19  REEEDWQWGLIGGGPGGISTTESCPTELTNDEAMNSMEESGKRDMILCFLLEDPWPA 75
            +EEDWQWGLIGGGPGGISTTESCPTELTNDEAMNSMEESGKRDMILCFLLEDPWPA
Sbjct: 277 NQEEDWQWGLIGGGPGGISTTESCPTELTNDEAMNSMEESGKRDMILCFLLEDPWPA 333

The following BLAST results are available for this feature:
BLAST of IVF0018523 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018523 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CQJ95.3e-2683.58Haloacid dehalogenase-like hydrolase domain-containing protein OS=Cucumis melo v... [more]
BLAST of IVF0018523 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036312.12.06e-3396.49haloacid dehalogenase-like hydrolase domain-containing protein [Cucumis melo var... [more]
BLAST of IVF0018523 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018523.1IVF0018523.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity