IVF0018433 (gene) Melon (IVF77) v1

Overview


Name	IVF0018433
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Location	chr10: 26546314 .. 26546553 (-)
RNA-Seq Expression	IVF0018433
Synteny	IVF0018433

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

mRNA sequence

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

Coding sequence (CDS)

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

Protein sequence

MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

Homology

[Close]

BLAST of IVF0018433 vs. ExPASy TrEMBL
Match: A0A5A7UAA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00800 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1    MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
            MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 1413 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1472

Query: 61   ATWEREDDMRSRYPELFEE 80
            ATWEREDDMRSRYPELFEE
Sbjct: 1473 ATWEREDDMRSRYPELFEE 1491

[Close]

BLAST of IVF0018433 vs. ExPASy TrEMBL
Match: A0A5A7TQM9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRSRYPELFEE 80
           ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of IVF0018433 vs. ExPASy TrEMBL
Match: A0A5A7V8Y0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9033G00010 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRSRYPELFEE 80
           ATWEREDDMRSRYPELFEE
Sbjct: 144 ATWEREDDMRSRYPELFEE 162

[Close]

BLAST of IVF0018433 vs. ExPASy TrEMBL
Match: A0A5A7TXC7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25154G00010 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRSRYPELFEE 80
           ATWEREDDMRSRYPELFEE
Sbjct: 144 ATWEREDDMRSRYPELFEE 162

[Close]

BLAST of IVF0018433 vs. ExPASy TrEMBL
Match: A0A5A7UDB9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6407G00010 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRSRYPELFEE 80
           ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of IVF0018433 vs. NCBI nr
Match: KAA0043673.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 1.16e-49
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
          MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEE 60

Query: 61 ATWEREDDMRSRYPELFEE 79
          ATWEREDDMRSRYPELFEE
Sbjct: 61 ATWEREDDMRSRYPELFEE 79

[Close]

BLAST of IVF0018433 vs. NCBI nr
Match: KAA0053953.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 1.88e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRSRYPELFEE 79
           ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of IVF0018433 vs. NCBI nr
Match: KAA0043675.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 1.88e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRSRYPELFEE 79
           ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of IVF0018433 vs. NCBI nr
Match: KAA0043507.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (408), Expect = 2.67e-49
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRIEE 110

Query: 61  ATWEREDDMRSRYPELFEE 79
           ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of IVF0018433 vs. NCBI nr
Match: KAA0063117.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (408), Expect = 2.67e-49
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRIEE 110

Query: 61  ATWEREDDMRSRYPELFEE 79
           ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

The following BLAST results are available for this feature:

BLAST of IVF0018433 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018433 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAA8	1.2e-36	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7TQM9	1.2e-36	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 ...	[more]
A0A5A7V8Y0	1.2e-36	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9033G00010 P...	[more]
A0A5A7TXC7	1.2e-36	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25154G00010 ...	[more]
A0A5A7UDB9	1.2e-36	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6407G00010 P...	[more]

BLAST of IVF0018433 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043673.1	1.16e-49	98.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053953.1	1.88e-49	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043675.1	1.88e-49	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043507.1	2.67e-49	98.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063117.1	2.67e-49	98.73	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018433 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..77
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 7..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018433.1	IVF0018433.1	mRNA