IVF0018371 (gene) Melon (IVF77) v1

Overview


Name	IVF0018371
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transcription termination factor MTEF1
Location	tig00000060: 500659 .. 501432 (-)
RNA-Seq Expression	IVF0018371
Synteny	IVF0018371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACTTGTTTCGCAGAATCCTTCTACTTAGATCTCCATCGCCAGTCTTTTCTCAAGGATTTTCCGAAAGTCCGTTGAAATCTCTCAGATACTTATCGACTTCTTCGGAGATTGTATCATCTCCTACATCTGCTCCGTTGGCTTCTAATGCTGTTCAGCTTAAGAATAAACGGAAGGATGCAATTGCGTTACTTTCGAATCATGGATTCTCTGAATCACAAATCTCTGACCTTGACAAGAAGTATCCTCAAATTCTTTCTGCGAACCCCGAGAAAACCCTATTGCCCAAATTGTTGTTTCTTGAATCTAAAGGTCTTTCTTCCCCAGAGATTCCCAAATTAGTATGTTGAATTCCTTGTGTTTTAACATCAAGTTTAAACAAACGAATTATTCCTAATTTTGATTACCTTCAAGCCGTGTTTGGAAGTGAGGAGAAGACTCTCATTACCATAAAACGCTTTGCGGGTATTCTCGTCTGGGATCTTCGAATTTCAGTTGGTCCCAATATTGAAATTCTGAAACAAATTGGAGTGCCAGATTCAAATATTTTAAAATATCTTCAGCGGCAGCCTAGATCGTTCTTGATAAATTCCATCCGATTCAAGGAGACTGTAGAGAGAGTTACGGAAATGGGATTCAACCCTCAACAGATGCTGTTTGTTTTTGCTCTTTTTGGTCTGCGAGGAATGACCAAATCTACATGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTGTCTGAAGAAGAGATCCGTTTAGCTTTCTGA

mRNA sequence

ATGTCTAACTTGTTTCGCAGAATCCTTCTACTTAGATCTCCATCGCCAGTCTTTTCTCAAGGATTTTCCGAAAGTCCGTTGAAATCTCTCAGATACTTATCGACTTCTTCGGAGATTGTATCATCTCCTACATCTGCTCCGTTGGCTTCTAATGCTGTTCAGCTTAAGAATAAACGGAAGGATGCAATTGCGTTACTTTCGAATCATGGATTCTCTGAATCACAAATCTCTGACCTTGACAAGAAGTATCCTCAAATTCTTTCTGCGAACCCCGAGAAAACCCTATTGCCCAAATTGTTGTTTCTTGAATCTAAAGCCGTGTTTGGAAGTGAGGAGAAGACTCTCATTACCATAAAACGCTTTGCGGGTATTCTCGTCTGGGATCTTCGAATTTCAGTTGGTCCCAATATTGAAATTCTGAAACAAATTGGAGTGCCAGATTCAAATATTTTAAAATATCTTCAGCGGCAGCCTAGATCGTTCTTGATAAATTCCATCCGATTCAAGGAGACTGTAGAGAGAGTTACGGAAATGGGATTCAACCCTCAACAGATGCTGTTTGTTTTTGCTCTTTTTGGTCTGCGAGGAATGACCAAATCTACATGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTGTCTGAAGAAGAGATCCGTTTAGCTTTCTGA

Coding sequence (CDS)

