IVF0018200 (gene) Melon (IVF77) v1

Overview
NameIVF0018200
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGlycine-rich cell wall structural protein-like
Locationchr06: 22550157 .. 22550900 (+)
RNA-Seq ExpressionIVF0018200
SyntenyIVF0018200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTTTGCTACAATAATATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTCCACCGTCCCAGATATGGAGGTGGGGGATTGGGCGGAGGCGGTGGTGGAGGGTTCGGTGGAGGCGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGATTTGGTGGTGGAGGTGGTGGTGGACTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTCGGCAGTGGCGCCGGTACAGGAGGTGGATTCCCTTGAAGGATATGATATTTGTACTACCAAAGGAGAACAAAAAAGTGTCTTTAAGAAACCCCATCTCATATCATAGTTTTTGGTATATTATATTATAGTTTTTGCATGTGCAATAATGTGGTTTGGCGTTTGTTGTTCTAAAATTAGAATTAGGTTTCATATGTGGAAAAACTCTCTTTTTAGCTCACAATTTCTTATATTTCTAATTGTAATTTCCAAGAAATTAAAAGAGAATAAATTATTTCTAAG

mRNA sequence

ATTGTTTGCTACAATAATATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTCCACCGTCCCAGATATGGAGGTGGGGGATTGGGCGGAGGCGGTGGTGGAGGGTTCGGTGGAGGCGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGATTTGGTGGTGGAGGTGGTGGTGGACTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTCGGCAGTGGCGCCGGTACAGGAGGTGGATTCCCTTGAAGGATATGATATTTGTACTACCAAAGGAGAACAAAAAAGTGTCTTTAAGAAACCCCATCTCATATCATAGTTTTTGGTATATTATATTATAGTTTTTGCATGTGCAATAATGTGGTTTGGCGTTTGTTGTTCTAAAATTAGAATTAGGTTTCATATGTGGAAAAACTCTCTTTTTAGCTCACAATTTCTTATATTTCTAATTGTAATTTCCAAGAAATTAAAAGAGAATAAATTATTTCTAAG

Coding sequence (CDS)

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTCCACCGTCCCAGATATGGAGGTGGGGGATTGGGCGGAGGCGGTGGTGGAGGGTTCGGTGGAGGCGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGATTTGGTGGTGGAGGTGGTGGTGGACTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTCGGCAGTGGCGCCGGTACAGGAGGTGGATTCCCTTGA

Protein sequence

MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGGLGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP
Homology
[Close]
BLAST of IVF0018200 vs. ExPASy TrEMBL
Match: A0A5A7VJD1 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001320 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.9e-36
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120

Query: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 161
           LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160

[Close]
BLAST of IVF0018200 vs. ExPASy TrEMBL
Match: A0A5D3BB90 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002250 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 150/160 (93.75%), Postives = 154/160 (96.25%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFFHRPR+GGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
           LGGGSGGGFGGGSGFGGGVGGGA  GGGGGFGGGGGGG+GGGSGFGGGAGFGGGSGGGGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGA--GGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGG 120

Query: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 161
           L  GGGAGGGGGFGGGGGGGLGGGAGGGFG GAG GGG+P
Sbjct: 121 L--GGGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGYP 156

[Close]
BLAST of IVF0018200 vs. ExPASy TrEMBL
Match: A0A0A0L2A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 141/166 (84.94%), Postives = 146/166 (87.95%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPR+GGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGS--GFGGGAGFGGGS--- 120
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGG+  GFGGGAG G      
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGDEKFFR 120

Query: 121 ---GGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGG 159
               GGGGLGG    GGGGGFGGGGGGGLGGG+GGGFG G+G GGG
Sbjct: 121 RPRFGGGGLGG----GGGGGFGGGGGGGLGGGSGGGFGGGSGFGGG 162

[Close]
BLAST of IVF0018200 vs. ExPASy TrEMBL
Match: A0A6J1DAT8 (glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 127/161 (78.88%), Postives = 133/161 (82.61%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKI+FLV L AFL TTS ARKL+T SF D+KFFHRP +G    GGGGGGGFGGGGGGG
Sbjct: 1   MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFG----GGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGA--GFGGGSGGG 120
           L    GGGFGGGSGFGGG GGGAGGG GGGF GGGGGGLGGG G GGGA  GFGGG+G G
Sbjct: 61  L----GGGFGGGSGFGGGAGGGAGGGAGGGF-GGGGGGLGGGGGIGGGAGGGFGGGAGAG 120

Query: 121 GGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGF 160
           GGLGGGGGAGGGGGFGGG GGGLGGG+  GFG GAG GGGF
Sbjct: 121 GGLGGGGGAGGGGGFGGGRGGGLGGGS--GFGGGAGAGGGF 150

[Close]
BLAST of IVF0018200 vs. ExPASy TrEMBL
Match: B9SVA0 (GRP3S, putative OS=Ricinus communis OX=3988 GN=RCOM_1303490 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 129/170 (75.88%), Postives = 139/170 (81.76%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKL--STASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGG 60
           MASK+  ++ LGAF+ T++ AR L    ASF+DEKFF RPR  GGGLGGGGGGGFGGGGG
Sbjct: 1   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPR-SGGGLGGGGGGGFGGGGG 60

Query: 61  GGLGGGSGGGFGGGSGFGGGVGGGAGG------GGGGGFGGGGGGGLGGGSGFGGGA--G 120
           GGLGG  GGG GGG+GFGGG GGGAGG      GGGGGFGGGGGGGLGGGSGFGGGA  G
Sbjct: 61  GGLGG--GGGAGGGAGFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGG 120

Query: 121 FGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 161
           FGGG+G GGGL  GGGAGGGGGFGGGGGGGLGGGAGGGFG+G G GGG P
Sbjct: 121 FGGGAGAGGGL--GGGAGGGGGFGGGGGGGLGGGAGGGFGAGGGLGGGLP 165

[Close]
BLAST of IVF0018200 vs. NCBI nr
Match: KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 1.43e-46
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120

Query: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160
           LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160

[Close]
BLAST of IVF0018200 vs. NCBI nr
Match: XP_011650511.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 144 bits (364), Expect = 7.80e-41
Identity = 153/160 (95.62%), Postives = 155/160 (96.88%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPR+GGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGG  
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGG-- 120

Query: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160
           LGGGGGAGGGGGFGGGGGGGLGGGAGGGFG GAG GGGFP
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP 158

[Close]
BLAST of IVF0018200 vs. NCBI nr
Match: KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (354), Expect = 2.40e-39
Identity = 150/160 (93.75%), Postives = 154/160 (96.25%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFFHRPR+GGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
           LGGGSGGGFGGGSGFGGGVGGGAGGG  GGFGGGGGGG+GGGSGFGGGAGFGGGSGGGGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGG--GGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGG 120

Query: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160
           LGGG  AGGGGGFGGGGGGGLGGGAGGGFG GAG GGG+P
Sbjct: 121 LGGG--AGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGYP 156

[Close]
BLAST of IVF0018200 vs. NCBI nr
Match: XP_022151305.1 (glycine-rich protein 5 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 1.83e-16
Identity = 127/161 (78.88%), Postives = 133/161 (82.61%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
           MASKI+FLV L AFL TTS ARKL+T SF D+KFFHRP +GGGG    GGGGFGGGGGGG
Sbjct: 1   MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFGGGG----GGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAG--FGGGSGGG 120
           LGGG    FGGGSGFGGG GGGAGGG GGGFGGGGGG LGGG G GGGAG  FGGG+G G
Sbjct: 61  LGGG----FGGGSGFGGGAGGGAGGGAGGGFGGGGGG-LGGGGGIGGGAGGGFGGGAGAG 120

Query: 121 GGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGF 159
           GGLGGGGGAGGGGGFGGG GGGLGGG+G  FG GAG GGGF
Sbjct: 121 GGLGGGGGAGGGGGFGGGRGGGLGGGSG--FGGGAGAGGGF 150

[Close]
BLAST of IVF0018200 vs. NCBI nr
Match: EEF32473.1 (GRP3S, putative [Ricinus communis])

HSP 1 Score: 76.6 bits (187), Expect = 3.79e-14
Identity = 128/170 (75.29%), Postives = 139/170 (81.76%), Query Frame = 0 

Query: 1   MASKIVFLVFLGAFLFTTSGARKLST--ASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGG 60
           MASK+  ++ LGAF+ T++ AR L +  ASF+DEKFF RPR GGG LGGGGGGGFGGGGG
Sbjct: 1   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPRSGGG-LGGGGGGGFGGGGG 60

Query: 61  GGLGGGSGGGFGGGSGFGGGVGGGAGGG------GGGGFGGGGGGGLGGGSGFGGGAG-- 120
           GGLGGG G   GGG+GFGGG GGGAGGG      GGGGFGGGGGGGLGGGSGFGGGAG  
Sbjct: 61  GGLGGGGG--AGGGAGFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGG 120

Query: 121 FGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160
           FGGG+G GGGLGGG  AGGGGGFGGGGGGGLGGGAGGGFG+G G GGG P
Sbjct: 121 FGGGAGAGGGLGGG--AGGGGGFGGGGGGGLGGGAGGGFGAGGGLGGGLP 165

The following BLAST results are available for this feature:
BLAST of IVF0018200 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VJD11.9e-36100.00Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A5D3BB901.2e-3093.75Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0L2A71.1e-2084.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1[more]
A0A6J1DAT86.4e-1378.88glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1[more]
B9SVA03.5e-1175.88GRP3S, putative OS=Ricinus communis OX=3988 GN=RCOM_1303490 PE=4 SV=1[more]
BLAST of IVF0018200 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065825.11.43e-46100.00glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa][more]
XP_011650511.17.80e-4195.63glycine-rich cell wall structural protein-like [Cucumis sativus][more]
KAA0065824.12.40e-3993.75glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96... [more]
XP_022151305.11.83e-1678.88glycine-rich protein 5 [Momordica charantia][more]
EEF32473.13.79e-1475.29GRP3S, putative [Ricinus communis][more]
BLAST of IVF0018200 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 89..104
score: 53.91
coord: 146..160
score: 34.87
coord: 3..19
score: 33.09
coord: 116..126
score: 45.45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018200.1IVF0018200.1mRNA