IVF0018325 (gene) Melon (IVF77) v1

Overview


Name	IVF0018325
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP-dependent helicase/nuclease subunit A isoform 1
Location	chr02: 20771832 .. 20773767 (+)
RNA-Seq Expression	IVF0018325
Synteny	IVF0018325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCGGGTTGGCGGACCATGCCCATTACCCATATCCATACCCATCCCCAGGTTTCTTCAGCGAAGCAATTCCATTTCAAAAGGAATTGGAGCTGTGAATTTGGGAAAATGGTCGGCAGTTCTCGTAAATGGGCTTATACGCGGATCATCGCCGGCACCATTGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGGTAACCCCACTTCTCTTCAATTTCAGCTTTCTAATCATCTCTACGCGAATCAATTTTGTAGGTTATGTATGGTATGATTGTGGGTTCTTTTTTTATTCTTTTTTTTCTTTTCTTCTATTTGCTTTTTTGGGGCTGATGCAGGAGAAGATGAAAGAGAGGTTAAAACAATACGAGAACGAACTGAAGAAGAAAGAGAAAATGAAAGAACTTGAAGACTCGCTATAGTGTGAGTGTCGTACACTTTTCCTATTTGGGTGTTCTGATTATACAGAGCCGAAGTTGAAGTTCGAGAGTTTTTTGCATTGGCTTTAGAAATTGAGCTCATAAGAACACTCCAATCATTCCATATCAATTAGGGCGCTGGAGTATAGAACTGGATTTGGGAATAAAGTAATGTGGGCTGAAAAGAAAAGAACTGGGTTGCAATTTTGTTTCTCTTTTCTACAATTTATCACTGATTAACAGCATGTGTATTTTGTTGTGTGATTAGTTTATGATTTATTCCTTTGATTAATGGCAAGCCCTTTAAGTTAACTGTCTTTGTGCTTATGTGATTTTCGATTTTGTACATTGATGTGAACTCCGATTCTTGAATGAGCACTATGATTAGGATGATTTATTCGGTGGGAGATTCAACACAATATGGCTAACAAATTTTCACCGTTGAATGTGGAGAGGAAGAATTGAGAAGTGCTTTATATTTATATTTGGTGGTTATTCGATAGCATGCGTATTATTGGATAATTTCTCTTTGACTGGCACTAGTATGGTTAGATTTCATCACAGGTTTTGGCTTATAGAACCTAAGGATAGGCTTTTGAGAAAGAAGTCTATGCTAGCTAACTGGGCCTTTTTGTGTATGCTTTGTCGAAAGGTCGAAGACCTGAATCACCTTTTCTAGTGTTAGTTTGTGAAACCCGTGTGGAAATATTTATTTCCAGAGTCCAATCTCGAGTTAGCTCACTGAGGAATGTTTCCAAGACAATCGAAGAGTTTCTTTTTCGTCCACCTTTCAAAGAGAGACTGCTTTTTATGGTTTGTTGTGGTGTGTACTTTATTGTGGGATACGTATGAGAAGAGGAACAACCAAGTGTTTAGAGGTTGGAGAGGGACTCAGGTTGGTCCTTGGTGAGGTTCCATGTTTCTTTTTGGGTTTCAGTTTTGAAGATGTTTTGTAATTCTTCTATAGTTAGCATCTTACTTAGCTGGAAACCATTTCTTTAAATGAGTTTTTGTAGGCTTGGTTTTTTTCTTTTGGTATGCCTTTGAATTCTTTCATTTTTTTTCTCTATGAAAGCTGGAAGGAGAAAACGAGGTAGATGACCCAACAAGCCATGGTCATGAATGTGATGGCTTTATCTCCTTTCAGGAAAGGATTATCTATGTATAAAGGAACAGATTTGGCCGTTGATAGTTCATGAAATTCTTCAGTTCTTCTCAAGGAAAAGATGGTGTTCCTATGGTTCTGATTTGTTCCTCATCATCTTAATCAATGATTAAGATTGTTCTTCTACTTATTATTTAATTTTTGTGTGAGAAGCAGAGATCTATACACTTCAACAGATCCACCTTCATCTCCTATGTTCAAGTGGGTTTGGTGCGCCAGTGTAGAGTTTCAAACTTCACAGTTATGTTGCAATTTCTTTAAACGTGGTTGGCCAAAAGTTTGGATTTGTAAAGGCATTTAAATTTTGTAAAAGAATTAGAGTAAATGACTCCTA