ATGTCTAACTTGTTTCGCAGAATCCTTCTACTTAGATCTCCATCGCCAGTCTTTTCTCAAGGATTTTCCGAAAGTCCGTTGAAATCTCTCAGATACTTATCGACTTCTTCGGAGATTGTATCATCTCCTACATCTGCTCCGTTGGCTTCTAATGCTGTTCAGCTTAAGAATAAACGGAAGGATGCAATTGCGTTACTTTCGAATCATGGATTCTCTGAATCACAAATCTCTGACCTTGACAAGAAGTATCCTCAAATTCTTTCTGCGAACCCCGAGAAAACCCTATTGCCCAAATTGTTGTTTCTTGAATCTAAAGCCGTGTTTGGAAGTGAGGAGAAGACTCTCATTACCATAAAACGCTTTGCGGGTATTCTCGTCTGGGATCTTCGAATTTCAGTTGGTCCCAATATTGAAATTCTGAAACAAATTGGAGTGCCAGATTCAAATATTTTAAAATATCTTCAGCGGCAGCCTAGATCGTTCTTGATAAATTCCATCCGATTCAAGGAGACTGTAGAGAGAGTTACGGAAATGGGATTCAACCCTCAACAGATGCTGTTTGTTTTTGCTCTTTTTGGTCTGCGAGGAATGACCAAATCTACATGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTGTCTGAAGAAGAGATCCGTTTAGCTTTCTGA

Protein sequence

MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRKDAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF

Homology

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BLAST of IVF0018371 vs. ExPASy TrEMBL
Match: A0A5A7U135 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00900 PE=3 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.7e-117
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK
Sbjct: 289 MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 348

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSEEKTLITIKR 120
           DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSEEKTLITIKR
Sbjct: 349 DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSEEKTLITIKR 408

Query: 121 FAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGF 180
           FAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGF
Sbjct: 409 FAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGF 468

Query: 181 NPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF 224
           NPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF
Sbjct: 469 NPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF 511

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BLAST of IVF0018371 vs. ExPASy TrEMBL
Match: A0A5D3CWB6 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00910 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.5e-92
Identity = 191/257 (74.32%), Postives = 197/257 (76.65%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MS LFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK
Sbjct: 1   MSYLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESK--------------- 120
           D  +   NHGFSESQISDLDK+YPQILSANPEKTLLPKLLF +SK               
Sbjct: 61  DVFSFFENHGFSESQISDLDKRYPQILSANPEKTLLPKLLFFQSKGLSSPEVTKLVCSFP 120

Query: 121 -------------------AVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVP 180
                              AV GSEEKTL  IKRFA IL  DLR+SVGPNIE LKQ GVP
Sbjct: 121 RVFIGSLNKRIIPNFNYIQAVLGSEEKTLAAIKRFARILAGDLRLSVGPNIESLKQFGVP 180

Query: 181 DSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKV 224
           DSNILKYLQ QPR FL NSIRFKETVER TEMGFNPQQM FV A   L+ +TKSTWDKKV
Sbjct: 181 DSNILKYLQYQPRRFLTNSIRFKETVERATEMGFNPQQMQFVVAAKVLQEITKSTWDKKV 240

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BLAST of IVF0018371 vs. ExPASy TrEMBL
Match: A0A1S4DSL9 (uncharacterized protein LOC107990389 OS=Cucumis melo OX=3656 GN=LOC107990389 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.5e-92
Identity = 191/257 (74.32%), Postives = 197/257 (76.65%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MS LFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK
Sbjct: 1   MSYLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESK--------------- 120
           D  +   NHGFSESQISDLDK+YPQILSANPEKTLLPKLLF +SK               
Sbjct: 61  DVFSFFENHGFSESQISDLDKRYPQILSANPEKTLLPKLLFFQSKGLSSPEVTKLVCSFP 120

Query: 121 -------------------AVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVP 180
                              AV GSEEKTL  IKRFA IL  DLR+SVGPNIE LKQ GVP
Sbjct: 121 RVFIGSLNKRIIPNFNYIQAVLGSEEKTLAAIKRFARILAGDLRLSVGPNIESLKQFGVP 180

Query: 181 DSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKV 224
           DSNILKYLQ QPR FL NSIRFKETVER TEMGFNPQQM FV A   L+ +TKSTWDKKV
Sbjct: 181 DSNILKYLQYQPRRFLTNSIRFKETVERATEMGFNPQQMQFVVAAKVLQEITKSTWDKKV 240

[Close]

