IVF0018397 (gene) Melon (IVF77) v1

Overview
NameIVF0018397
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptioncentromere protein V isoform X1
Locationchr03: 21070257 .. 21070451 (-)
RNA-Seq ExpressionIVF0018397
SyntenyIVF0018397
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATTAAGGGGTGCTGTTTGATTAAAGGTACCATCCCCAGTAGTCCAACCATTGCTTTCGTTCATCCATGGGCAATAGAGAAGTCTGACTCAAAGGACTGTGCCGGGGCCTTTGATCTTTCTCTTAGATCTCGTGCACCGCTACATGGCTTTCTTCCTCTTGATCGTAAACATGGTCGAGCCTATATCTAA

mRNA sequence

ATGTCTATTAAGGGGTGCTGTTTGATTAAAGGTACCATCCCCAGTAGTCCAACCATTGCTTTCGTTCATCCATGGGCAATAGAGAAGTCTGACTCAAAGGACTGTGCCGGGGCCTTTGATCTTTCTCTTAGATCTCGTGCACCGCTACATGGCTTTCTTCCTCTTGATCGTAAACATGGTCGAGCCTATATCTAA

Coding sequence (CDS)

ATGTCTATTAAGGGGTGCTGTTTGATTAAAGGTACCATCCCCAGTAGTCCAACCATTGCTTTCGTTCATCCATGGGCAATAGAGAAGTCTGACTCAAAGGACTGTGCCGGGGCCTTTGATCTTTCTCTTAGATCTCGTGCACCGCTACATGGCTTTCTTCCTCTTGATCGTAAACATGGTCGAGCCTATATCTAA

Protein sequence

MSIKGCCLIKGTIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI
Homology
[Close]
BLAST of IVF0018397 vs. ExPASy TrEMBL
Match: A0A5D3CJK9 (Centromere protein V isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00190 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 12  TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI 65
           TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI
Sbjct: 139 TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI 191

[Close]
BLAST of IVF0018397 vs. ExPASy TrEMBL
Match: A0A1S4E5L6 (centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 12  TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI 65
           TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI
Sbjct: 139 TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI 191

[Close]
BLAST of IVF0018397 vs. NCBI nr
Match: XP_016903270.1 (PREDICTED: centromere protein V isoform X1 [Cucumis melo] >KAA0045397.1 centromere protein V isoform X1 [Cucumis melo var. makuwa] >TYK11344.1 centromere protein V isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 2.15e-30
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 12  TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI 64
           TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI
Sbjct: 139 TIPSSPTIAFVHPWAIEKSDSKDCAGAFDLSLRSRAPLHGFLPLDRKHGRAYI 191

The following BLAST results are available for this feature:
BLAST of IVF0018397 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018397 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CJK94.7e-23100.00Centromere protein V isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S4E5L64.7e-23100.00centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=... [more]
BLAST of IVF0018397 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903270.12.15e-30100.00PREDICTED: centromere protein V isoform X1 [Cucumis melo] >KAA0045397.1 centrome... [more]
BLAST of IVF0018397 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018397.1IVF0018397.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016846 carbon-sulfur lyase activity
molecular_function GO:0046872 metal ion binding