IVF0018162 (gene) Melon (IVF77) v1

Overview


Name	IVF0018162
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA replication complex GINS protein SLD5
Location	tig00000267: 190273 .. 194412 (-)
RNA-Seq Expression	IVF0018162
Synteny	IVF0018162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCATTCCGCTGCTGCCTTTGGCTCTTCCTTTTTCTCCCAAAGACGAAACACAGTTGTAAGTATTCCTTCGATTTTTCATAGGAATTTTCTTTTCTAGAACAATTTTTCATAGGAATTTTCTTTTTTAGAAGTTGGTTTTTGCTGAATTCTCTGTTTTTGTTTATTCTCGTGTTGGGAGGGTTTTAATATTGAGCTACGAAGCTTGAGGTTGGGGGCAAAGGGTAGGGTGTGAAGGAGTCAGGGAGTTGAGGGATTAGGGCCTTTCTTTCTGGATCAAATTTTAGAGATTCTGTTGCCATTTCTTCTTATCCCTTTTAGTTTTCTTAGATTTATCCAATTTTCCGTCAGAATTTTAAGTGAGATTACTTATTTTTCATGTTTGAGTTGCTTGAGTATTTAATTGTATGTTTTGTTTGATATTACTTCTTGCATCTTTTGTTATTTAAGTCTATGAGAATAGTTAACCCTACAGCTACAAAGCATTTAATTCGTGCTTATTGGATTGGGCGAGCTCTTATTAGTTTATCCCTTTTTTGTTGTCATCCCCATTGAAAGCCTTTGATCCACTTTTCCACATGTGTTTTTATCTTAAACGTAGCGGCCATTGCATGGTCACAGACTCATAGATATTAAGACCTTGTAAAAATGGGGTAACAAGATTTTGCAAAATTCTTAACATTGATCTAAGTTTGGCATCTTAAGTCACAATTAACTTCTCATCTCAGTTTGTTATGGTATTGACAGGAGAACAGTCTTTGAGAGTCGGCAGAATAATTGGAGAATATGGCATCAAATTTGGGAGGGGCATCGATATCACAAACAGATGATTTCGAGACGTTCACACCAACGACTGATGTTGAGCCTCTAAAGAGGGCTTGGCGTAATGAAAAGGCTGCTCCTGAGATTCTACCCTATGAGGCATCTTGGTTGGGAGAATCAAAGAGCAGATCCAAGCAATGGTATTCCAAAGTTCAGCTTTAATATTCAATGCATGTTTAGTTCCCTAGCAAAGAAAAACAGTTACAATATCGCACCTGTTGTAATCCCCATGGTGTTATTTATCAAATAATTGAATATCTCTGGAACTTTAGTAATTCATGATTTCATTTTTATAAAATGTAGTTTCTGAAATTGCGATTTTGGTTTTTATATTCGATTCTCAAAATTTATTATTTAATTTTATATGGAGGTTTTGTACTTGTCCAATTAACGCTCTTTTGGTTCATATGGCACAATTTTAGCATGCAGATCATCTTGGTCATGAACTAAAAATACATTTTGATACATTTTTTTTTAAATGTAATAGTTCTTCAATTGTGTGGTCCATTTTCTTTATTTATTGATTACTAATATTGATACCAGTTGCATCCATTCACAGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTCATTGTATCACTCTATCAAATGGATTTAGATAGGATACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGGTACAACTTACCTGTAGTTTAATTTTTCCACGGACAGTAGTTATACTTTTGTGTCTCATTTTTCTTCTCCTTTTTATATTTCGTATTAGTTATAATGATTTCATTGCATTTGAAATCATGGATGTGTACATTTCACACAATGACAGAAACATAGGGAACAGATCATGGCTTATGTGACCAAGTTGGGAGAGGAAGAATTTGAATAATACCTCAATACGTCTTATTAAATTCAACAAAATGCAGCTTATACACAAGGCCTTTTTAAAACATACATAAGCCATAAATAAGATTGACAGAAATAAAGGCTACCGGCAGGTAACTAAGAATTACAGCAAGTAAAGAAATTAAACTACTTGAAAGCACACTTCTCCACCGAAGCATCCAACTTACTACATCAATGACCCAACTATAAAATCAATTTAATTCTCCAATTTTATACTACTACTTCTCTTCTTTTAATTTAAAACAATCTTCCTCCCCCAGATTGAGAAGTACATGCTCTATATCTTGAAGTCAGACGAACTTTTCAGACGTCTTTCTAAAGAAGAGATAACATTTACTGATAGGTGAATGCCATCATCATGTTGTTCATTTTTCTAGTAGTCTAGTAGTTTTTATTTTATTTTTTTTTTCTGGCATTTATGTTATGGTGCAGGTGTCGCCATGATATGAAGAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAAGCAATCTATTACAAGTGAAGAGGACGACATGGGTACTCAAATAGCTTCAAAATGATTTCTTTGATTTTTTTCCATAAAGCACTGCGATCACATGCTCTCACATTCTTGTTTAAATGTTCACATTCATGTTATGTATACCTCAATTTGAATATGCAGATGGTAATGCATGTTGACACTGCAATTCTTTTAGAAGGATCTATCTCGTTACAGAGCATTGATTAAACAGTCCATAATGGAAATGCAATATATTTTAAGAACTTATAAGTTCCAAAAGGAATTAGATTTCTTTCAGTATTTCTATCAGTGGAGCGTTTGTAAGATCGGCATAGGTGCTCAAAATTATAACTTGTTTGGATACAAATTCACGTGGTATTCTAGGATAGTTCAGATCAACTCCATGTAGGATTTTATTTTCATATTGCTGCCAATATTCTTTCACTGCATGCTTCCCAGTAGGATTTCTGGCCAGATGGCATGGATTTTGTGTTCCTTTATAAACTGCCAGGAGATAATTTTTTTTTTTTTACTTTAAATACTACTTTCTCCCTGTACTTTCAACTTTGGTTCATTTTTATTGATGCATGTTTTGTTTTAATGATTTTGGTATTGTCTGATTTAGTTCCAGAACCTCCATTGGACACGTTTGTGGTCTGCAAAAGTAAGGAATATCTTGAACACATACAGCTTGAGGATGAGGAAGAGAGAGCGTCAAGTAGAATGTAACTTTTCATTGTCCTCTTTTGTATTATTTTACTCCCTTTATAATTTCCTTTTTGCTATCATATATGACCATATCCTACAACATATCAAATTCTACAGAGAGGAGCCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTCTAAACAAAATCTCCATCGCGTATCAGGTTTCAACATCGGTACCCCTCACCATCTGTATTATCTTGCATCTTGTCTTGGTCAATTTGTATGCGATAAAAGACACCGTTCAAATTTGTTTTGGTAGTTTTATAGCATTAACGACTGTTCCATGAAGTGAATAATCTTAGAAGCAGTTTCAAGGTCTGAACCCATTCCTAGATGGTTTTTCAAAGTAGTCTAACCAGGATGTCTTATTGCTAGTAACTGTGTAGCATTAGTGCAACCAACTGCTACAATAGCCATGACATCTGCCTTCAACTTGACTTTTGACATATTTTTATTTTAAATTATAATTTGATTCAATCATACTTAGATTCAAACCTCTAAAATCTTTTGATCAAGGTTATAGTGTATTAACCATTTGAGTTATTTTAATATAGATTTGTTTGCGATTTATCTGTATTTGACCAAACATAAACATGGTGAAATTTATCCATATCATATAATATGTACCCCTGATACAAAAATTTCAGTTCCAACATAAAAAGTTTTTAAAAAATTTAAAAATTAAAAACTTGCATAGAATAAATCAAAAAGCTCCTTTACTAACTCCCTCTTATATTCTTTCCTTTTATTATTGTGATTTCATTTTAAAGGTGATGGAGACTATTGCATTGGTAGCTTGGATGCTAATTTCAACATTGGTTGAGGCTCATAAATGATAGGAATGGTGGAGCATTGAAGGGCATTATCAAATGCTGGTGAGCCATTTCAATCTGAAAACTCATGATATTAAATGAATGAATGTGGCATTACAGTGAAACCAAACAGTATAATTTATAGCAATCAATTACGCATCAGTTAGAAATTATAGATACTTTTAGATGTTGATTTACAAGTTTAGCCTATGAACTTTGCTAGTTGTATCTATTTGATACTTGAACATTTGAAAGTTTTCGATACCTCTTAACTTTTTGTTTTATATCTAATAGGTTATTGAGCTTTAAAAATA