BLAST of IVF0018371 vs. ExPASy TrEMBL
Match: A0A5A7U7J7 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00730 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.4e-90
Identity = 188/257 (73.15%), Postives = 198/257 (77.04%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MSN+FRRILLLRSPSPVF QGFS+SPLKSLRYLSTSSEIVSSP SAPLASNAVQLKNKRK
Sbjct: 1   MSNVFRRILLLRSPSPVFPQGFSQSPLKSLRYLSTSSEIVSSPESAPLASNAVQLKNKRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESK--------------- 120
             IALL++HGFSESQIS LDK+YPQILSANPEK LLPKLLF +SK               
Sbjct: 61  AVIALLADHGFSESQISSLDKRYPQILSANPEKILLPKLLFFQSKGLSSPEIAKLVCSFP 120

Query: 121 -------------------AVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVP 180
                              AV GSEEKTL  IK F  IL  DLRISVGPNIEILKQIGVP
Sbjct: 121 RVLAGSLDNRIIPAFDYIQAVLGSEEKTLAFIKYFGSILTHDLRISVGPNIEILKQIGVP 180

Query: 181 DSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKV 224
           DSNILKY Q QPR F  NSIRFKETVERVTEMGFNPQ++ F+ A+F LR MTKSTWDKKV
Sbjct: 181 DSNILKYFQYQPRVFSRNSIRFKETVERVTEMGFNPQRLQFLVAVFALRAMTKSTWDKKV 240

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BLAST of IVF0018371 vs. ExPASy TrEMBL
Match: A0A5A7U0W3 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00790 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.4e-90
Identity = 185/257 (71.98%), Postives = 199/257 (77.43%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MSNLFR ILLL+SPSPVFSQGFS SPLKS+R+LSTSSEIVSS  SAPLASNA QLKNKRK
Sbjct: 1   MSNLFRVILLLKSPSPVFSQGFSGSPLKSIRFLSTSSEIVSSTESAPLASNAAQLKNKRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESK--------------- 120
             IALL+++G SESQIS LDK+YPQILSANPEKTLLPKLLF  SK               
Sbjct: 61  AVIALLADYGLSESQISVLDKRYPQILSANPEKTLLPKLLFFRSKGLSSPEIAKMVCSFP 120

Query: 121 -------------------AVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVP 180
                              A+ GSEEKTL+ IKRFAGIL WDLRIS GP+IEILKQ GVP
Sbjct: 121 RVFIGSLDKRIIPNFKYIQAMLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVP 180

Query: 181 DSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKV 224
           DSNILKYLQ QPR FL N IRFKE+VERVTEMGFNPQQM F+ A+F LR MTKSTWDKKV
Sbjct: 181 DSNILKYLQFQPRLFLTNPIRFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKV 240

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BLAST of IVF0018371 vs. NCBI nr
Match: KAA0049482.1 (transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16162.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 431 bits (1109), Expect = 7.30e-148
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK
Sbjct: 289 MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 348

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSEEKTLITIKR 120
           DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSEEKTLITIKR
Sbjct: 349 DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSEEKTLITIKR 408

Query: 121 FAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGF 180
           FAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGF
Sbjct: 409 FAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGF 468

Query: 181 NPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF 223
           NPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF
Sbjct: 469 NPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF 511

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BLAST of IVF0018371 vs. NCBI nr
Match: XP_016898958.1 (PREDICTED: uncharacterized protein LOC107990389 [Cucumis melo] >KAA0049483.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16163.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (892), Expect = 5.13e-117
Identity = 191/257 (74.32%), Postives = 197/257 (76.65%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MS LFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK
Sbjct: 1   MSYLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESK--------------- 120
           D  +   NHGFSESQISDLDK+YPQILSANPEKTLLPKLLF +SK               
Sbjct: 61  DVFSFFENHGFSESQISDLDKRYPQILSANPEKTLLPKLLFFQSKGLSSPEVTKLVCSFP 120

Query: 121 -------------------AVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVP 180
                              AV GSEEKTL  IKRFA IL  DLR+SVGPNIE LKQ GVP
Sbjct: 121 RVFIGSLNKRIIPNFNYIQAVLGSEEKTLAAIKRFARILAGDLRLSVGPNIESLKQFGVP 180