mRNA sequence

AGTCGGGTTGGCGGACCATGCCCATTACCCATATCCATACCCATCCCCAGGTTTCTTCAGCGAAGCAATTCCATTTCAAAAGGAATTGGAGCTGTGAATTTGGGAAAATGGTCGGCAGTTCTCGTAAATGGGCTTATACGCGGATCATCGCCGGCACCATTGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGGAGAAGATGAAAGAGAGGTTAAAACAATACGAGAACGAACTGAAGAAGAAAGAGAAAATGAAAGAACTTGAAGACTCGCTATAGTCTGGAAGGAGAAAACGAGGTAGATGACCCAACAAGCCATGGTCATGAATGTGATGGCTTTATCTCCTTTCAGGAAAGGATTATCTATGTATAAAGGAACAGATTTGGCCGTTGATAGTTCATGAAATTCTTCAGTTCTTCTCAAGGAAAAGATGGTGTTCCTATGGTTCTGATTTGTTCCTCATCATCTTAATCAATGATTAAGATTGTTCTTCTACTTATTATTTAATTTTTGTGTGAGAAGCAGAGATCTATACACTTCAACAGATCCACCTTCATCTCCTATGTTCAAGTGGGTTTGGTGCGCCAGTGTAGAGTTTCAAACTTCACAGTTATGTTGCAATTTCTTTAAACGTGGTTGGCCAAAAGTTTGGATTTGTAAAGGCATTTAAATTTTGTAAAAGAATTAGAGTAAATGACTCCTA

Coding sequence (CDS)

ATGCCCATTACCCATATCCATACCCATCCCCAGGTTTCTTCAGCGAAGCAATTCCATTTCAAAAGGAATTGGAGCTGTGAATTTGGGAAAATGGTCGGCAGTTCTCGTAAATGGGCTTATACGCGGATCATCGCCGGCACCATTGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGGAGAAGATGAAAGAGAGGTTAAAACAATACGAGAACGAACTGAAGAAGAAAGAGAAAATGAAAGAACTTGAAGACTCGCTATAG

Protein sequence

MPITHIHTHPQVSSAKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELEDSL

Homology

[Close]

BLAST of IVF0018325 vs. ExPASy TrEMBL
Match: A0A1S3BW37 (uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MPITHIHTHPQVSSAKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHR 60
          MPITHIHTHPQVSSAKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHR
Sbjct: 1  MPITHIHTHPQVSSAKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHR 60

Query: 61 VEVGYKEKMKERLKQYENELKKKEKMKELEDSL 94
          VEVGYKEKMKERLKQYENELKKKEKMKELEDSL
Sbjct: 61 VEVGYKEKMKERLKQYENELKKKEKMKELEDSL 93

[Close]

BLAST of IVF0018325 vs. ExPASy TrEMBL
Match: A0A5A7USD3 (ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00320 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90
          MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 60

Query: 91 DSL 94
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of IVF0018325 vs. ExPASy TrEMBL
Match: A0A6J1JJ44 (uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-23
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 7   HTHPQVSS-AKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGY 66
           H +  VS+  K  + +R  SCE  KM+GSSR WAY RIIAGTIVGGVLGFYVMHRVEVGY
Sbjct: 20  HPNNTVSTLPKDLNLRREGSCEIWKMMGSSRTWAYMRIIAGTIVGGVLGFYVMHRVEVGY 79

Query: 67  KEKMKERLKQYENELKKKEKMKELEDS 93
           KEKMKERL+QYE ELKKKE+MKELEDS
Sbjct: 80  KEKMKERLRQYEIELKKKEQMKELEDS 106

[Close]

BLAST of IVF0018325 vs. ExPASy TrEMBL
Match: A0A6J1E2A1 (uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC111430128 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90
          M+GSSR WAY RIIAGTIVGGVLGFYVMHRVEVGYKEKMKERL+QYE ELKKKE+MKELE
Sbjct: 1  MMGSSRSWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 60

Query: 91 DS 93
          DS
Sbjct: 61 DS 62

[Close]