mRNA sequence

CGCCATTCCGCTGCTGCCTTTGGCTCTTCCTTTTTCTCCCAAAGACGAAACACAGTTGAGAACAGTCTTTGAGAGTCGGCAGAATAATTGGAGAATATGGCATCAAATTTGGGAGGGGCATCGATATCACAAACAGATGATTTCGAGACGTTCACACCAACGACTGATGTTGAGCCTCTAAAGAGGGCTTGGCGTAATGAAAAGGCTGCTCCTGAGATTCTACCCTATGAGGCATCTTGGTTGGGAGAATCAAAGAGCAGATCCAAGCAATGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTCATTGTATCACTCTATCAAATGGATTTAGATAGGATACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGATTGAGAAGTACATGCTCTATATCTTGAAGTCAGACGAACTTTTCAGACGTCTTTCTAAAGAAGAGATAACATTTACTGATAGGTGTCGCCATGATATGAAGAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAAGCAATCTATTACAAGTGAAGAGGACGACATGGTTCCAGAACCTCCATTGGACACGTTTGTGGTCTGCAAAAGTAAGGAATATCTTGAACACATACAGCTTGAGGATGAGGAAGAGAGAGCGTCAAGTAGAATAGAGGAGCCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTCTAAACAAAATCTCCATCGCGTATCAGGTGATGGAGACTATTGCATTGGTAGCTTGGATGCTAATTTCAACATTGGTTGAGGCTCATAAATGATAGGAATGGTGGAGCATTGAAGGGCATTATCAAATGCTGGTGAGCCATTTCAATCTGAAAACTCATGATATTAAATGAATGAATGTGGCATTACAGTGAAACCAAACAGTATAATTTATAGCAATCAATTACGCATCAGTTAGAAATTATAGATACTTTTAGATGTTGATTTACAAGTTTAGCCTATGAACTTTGCTAGTTGTATCTATTTGATACTTGAACATTTGAAAGTTTTCGATACCTCTTAACTTTTTGTTTTATATCTAATAGGTTATTGAGCTTTAAAAATA

Coding sequence (CDS)

ATGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTCATTGTATCACTCTATCAAATGGATTTAGATAGGATACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGATTGAGAAGTACATGCTCTATATCTTGAAGTCAGACGAACTTTTCAGACGTCTTTCTAAAGAAGAGATAACATTTACTGATAGGTGTCGCCATGATATGAAGAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAAGCAATCTATTACAAGTGAAGAGGACGACATGGTTCCAGAACCTCCATTGGACACGTTTGTGGTCTGCAAAAGTAAGGAATATCTTGAACACATACAGCTTGAGGATGAGGAAGAGAGAGCGTCAAGTAGAATAGAGGAGCCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTCTAA

Protein sequence

MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL

Homology

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BLAST of IVF0018162 vs. ExPASy Swiss-Prot
Match: A2VE40 (DNA replication complex GINS protein SLD5 OS=Bos taurus OX=9913 GN=GINS4 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 57/178 (32.02%), Postives = 94/178 (52.81%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRR- 60
           +E   E   R+    L VS++QM+++RI+F+L SY+R RL KIEK+  + L+ ++  R  
Sbjct: 58  LEHMEENLKRAKKGDLKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHTLEKEKTRREE 117

Query: 61  ----LSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILKQSITSEEDDMVPEPPLD 120
               LS EE+ F      + + +  ++ L  +P N Q  D+L+          VP+P LD
Sbjct: 118 EPPILSPEELVFAKEFLANTETYLKDTALKHMPPNLQKVDLLR---------TVPKPDLD 177

Query: 121 TFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
            +V  + KE  E+I +E E +     +    ++E    H++RYR +  LV SG I L+
Sbjct: 178 AYVFLRVKERQENILVEPENDEQRDYV---IDLEEGSQHLMRYRTVAPLVASGAIQLI 223

[Close]

BLAST of IVF0018162 vs. ExPASy Swiss-Prot
Match: Q99LZ3 (DNA replication complex GINS protein SLD5 OS=Mus musculus OX=10090 GN=Gins4 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 58/178 (32.58%), Postives = 94/178 (52.81%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRR- 60
           +E   E   R+    L VS+++M+++RI+++L SY+R RL KIEK+  +IL+ +++    
Sbjct: 58  LEHMEENLRRAKKGDLKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEG 117