Query: 181 DSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKV 223
           DSNILKYLQ QPR FL NSIRFKETVER TEMGFNPQQM FV A   L+ +TKSTWDKKV
Sbjct: 181 DSNILKYLQYQPRRFLTNSIRFKETVERATEMGFNPQQMQFVVAAKVLQEITKSTWDKKV 240

[Close]

BLAST of IVF0018371 vs. NCBI nr
Match: KAA0049469.1 (transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16148.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (877), Expect = 9.71e-115
Identity = 188/257 (73.15%), Postives = 198/257 (77.04%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MSN+FRRILLLRSPSPVF QGFS+SPLKSLRYLSTSSEIVSSP SAPLASNAVQLKNKRK
Sbjct: 1   MSNVFRRILLLRSPSPVFPQGFSQSPLKSLRYLSTSSEIVSSPESAPLASNAVQLKNKRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESK--------------- 120
             IALL++HGFSESQIS LDK+YPQILSANPEK LLPKLLF +SK               
Sbjct: 61  AVIALLADHGFSESQISSLDKRYPQILSANPEKILLPKLLFFQSKGLSSPEIAKLVCSFP 120

Query: 121 -------------------AVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVP 180
                              AV GSEEKTL  IK F  IL  DLRISVGPNIEILKQIGVP
Sbjct: 121 RVLAGSLDNRIIPAFDYIQAVLGSEEKTLAFIKYFGSILTHDLRISVGPNIEILKQIGVP 180

Query: 181 DSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKV 223
           DSNILKY Q QPR F  NSIRFKETVERVTEMGFNPQ++ F+ A+F LR MTKSTWDKKV
Sbjct: 181 DSNILKYFQYQPRVFSRNSIRFKETVERVTEMGFNPQRLQFLVAVFALRAMTKSTWDKKV 240

[Close]

BLAST of IVF0018371 vs. NCBI nr
Match: KAA0049473.1 (transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16152.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 341 bits (875), Expect = 1.95e-114
Identity = 185/257 (71.98%), Postives = 199/257 (77.43%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MSNLFR ILLL+SPSPVFSQGFS SPLKS+R+LSTSSEIVSS  SAPLASNA QLKNKRK
Sbjct: 1   MSNLFRVILLLKSPSPVFSQGFSGSPLKSIRFLSTSSEIVSSTESAPLASNAAQLKNKRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESK--------------- 120
             IALL+++G SESQIS LDK+YPQILSANPEKTLLPKLLF  SK               
Sbjct: 61  AVIALLADYGLSESQISVLDKRYPQILSANPEKTLLPKLLFFRSKGLSSPEIAKMVCSFP 120

Query: 121 -------------------AVFGSEEKTLITIKRFAGILVWDLRISVGPNIEILKQIGVP 180
                              A+ GSEEKTL+ IKRFAGIL WDLRIS GP+IEILKQ GVP
Sbjct: 121 RVFIGSLDKRIIPNFKYIQAMLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVP 180

Query: 181 DSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKV 223
           DSNILKYLQ QPR FL N IRFKE+VERVTEMGFNPQQM F+ A+F LR MTKSTWDKKV
Sbjct: 181 DSNILKYLQFQPRLFLTNPIRFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKV 240

[Close]

BLAST of IVF0018371 vs. NCBI nr
Match: XP_016898977.1 (PREDICTED: uncharacterized protein LOC103483822 [Cucumis melo])

HSP 1 Score: 340 bits (872), Expect = 2.43e-114
Identity = 179/229 (78.17%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   MSNLFRRILLLRSPSPVFSQGFSESPLKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK 60
           MS LFRRILLLRSPS VFS GFSE PLKSLR+LSTSSE+VSSP SA LASNAV LKN RK
Sbjct: 1   MSYLFRRILLLRSPSSVFSHGFSECPLKSLRFLSTSSEVVSSPKSASLASNAVWLKNNRK 60

