IVF0018466 (gene) Melon (IVF77) v1

Overview


Name	IVF0018466
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr11: 4749293 .. 4749583 (+)
RNA-Seq Expression	IVF0018466
Synteny	IVF0018466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCATTTGGAATGACATATTATGATTCAAGAGTCGGTCAATCGTCAGACTTTGGAACAAGATATTATACTTCAGAGGCAGGTCAATCACCATCAAACTTTGGGCAACAGTACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGTATGGTCATGGGCGTGGTCGCGGAGAGCATAATGAATATTTGTACTATGAAGTACCTGTAGCGATACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTTAA

mRNA sequence

ATGTCAGCATTTGGAATGACATATTATGATTCAAGAGTCGGTCAATCGTCAGACTTTGGAACAAGATATTATACTTCAGAGGCAGGTCAATCACCATCAAACTTTGGGCAACAGTACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGTATGGTCATGGGCGTGGTCGCGGAGAGCATAATGAATATTTGTACTATGAAGTACCTGTAGCGATACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTTAA

Coding sequence (CDS)

ATGTCAGCATTTGGAATGACATATTATGATTCAAGAGTCGGTCAATCGTCAGACTTTGGAACAAGATATTATACTTCAGAGGCAGGTCAATCACCATCAAACTTTGGGCAACAGTACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGTATGGTCATGGGCGTGGTCGCGGAGAGCATAATGAATATTTGTACTATGAAGTACCTGTAGCGATACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTTAA

Protein sequence

MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGEHNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS

Homology

[Close]

BLAST of IVF0018466 vs. ExPASy TrEMBL
Match: A0A5A7TVT0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005570 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.2e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
           MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE
Sbjct: 334 MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 393

Query: 61  HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS 97
           HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS
Sbjct: 394 HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS 429

[Close]

BLAST of IVF0018466 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.4e-33
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
           M  FG TYYDS VGQSSDFG  YY SEAGQS ++FGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 500 MPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 559

Query: 61  HNEYLYYEVPVAIPE---------------QLDEQQQQENQEEIQQQRVQS 97
           HNEYLYYEVP A+PE               Q DEQQQQENQEEIQQQRVQS
Sbjct: 560 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQS 610

[Close]

BLAST of IVF0018466 vs. ExPASy TrEMBL
Match: A0A5A7VBH9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00540 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.4e-33
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
          MSAFG TYYDS VGQSSDF TRYY SEAG S SNF QQYYDL SDPSSSYM+GH  GRGE
Sbjct: 3  MSAFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYMHGHEHGRGE 62

Query: 61 HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS 97
          H EYLYYEVP A+PEQ DEQQQQENQEEIQ+QRVQS
Sbjct: 63 HIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQS 98

[Close]

BLAST of IVF0018466 vs. ExPASy TrEMBL
Match: A0A5D3BSU2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00180 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.4e-33
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
           M  FG TYYDS VGQSSDFG  YY SEAGQS ++FGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 3   MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 62

Query: 61  HNEYLYYEVPVAIPE---------------QLDEQQQQENQEEIQQQRVQS 97
           HNEYLYYEVP A+PE               Q DEQQQQENQEEIQQQRVQS
Sbjct: 63  HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQS 113

[Close]

BLAST of IVF0018466 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.4e-33
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
           M  FG TYYDS VGQSSDFG  YY SEAGQS ++FGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 649 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 708

Query: 61  HNEYLYYEVPVAIPE---------------QLDEQQQQENQEEIQQQRVQS 97
           HNEYLYYEVP A+PE               Q DEQQQQENQEEIQQQRVQS
Sbjct: 709 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQS 759

[Close]

BLAST of IVF0018466 vs. NCBI nr
Match: KAA0045997.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (471), Expect = 6.73e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
           MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE
Sbjct: 334 MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 393

Query: 61  HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS 96
           HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS
Sbjct: 394 HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS 429

[Close]

BLAST of IVF0018466 vs. NCBI nr
Match: KAA0062959.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 3.74e-44
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
          MSAFG TYYDS VGQSSDF TRYY SEAG S SNF QQYYDL SDPSSSYM+GH  GRGE
Sbjct: 3  MSAFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYMHGHEHGRGE 62

Query: 61 HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS 96
          H EYLYYEVP A+PEQ DEQQQQENQEEIQ+QRVQS
Sbjct: 63 HIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQS 98

[Close]

BLAST of IVF0018466 vs. NCBI nr
Match: TYK02811.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 1.20e-43
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
           M  FG TYYDS VGQSSDFG  YY SEAGQS ++FGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 3   MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 62

Query: 61  HNEYLYYEVPVAIPEQL---------------DEQQQQENQEEIQQQRVQS 96
           HNEYLYYEVP A+PEQ                DEQQQQENQEEIQQQRVQS
Sbjct: 63  HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQS 113

[Close]

BLAST of IVF0018466 vs. NCBI nr
Match: TYK16383.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (363), Expect = 2.52e-42
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
          MS FG TYYDS VGQSSDF TRYY SEAG S SNF QQYYDL SDPSSSY++GH  G GE
Sbjct: 3  MSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGHGE 62

Query: 61 HNEYLYYEVPVAIPEQLDEQQQQENQEEIQQQRVQS 96
          H EYLYYEVP A+PEQ DEQQQQENQEEIQ+QRVQS
Sbjct: 63 HIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQS 98

[Close]

BLAST of IVF0018466 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 2.84e-41
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MSAFGMTYYDSRVGQSSDFGTRYYTSEAGQSPSNFGQQYYDLGSDPSSSYMYGHGRGRGE 60
           M  FG TYYDS VGQSSDFG  YY SEAGQS ++FGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 61  HNEYLYYEVPVAIPEQL---------------DEQQQQENQEEIQQQRVQS 96
           HNEYLYYEVP A+PEQ                DEQQQQENQEEIQQQRVQS
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQS 311

The following BLAST results are available for this feature:

BLAST of IVF0018466 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVT0	3.2e-44	100.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005570 P...	[more]
A0A5A7VIP6	4.4e-33	73.87	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7VBH9	4.4e-33	83.33	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BSU2	7.4e-33	73.87	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7SU33	7.4e-33	73.87	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of IVF0018466 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045997.1	6.73e-55	100.00	transposase [Cucumis melo var. makuwa]	[more]
KAA0062959.1	3.74e-44	83.33	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK02811.1	1.20e-43	73.87	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK16383.1	2.52e-42	80.21	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK18891.1	2.84e-41	73.87	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of IVF0018466 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018466.1	IVF0018466.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048507	meristem development
molecular_function	GO:0046983	protein dimerization activity