Query: 61  ----LSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILKQSITSEEDDMVPEPPLD 120
               LS EE  F        + HF    L  +P N Q  D+L+          VP+P LD
Sbjct: 118 EPSSLSPEEFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLLR---------AVPKPDLD 177

Query: 121 TFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           ++V  + KE  E+I +E E   A  + +   ++E    H+IRY+ I  LV SG + L+
Sbjct: 178 SYVFLRVKERQENILVEPE---ADEQRDYVIDLEVGSQHLIRYKTIAPLVASGAVQLI 223

[Close]

BLAST of IVF0018162 vs. ExPASy Swiss-Prot
Match: Q499W2 (DNA replication complex GINS protein SLD5 OS=Rattus norvegicus OX=10116 GN=Gins4 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-14
Identity = 57/178 (32.02%), Postives = 93/178 (52.25%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELF--- 60
           +E   E   R+    L VS+++M+++RI+++L SY+R RL KIEK+  +IL+ ++     
Sbjct: 58  LEHMEENLRRAKKGDLKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAG 117

Query: 61  --RRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILKQSITSEEDDMVPEPPLD 120
               LS EE  F        + HF    L  +P N Q  D+++          VP+P LD
Sbjct: 118 EPSSLSPEEFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLMR---------AVPKPDLD 177

Query: 121 TFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           ++V  + KE  E+I +E E   A  + +   ++E    H+IRY+ I  LV SG + L+
Sbjct: 178 SYVFLRVKERQENILVEPE---ADEQRDYVIDLEEGSQHLIRYKTIAPLVASGAVQLI 223

[Close]

BLAST of IVF0018162 vs. ExPASy Swiss-Prot
Match: Q9BRT9 (DNA replication complex GINS protein SLD5 OS=Homo sapiens OX=9606 GN=GINS4 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 51/176 (28.98%), Postives = 92/176 (52.27%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELF--- 60
           +E   E   R+  + L VS++QM+++RI+++L SY+R RL KIEK+  ++L+ ++     
Sbjct: 58  LEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEG 117

Query: 61  --RRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTF 120
               LS EE+ F      + + +     L  +P N Q +       +    VP+P LD++
Sbjct: 118 EPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKV-------DLFRAVPKPDLDSY 177

Query: 121 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           V  + +E  E+I +E + +     +    ++E    H+IRY+ I  LV SG + L+
Sbjct: 178 VFLRVRERQENILVEPDTDEQRDYV---IDLEKGSQHLIRYKTIAPLVASGAVQLI 223

[Close]

BLAST of IVF0018162 vs. ExPASy Swiss-Prot
Match: Q7ZT48 (DNA replication complex GINS protein SLD5 OS=Xenopus laevis OX=8355 GN=gins4 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-12
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 0


Query: 16  LIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELF-----RRLSKEEITFTDR 75
           L +S + M+++RI+++L SY+RSR+ KIEK+  +IL+ ++         LS EE  F   
Sbjct: 71  LKISFHHMEIERIRYMLSSYLRSRMLKIEKFFPHILEKEKSRGEGEPPHLSPEEFAFAKE 130

Query: 76  CRHDMKKHFDESVLSKLPNNYQ--DILKQSITSEEDDMVPEPPLDTFVVCKSKEYLEHIQ 135
              + +       L  +P N Q  D+LK          VP+P LD+FV  + KE   +I 
Sbjct: 131 YMTNTETLLKSVALRHMPPNLQTVDLLKS---------VPKPNLDSFVFLRVKEEQNNIL 190

Query: 136 LEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           +E E +  S   E   +ME    H+IRYR I  LV SG + L+
Sbjct: 191 VEPETDEQS---EYAIDMEVGSQHLIRYRTIAPLVASGAVKLI 221

[Close]

BLAST of IVF0018162 vs. ExPASy TrEMBL
Match: A0A1S3AVG5 (DNA replication complex GINS protein SLD5 OS=Cucumis melo OX=3656 GN=LOC103483259 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.4e-87
Identity = 169/171 (98.83%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           MED+IEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL
Sbjct: 59  MEDSIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 118

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQD+LKQSITSEEDDMVPEPPLDTFVVCKS
Sbjct: 119 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDVLKQSITSEEDDMVPEPPLDTFVVCKS 178