Query: 61  DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKA------VFGSEEKT 120
           D IALL+NHGFS+SQISDL K+ PQI SANPE++LLPKLLFL+SKA      V G+EEK 
Sbjct: 61  DVIALLANHGFSQSQISDLAKRLPQIFSANPEESLLPKLLFLQSKAFDYIQAVLGTEEKA 120

Query: 121 LITIKRFAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETVER 180
           +  IKRFAGIL  DLRISVGPNIEILKQIGVPDSNI  YLQ+QPR F ++SIRFKE VER
Sbjct: 121 VAAIKRFAGILTQDLRISVGPNIEILKQIGVPDSNISTYLQQQPRMFFVSSIRFKEIVER 180

Query: 181 VTEMGFNPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLSEEEIRLAF 223
           VTEMGFNPQ++ F+ A+F LR MTKSTWDKKVEVYRKWGLSEEEIRLAF
Sbjct: 181 VTEMGFNPQRLQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEIRLAF 229

[Close]

BLAST of IVF0018371 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-25
Identity = 78/232 (33.62%), Postives = 113/232 (48.71%), Query Frame = 0


Query: 29  SLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK--DAIALLSNHGFSESQISDLDKKYPQI 88
           +L YL  S  +  SP SA +AS  + L +  +    + LL +HGF+ +QIS L KK P +
Sbjct: 71  TLNYLIDSCGL--SPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVL 130

Query: 89  LSANPEKTLLPKLLFLES----------------------------------KAVFGSEE 148
           L AN E  LLPKL F  S                                  K+V  S+E
Sbjct: 131 LLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDE 190

Query: 149 KTLITIKRFAGILVWDLRISVGPNIEILKQIGVPDSNILKYLQRQPRSFLINSIRFKETV 208
           K +  ++R   + + D   ++ PNI  + + GVP+  I   L   P + +  +  F+   
Sbjct: 191 KIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIA 250

Query: 209 ERVTEMGFNPQQMLFVFALFGLRGM-TKSTWDKKVEVYRKWGLSEEEIRLAF 224
           ++  EMGFNPQ+  FV A+  L G   KS WDK  EVY++WG SE++I  AF
Sbjct: 251 KQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAF 300

[Close]

BLAST of IVF0018371 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-17
Identity = 70/255 (27.45%), Postives = 117/255 (45.88%), Query Frame = 0


Query: 4   LFRRILLLRSPSPVFSQGFSESP--LKSLRYLSTSSEIVSSPTSAPLASNAVQLKNKRK- 63
           L  RI  L S S V S+   +    L+S            S  SA   S  V+L + +K 
Sbjct: 29  LVGRIRTLCSVSQVKSENLEKQKPCLESFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKP 88

Query: 64  -DAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLES--------------- 123
              +AL  +HGF+  QI+ + K +P++LS +PE  + PKL+F  S               
Sbjct: 89  DSVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSS 148

Query: 124 -------------------KAVFGSEEKTLITIKRFAGILVWDLRIS--VGPNIEILKQI 183
                              K++   EE  +  +KR  GI  + L+I+  V   + I +++
Sbjct: 149 PKMLSYSLHKRLIPCYDSLKSILVEEESVVKCLKR--GIRCFSLKITHCVSLRVSICREL 208

Query: 184 GVPDSNILKYLQRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWD 219
           GVPD +I   +Q  P +F     RF E + RV   GF+P++  FV A+      ++S  +
Sbjct: 209 GVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAME 268

[Close]

BLAST of IVF0018371 vs. TAIR 10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 82.0 bits (201), Expect = 6.5e-16
Identity = 60/188 (31.91%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 65  LLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSE------------- 124
           LL ++GF +SQIS + + YP++L  + EK+L PKL FL+S+    SE             
Sbjct: 90  LLRSNGFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILD 149