BLAST of IVF0018325 vs. ExPASy TrEMBL
Match: A0A6J1BYI4 (uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006898 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.0e-20
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90
          MVG+ RKWAY RII GTIVGGVLGFYVMHRVEVGYKEK+KERL+QYE ELKKKE+MKELE
Sbjct: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60

Query: 91 DSL 94
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of IVF0018325 vs. NCBI nr
Match: XP_008453375.1 (PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo] >XP_008453376.1 PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo])

HSP 1 Score: 184 bits (468), Expect = 1.10e-58
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MPITHIHTHPQVSSAKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHR 60
          MPITHIHTHPQVSSAKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHR
Sbjct: 1  MPITHIHTHPQVSSAKQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHR 60

Query: 61 VEVGYKEKMKERLKQYENELKKKEKMKELEDSL 93
          VEVGYKEKMKERLKQYENELKKKEKMKELEDSL
Sbjct: 61 VEVGYKEKMKERLKQYENELKKKEKMKELEDSL 93

[Close]

BLAST of IVF0018325 vs. NCBI nr
Match: KAG7023244.1 (hypothetical protein SDJN02_14269, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (301), Expect = 2.28e-33
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 16 KQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQ 75
          K  + +R  SCE  KM+GSSR WAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERL+Q
Sbjct: 4  KDLNLRRKGSCEIWKMMGSSRSWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQ 63

Query: 76 YENELKKKEKMKELEDS 92
          YE ELKKKE+MKELEDS
Sbjct: 64 YEIELKKKEQMKELEDS 80

[Close]

BLAST of IVF0018325 vs. NCBI nr
Match: KAA0058058.1 (ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >TYK28404.1 ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 3.96e-33
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90
          MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 60

Query: 91 DSL 93
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of IVF0018325 vs. NCBI nr
Match: XP_022987318.1 (uncharacterized protein LOC111484905 [Cucurbita maxima])

HSP 1 Score: 117 bits (294), Expect = 5.67e-32
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 16  KQFHFKRNWSCEFGKMVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQ 75
           K  + +R  SCE  KM+GSSR WAY RIIAGTIVGGVLGFYVMHRVEVGYKEKMKERL+Q
Sbjct: 30  KDLNLRREGSCEIWKMMGSSRTWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQ 89

Query: 76  YENELKKKEKMKELEDS 92
           YE ELKKKE+MKELEDS
Sbjct: 90  YEIELKKKEQMKELEDS 106

[Close]

BLAST of IVF0018325 vs. NCBI nr
Match: XP_038882309.1 (uncharacterized protein LOC120073547 [Benincasa hispida])

HSP 1 Score: 114 bits (284), Expect = 5.41e-31
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90
          M+GSSRKWAY RIIAGTIVGGVLGFYVMHRVE+GYKEKMKERLKQYENELKKKE+MKELE
Sbjct: 1  MIGSSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 91 DSL 93
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of IVF0018325 vs. TAIR 10
Match: AT3G18510.1 (unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKEL 90
          M  SS  W Y RIIAGT++GG LGFYVMHR+EV YK +M+E L QYE +++K+++ + L
Sbjct: 1  MALSSMTWGYARIIAGTLLGGALGFYVMHRIEVSYKMRMEEALNQYEKDMQKRQEEENL 59

The following BLAST results are available for this feature:

BLAST of IVF0018325 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW37	5.3e-44	100.00	uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=...	[more]
A0A5A7USD3	6.1e-24	100.00	ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa ...	[more]
A0A6J1JJ44	1.8e-23	74.71	uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905...	[more]
A0A6J1E2A1	5.4e-20	90.32	uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A6J1BYI4	7.0e-20	87.30	uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of IVF0018325 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453375.1	1.10e-58	100.00	PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo] >XP_008453376.1 P...	[more]
KAG7023244.1	2.28e-33	81.82	hypothetical protein SDJN02_14269, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0058058.1	3.96e-33	100.00	ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >...	[more]
XP_022987318.1	5.67e-32	80.52	uncharacterized protein LOC111484905 [Cucurbita maxima]	[more]
XP_038882309.1	5.41e-31	93.65	uncharacterized protein LOC120073547 [Benincasa hispida]	[more]

BLAST of IVF0018325 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18510.1	5.3e-12	55.93	unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018325.1	IVF0018325.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004386	helicase activity