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 179 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of IVF0018162 vs. ExPASy TrEMBL
Match: A0A1S4DSZ1 (DNA replication complex GINS protein SLD5 OS=Cucumis melo OX=3656 GN=LOC103483259 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.6e-86
Identity = 168/170 (98.82%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 2   EDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLS 61
           ED+IEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLS
Sbjct: 32  EDSIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLS 91

Query: 62  KEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSK 121
           KEEITFTDRCRHDMKKHFDESVLSKLPNNYQD+LKQSITSEEDDMVPEPPLDTFVVCKSK
Sbjct: 92  KEEITFTDRCRHDMKKHFDESVLSKLPNNYQDVLKQSITSEEDDMVPEPPLDTFVVCKSK 151

Query: 122 EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 152 EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 201

[Close]

BLAST of IVF0018162 vs. ExPASy TrEMBL
Match: A0A0A0L8W0 (DNA replication complex GINS protein SLD5 OS=Cucumis sativus OX=3659 GN=Csa_3G121760 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 4.6e-86
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           MEDTIEEYSRSGIDPLIVSLYQMDLDR+QFLLRSYIRSRLQKIEKYMLYILKSDELF RL
Sbjct: 59  MEDTIEEYSRSGIDPLIVSLYQMDLDRVQFLLRSYIRSRLQKIEKYMLYILKSDELFGRL 118

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           S+EEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS
Sbjct: 119 SREEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 178

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 179 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of IVF0018162 vs. ExPASy TrEMBL
Match: A0A6J1J098 (DNA replication complex GINS protein SLD5 OS=Cucurbita maxima OX=3661 GN=LOC111480093 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 163/171 (95.32%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           MEDTIEEYSRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYMLYILKSDELFRRL
Sbjct: 59  MEDTIEEYSRSGIDPLIVSLYQMDLDRTQFLLRSYIRIRLQKIEKYMLYILKSDELFRRL 118

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           S+EEITFTDRC HDMKKHFDESVLSKLPNNYQDIL+QSI SEEDDMVPEPPLDTFVVCKS
Sbjct: 119 SEEEITFTDRCSHDMKKHFDESVLSKLPNNYQDILRQSIISEEDDMVPEPPLDTFVVCKS 178

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           KEYLEHIQLEDEEERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 179 KEYLEHIQLEDEEERASSRVEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229

[Close]

BLAST of IVF0018162 vs. ExPASy TrEMBL
Match: A0A6J1E9C0 (DNA replication complex GINS protein SLD5 OS=Cucurbita moschata OX=3662 GN=LOC111431969 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 163/171 (95.32%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           MEDTIEEYSRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYMLYILKSDELFRRL
Sbjct: 59  MEDTIEEYSRSGIDPLIVSLYQMDLDRTQFLLRSYIRIRLQKIEKYMLYILKSDELFRRL 118

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           S+EEITFTDRC HDMKKHFDESVLSKLPNNYQDIL+QSI SEEDDMVPEPPLDTFVVCKS
Sbjct: 119 SEEEITFTDRCSHDMKKHFDESVLSKLPNNYQDILRQSIISEEDDMVPEPPLDTFVVCKS 178

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           KEYLEHIQLEDEEERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 179 KEYLEHIQLEDEEERASSRVEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229

[Close]

BLAST of IVF0018162 vs. NCBI nr
Match: XP_008438015.1 (PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo] >XP_008438016.1 PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo] >XP_008438017.1 PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo])

HSP 1 Score: 331 bits (848), Expect = 3.03e-113
Identity = 169/171 (98.83%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           MED+IEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL
Sbjct: 59  MEDSIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 118

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQD+LKQSITSEEDDMVPEPPLDTFVVCKS
Sbjct: 119 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDVLKQSITSEEDDMVPEPPLDTFVVCKS 178

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 171
           KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 179 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of IVF0018162 vs. NCBI nr
Match: XP_016899073.1 (PREDICTED: DNA replication complex GINS protein SLD5 isoform X2 [Cucumis melo])

HSP 1 Score: 329 bits (843), Expect = 6.58e-113
Identity = 168/170 (98.82%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 2   EDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLS 61
           ED+IEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLS
Sbjct: 32  EDSIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLS 91

Query: 62  KEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSK 121
           KEEITFTDRCRHDMKKHFDESVLSKLPNNYQD+LKQSITSEEDDMVPEPPLDTFVVCKSK
Sbjct: 92  KEEITFTDRCRHDMKKHFDESVLSKLPNNYQDVLKQSITSEEDDMVPEPPLDTFVVCKSK 151