Query: 125 ---EKTLITIKRFAGILVWD---LRISVGP--------NIEILKQIGVPDSNILKYL--Q 184
              E+++     F   ++ D   L IS           NI +L+++GVP   +   L  +
Sbjct: 150 KKGEESVSLYYDFVKDIMQDGKSLCISCPEGKKGNRIRNISVLRELGVPQKLLFSLLISR 209

Query: 185 RQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKSTWDKKVEVYRKWGLS 224
            QP   +    +F+E++++V +MGF+P +  FV AL  +  M++ T ++KV VY++ G S
Sbjct: 210 YQP---VCGKEKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFS 269

[Close]

BLAST of IVF0018371 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-15
Identity = 58/202 (28.71%), Postives = 96/202 (47.52%), Query Frame = 0


Query: 56  KNKRKDAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSE---- 115
           KN     + LL++HGF+ SQIS + + YPQ+L A+ EK+L PKL FL+S+    SE    
Sbjct: 81  KNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEI 140

Query: 116 ----------------------------EKTLITIKRFAGILVWDLRISVGPNIEILKQI 175
                                       EK+    K    +   +L   +  N+ +L+++
Sbjct: 141 VSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNEKLCHSLPQGNLENKI-RNVSVLREL 200

Query: 176 GVPDSNILKYL--QRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKST 224
           G+P   +   L    QP   +    +F+ET+++V EMGF+P    FV AL  +  M + T
Sbjct: 201 GMPHKLLFSLLISDSQP---VCGKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKT 260

[Close]

BLAST of IVF0018371 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-15
Identity = 58/202 (28.71%), Postives = 96/202 (47.52%), Query Frame = 0


Query: 56  KNKRKDAIALLSNHGFSESQISDLDKKYPQILSANPEKTLLPKLLFLESKAVFGSE---- 115
           KN     + LL++HGF+ SQIS + + YPQ+L A+ EK+L PKL FL+S+    SE    
Sbjct: 81  KNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEI 140

Query: 116 ----------------------------EKTLITIKRFAGILVWDLRISVGPNIEILKQI 175
                                       EK+    K    +   +L   +  N+ +L+++
Sbjct: 141 VSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNEKLCHSLPQGNLENKI-RNVSVLREL 200

Query: 176 GVPDSNILKYL--QRQPRSFLINSIRFKETVERVTEMGFNPQQMLFVFALFGLRGMTKST 224
           G+P   +   L    QP   +    +F+ET+++V EMGF+P    FV AL  +  M + T
Sbjct: 201 GMPHKLLFSLLISDSQP---VCGKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKT 260

The following BLAST results are available for this feature:

BLAST of IVF0018371 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U135	1.7e-117	100.00	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3CWB6	2.5e-92	74.32	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S4DSL9	2.5e-92	74.32	uncharacterized protein LOC107990389 OS=Cucumis melo OX=3656 GN=LOC107990389 PE=...	[more]
A0A5A7U7J7	1.4e-90	73.15	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7U0W3	2.4e-90	71.98	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of IVF0018371 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049482.1	7.30e-148	100.00	transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16162.1 tr...	[more]
XP_016898958.1	5.13e-117	74.32	PREDICTED: uncharacterized protein LOC107990389 [Cucumis melo] >KAA0049483.1 tra...	[more]
KAA0049469.1	9.71e-115	73.15	transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16148.1 tr...	[more]
KAA0049473.1	1.95e-114	71.98	transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16152.1 tr...	[more]
XP_016898977.1	2.43e-114	78.17	PREDICTED: uncharacterized protein LOC103483822 [Cucumis melo]	[more]

BLAST of IVF0018371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	3.5e-25	33.62	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	5.9e-17	27.45	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	6.5e-16	31.91	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	7.2e-15	28.71	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	7.2e-15	28.71	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 107..223 e-value: 6.1E-15 score: 57.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 64..220 e-value: 1.4E-13 score: 50.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 107..223 coord: 30..108
None	No IPR available	PANTHER	PTHR13068:SF160	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 107..223
None	No IPR available	PANTHER	PTHR13068:SF160	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 30..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018371.2	IVF0018371.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding