IVF0018129 (gene) Melon (IVF77) v1

Overview


Name	IVF0018129
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr08: 17419248 .. 17419487 (+)
RNA-Seq Expression	IVF0018129
Synteny	IVF0018129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAGTTGGAAGGTACGGAGAAAGAGGTTCTGGGTCTGAAAGAAATGATGCTCGAGTTGAAGAAGGTAGTGGATCGAATGGTTGACGACATGAGAGAAAATAGTTCATACCAGAGGAGAGATGAATCAGGAAAAGGTTTAGTGGCTGTCTTATCTCAAAACAGGCACCTTATTGCTTTCTTCAGCCAGAAGTTGTCTACTCGTGCTCAAATCTTAAATACAAAGAAAATGTGA

mRNA sequence

ATGGAAGAACAGTTGGAAGGTACGGAGAAAGAGGTTCTGGGTCTGAAAGAAATGATGCTCGAGTTGAAGAAGGTAGTGGATCGAATGGTTGACGACATGAGAGAAAATAGTTCATACCAGAGGAGAGATGAATCAGGAAAAGGTTTAGTGGCTGTCTTATCTCAAAACAGGCACCTTATTGCTTTCTTCAGCCAGAAGTTGTCTACTCGTGCTCAAATCTTAAATACAAAGAAAATGTGA

Coding sequence (CDS)

ATGGAAGAACAGTTGGAAGGTACGGAGAAAGAGGTTCTGGGTCTGAAAGAAATGATGCTCGAGTTGAAGAAGGTAGTGGATCGAATGGTTGACGACATGAGAGAAAATAGTTCATACCAGAGGAGAGATGAATCAGGAAAAGGTTTAGTGGCTGTCTTATCTCAAAACAGGCACCTTATTGCTTTCTTCAGCCAGAAGTTGTCTACTCGTGCTCAAATCTTAAATACAAAGAAAATGTGA

Protein sequence

MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESGKGLVAVLSQNRHLIAFFSQKLSTRAQILNTKKM

Homology

[Close]

BLAST of IVF0018129 vs. ExPASy TrEMBL
Match: A0A5A7V1Q7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001610 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-10
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 5  LEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESG 47
          L GTEKEVLGLKEMMLELKKVVD+M DD+RENSSY+RRDESG
Sbjct: 6  LGGTEKEVLGLKEMMLELKKVVDQMADDIRENSSYRRRDESG 47

[Close]

BLAST of IVF0018129 vs. ExPASy TrEMBL
Match: A0A5A7TZQ5 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001280 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDES 46
          MEE++EG EKE+LGLKE MLELKK +DRM D+MREN+SY+RR+ES
Sbjct: 6  MEERVEGMEKEILGLKETMLELKKTMDRMADEMRENTSYKRREES 50

[Close]

BLAST of IVF0018129 vs. ExPASy TrEMBL
Match: A0A5D3DXK6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003260 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESG 47
          MEE+LEGTEKEVL LKEMMLE+KK +DR+ D++REN SY++++ESG
Sbjct: 6  MEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESG 51

[Close]

BLAST of IVF0018129 vs. ExPASy TrEMBL
Match: A0A5A7TII1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001860 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESG 47
          MEE+LEGTEKEVL LKEMMLE+KK +DR+ D++REN SY++++ESG
Sbjct: 6  MEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESG 51

[Close]

BLAST of IVF0018129 vs. ExPASy TrEMBL
Match: A0A5D3CXP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00230 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESG 47
          MEE+LEGTEKEVL LKEMMLE+KK +DR+ D++REN SY++++ESG
Sbjct: 6  MEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESG 51

[Close]

BLAST of IVF0018129 vs. NCBI nr
Match: KAA0062073.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04947.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.01e-14
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 5  LEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESG 46
          L GTEKEVLGLKEMMLELKKVVD+M DD+RENSSY+RRDESG
Sbjct: 6  LGGTEKEVLGLKEMMLELKKVVDQMADDIRENSSYRRRDESG 47

[Close]

BLAST of IVF0018129 vs. NCBI nr
Match: KAA0060561.1 (uncharacterized protein E6C27_scaffold22G004280 [Cucumis melo var. makuwa] >TYK02308.1 uncharacterized protein E5676_scaffold18G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 6.32e-12
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 5  LEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESG 46
          LEG EKEVLGLKEMMLE KK VDRM  D+RENSSY+RRD+SG
Sbjct: 32 LEGIEKEVLGLKEMMLEQKKAVDRMAGDIRENSSYRRRDKSG 73

[Close]

BLAST of IVF0018129 vs. NCBI nr
Match: KAA0040482.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 7.19e-12
Identity = 29/46 (63.04%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESG 46
          MEE+++GTEKE++GLKEMMLE+KK V+R+ D+M+E+ SY++R+ESG
Sbjct: 1  MEERVDGTEKEIMGLKEMMLEMKKAVERLTDEMKESQSYKKREESG 46

[Close]

BLAST of IVF0018129 vs. NCBI nr
Match: KAA0067579.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97178.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.16e-11
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDESGKGLVAVLSQNRHLI 60
           +EE++EGTEKEV+GLKEMMLE+KK +D++ ++MREN +Y++R+ESG    +V+   R + 
Sbjct: 154 LEERMEGTEKEVMGLKEMMLEMKKSMDQLAEEMRENHNYRKREESGTSDDSVMKLKRKME 213

Query: 61  AFFSQKLSTRAQILNTK 77
            F      T+  +  +K
Sbjct: 214 EFDDTNEGTQGTVDRSK 230

[Close]

BLAST of IVF0018129 vs. NCBI nr
Match: KAA0048514.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK28305.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 3.38e-11
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MEEQLEGTEKEVLGLKEMMLELKKVVDRMVDDMRENSSYQRRDES 45
          MEE++EG EKE+LGLKE MLELKK +DRM D+MREN+SY+RR+ES
Sbjct: 6  MEERVEGMEKEILGLKETMLELKKTMDRMADEMRENTSYKRREES 50

The following BLAST results are available for this feature:

BLAST of IVF0018129 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1Q7	9.5e-10	88.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZQ5	2.3e-08	73.33	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001280...	[more]
A0A5D3DXK6	3.1e-08	69.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TII1	3.1e-08	69.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXP0	3.1e-08	69.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0018129 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062073.1	4.01e-14	88.10	retrotransposon protein [Cucumis melo var. makuwa] >TYK04947.1 retrotransposon p...	[more]
KAA0060561.1	6.32e-12	80.95	uncharacterized protein E6C27_scaffold22G004280 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0040482.1	7.19e-12	63.04	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067579.1	3.16e-11	44.16	retrotransposon protein [Cucumis melo var. makuwa] >TYJ97178.1 retrotransposon p...	[more]
KAA0048514.1	3.38e-11	73.33	peroxidase 64 [Cucumis melo var. makuwa] >TYK28305.1 peroxidase 64 [Cucumis melo...	[more]

BLAST of IVF0018129 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018129.1	IVF0018129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003723	RNA binding