Query: 122 EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 171
           EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 152 EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 201

[Close]

BLAST of IVF0018162 vs. NCBI nr
Match: XP_004134322.2 (DNA replication complex GINS protein SLD5 isoform X1 [Cucumis sativus] >XP_011650740.1 DNA replication complex GINS protein SLD5 isoform X1 [Cucumis sativus] >KGN56501.1 hypothetical protein Csa_011248 [Cucumis sativus])

HSP 1 Score: 328 bits (842), Expect = 2.48e-112
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           MEDTIEEYSRSGIDPLIVSLYQMDLDR+QFLLRSYIRSRLQKIEKYMLYILKSDELF RL
Sbjct: 59  MEDTIEEYSRSGIDPLIVSLYQMDLDRVQFLLRSYIRSRLQKIEKYMLYILKSDELFGRL 118

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           S+EEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS
Sbjct: 119 SREEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 178

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 171
           KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 179 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of IVF0018162 vs. NCBI nr
Match: XP_031737760.1 (DNA replication complex GINS protein SLD5 isoform X2 [Cucumis sativus])

HSP 1 Score: 327 bits (837), Expect = 5.41e-112
Identity = 167/170 (98.24%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 2   EDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRLS 61
           EDTIEEYSRSGIDPLIVSLYQMDLDR+QFLLRSYIRSRLQKIEKYMLYILKSDELF RLS
Sbjct: 32  EDTIEEYSRSGIDPLIVSLYQMDLDRVQFLLRSYIRSRLQKIEKYMLYILKSDELFGRLS 91

Query: 62  KEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSK 121
           +EEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSK
Sbjct: 92  REEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSK 151

Query: 122 EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 171
           EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 152 EYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 201

[Close]

BLAST of IVF0018162 vs. NCBI nr
Match: XP_022924491.1 (DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924492.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924493.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924494.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924495.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022980813.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980814.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980816.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980817.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980818.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_023526386.1 DNA replication complex GINS protein SLD5 [Cucurbita pepo subsp. pepo] >XP_023526387.1 DNA replication complex GINS protein SLD5 [Cucurbita pepo subsp. pepo] >XP_023526388.1 DNA replication complex GINS protein SLD5 [Cucurbita pepo subsp. pepo] >KAG6582622.1 DNA replication complex GINS protein SLD5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019017.1 DNA replication complex GINS protein SLD5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (819), Expect = 7.93e-109
Identity = 163/171 (95.32%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           MEDTIEEYSRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYMLYILKSDELFRRL
Sbjct: 59  MEDTIEEYSRSGIDPLIVSLYQMDLDRTQFLLRSYIRIRLQKIEKYMLYILKSDELFRRL 118

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           S+EEITFTDRC HDMKKHFDESVLSKLPNNYQDIL+QSI SEEDDMVPEPPLDTFVVCKS
Sbjct: 119 SEEEITFTDRCSHDMKKHFDESVLSKLPNNYQDILRQSIISEEDDMVPEPPLDTFVVCKS 178

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 171
           KEYLEHIQLEDEEERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 179 KEYLEHIQLEDEEERASSRVEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229

[Close]

BLAST of IVF0018162 vs. TAIR 10
Match: AT5G49010.1 (DNA replication protein-related )

HSP 1 Score: 182.6 bits (462), Expect = 2.7e-46
Identity = 98/171 (57.31%), Postives = 126/171 (73.68%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           +E+TIE+Y  +GIDPL+VSLYQMDLDR QFLLRSY+R RL KIEK+M + L S+E  RRL
Sbjct: 56  VEETIEDYVENGIDPLVVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFHNLNSEEAERRL 115

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKS 120
           S++E  F  RC  D+ KHF+E+VL KLP NYQ +LKQS+ SE DDMVP+P LDTFVVC+S
Sbjct: 116 SEQEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDMVPQPHLDTFVVCRS 175

Query: 121 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 172
           K ++  + L +E E       E  EME   L+ IRY+ +K  +ESG+IDL+
Sbjct: 176 KNFVS-LNLYEEGES-----PETVEMERGDLYFIRYKIVKRAIESGQIDLI 220

[Close]

BLAST of IVF0018162 vs. TAIR 10
Match: AT5G49010.2 (DNA replication protein-related )

HSP 1 Score: 135.2 bits (339), Expect = 5.0e-32
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MEDTIEEYSRSGIDPLIVSLYQMDLDRIQFLLRSYIRSRLQKIEKYMLYILKSDELFRRL 60
           +E+TIE+Y  +GIDPL+VSLYQMDLDR QFLLRSY+R RL KIEK+M + L S+E  RRL
Sbjct: 56  VEETIEDYVENGIDPLVVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFHNLNSEEAERRL 115

Query: 61  SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDM 107
           S++E  F  RC  D+ KHF+E+VL KLP NYQ +LKQS+ SE DDM
Sbjct: 116 SEQEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDM 161

The following BLAST results are available for this feature:

BLAST of IVF0018162 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2VE40	1.2e-14	32.02	DNA replication complex GINS protein SLD5 OS=Bos taurus OX=9913 GN=GINS4 PE=2 SV...	[more]
Q99LZ3	1.6e-14	32.58	DNA replication complex GINS protein SLD5 OS=Mus musculus OX=10090 GN=Gins4 PE=1...	[more]
Q499W2	7.8e-14	32.02	DNA replication complex GINS protein SLD5 OS=Rattus norvegicus OX=10116 GN=Gins4...	[more]
Q9BRT9	1.9e-12	28.98	DNA replication complex GINS protein SLD5 OS=Homo sapiens OX=9606 GN=GINS4 PE=1 ...	[more]
Q7ZT48	2.5e-12	34.36	DNA replication complex GINS protein SLD5 OS=Xenopus laevis OX=8355 GN=gins4 PE=...	[more]

BLAST of IVF0018162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AVG5	9.4e-87	98.83	DNA replication complex GINS protein SLD5 OS=Cucumis melo OX=3656 GN=LOC10348325...	[more]
A0A1S4DSZ1	3.6e-86	98.82	DNA replication complex GINS protein SLD5 OS=Cucumis melo OX=3656 GN=LOC10348325...	[more]
A0A0A0L8W0	4.6e-86	98.25	DNA replication complex GINS protein SLD5 OS=Cucumis sativus OX=3659 GN=Csa_3G12...	[more]
A0A6J1J098	2.2e-83	95.32	DNA replication complex GINS protein SLD5 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E9C0	2.2e-83	95.32	DNA replication complex GINS protein SLD5 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of IVF0018162 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438015.1	3.03e-113	98.83	PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo] >...	[more]
XP_016899073.1	6.58e-113	98.82	PREDICTED: DNA replication complex GINS protein SLD5 isoform X2 [Cucumis melo]	[more]
XP_004134322.2	2.48e-112	98.25	DNA replication complex GINS protein SLD5 isoform X1 [Cucumis sativus] >XP_01165...	[more]
XP_031737760.1	5.41e-112	98.24	DNA replication complex GINS protein SLD5 isoform X2 [Cucumis sativus]	[more]
XP_022924491.1	7.93e-109	95.32	DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924492.1 D...	[more]

BLAST of IVF0018162 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49010.1	2.7e-46	57.31	DNA replication protein-related	[more]
AT5G49010.2	5.0e-32	64.15	DNA replication protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031633	DNA replication complex GINS protein SLD5, C-terminal	PFAM	PF16922	SLD5_C	coord: 110..171 e-value: 3.7E-14 score: 52.7
None	No IPR available	GENE3D	1.20.58.1030		coord: 1..161 e-value: 2.1E-48 score: 166.6
None	No IPR available	SUPERFAMILY	160059	PriA/YqbF domain	coord: 112..171
IPR008591	GINS complex subunit Sld5	PIRSF	PIRSF007764	GINS_Sld5	coord: 1..171 e-value: 8.9E-41 score: 138.0
IPR008591	GINS complex subunit Sld5	PANTHER	PTHR21206	SLD5 PROTEIN	coord: 1..171
IPR021151	GINS subunit, domain A	PFAM	PF05916	Sld5	coord: 18..65 e-value: 1.8E-5 score: 25.1
IPR038749	GINS complex protein Sld5, alpha-helical domain	CDD	cd11711	GINS_A_Sld5	coord: 1..84 e-value: 8.49042E-26 score: 93.4438
IPR036224	GINS, helical bundle-like domain superfamily	SUPERFAMILY	158573	GINS helical bundle-like	coord: 4..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018162.3	IVF0018162.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000727	double-strand break repair via break-induced replication
cellular_component	GO:0000811	GINS complex