IVF0018123 (gene) Melon (IVF77) v1

Overview


Name	IVF0018123
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr02: 13722020 .. 13723237 (-)
RNA-Seq Expression	IVF0018123
Synteny	IVF0018123

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTCTATCATGACGCCCTATTGATTCCTCGACGCCTGAGGTTTATTCGTGATAGACGATGCAACTCTATCATGATGCACTGCTGCTTCCTCGACGCCTGGGGTTTGTTCGTGATACACGATGCAACTCTATCACGACACCCTACTCAATCCTCGACGCTTAGGGTTTGTTCGTGATAGACGATGCAACTCTATCATGACACCCTGCTGCTTCCTCGACGCCTGGGGTTTGCATGTGATAGACGATGCAACTCTATCATGACGTCCTACTGATTCCTCGACGTTTGGGGTTTGTTCGTGATAGACGATGCAACTCTATCATGACGCCCTACTGCTTCCTCGATGCCTGGGGTTTGTTCGTGATAAACGATGCAACTCTATCATGACGTCCTACTGATTCCTCGACGTCTGGGGTTTGTTCGTGATAGACGATGCAACTCTATCATGACGCCCTGTTGCTTCTTCGACGCATGGGATTTGTTCATGATAGACGATGCAACTCTATCATGACGCCCAACTGATTTATCAACTTCTAGGGTTTGTTCATGATAGACGATGCAACTCTATCATGACGCCCTGGTGCTTCCTTGACGCCTGGGGTTTGTTCGTGATAGACAATGCAACTCTATCATGACGCCCTACTGATTTGTCAACTTTTTTTTCATATACTCTTTGTTCCAAGACAATGTCATCGACACTAACTTGCTTGTGATGATTTACTTTTACAGAACGATGGTTTACTTCACGGAACGATTCTTGTCTGGAGTCCGACATCTCGTAATACTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGGCGCTTTTGCAGATCATTGGCCACGCTTAGACAACAACTCAGTTCTTCTTAGATTATCCGTGGAGGTACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTGGCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTATAACCAAGGTCCCTGGAGAGTTTTTCTTTACTGACTGTTATTGGGAGTGGTTGGATCTTGTAGTTGGTCGAAATACACGACTTCTTTACAGTACTCGTTTATATGGCGCCGTAACAGCTTCTTTGTACACTTATGATCGCAACAGTGATGTTGTTAGAGCATTTTGTGAAGCATGA

mRNA sequence

ATGCAACTCTATCATGACGCCCTATTGATTCCTCGACGCCTGAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGGCGCTTTTGCAGATCATTGGCCACGCTTAGACAACAACTCAGTTCTTCTTAGATTATCCGTGGAGGTACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTGGCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTATAACCAAGGTCCCTGGAGAGTTTTTCTTTACTGACTGTTATTGGGAGTGGTTGGATCTTGTAGTTGGTCGAAATACACGACTTCTTTACAGTACTCGTTTATATGGCGCCGTAACAGCTTCTTTGTACACTTATGATCGCAACAGTGATGTTGTTAGAGCATTTTGTGAAGCATGA

Coding sequence (CDS)

ATGCAACTCTATCATGACGCCCTATTGATTCCTCGACGCCTGAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGGCGCTTTTGCAGATCATTGGCCACGCTTAGACAACAACTCAGTTCTTCTTAGATTATCCGTGGAGGTACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTGGCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTATAACCAAGGTCCCTGGAGAGTTTTTCTTTACTGACTGTTATTGGGAGTGGTTGGATCTTGTAGTTGGTCGAAATACACGACTTCTTTACAGTACTCGTTTATATGGCGCCGTAACAGCTTCTTTGTACACTTATGATCGCAACAGTGATGTTGTTAGAGCATTTTGTGAAGCATGA

Protein sequence

MQLYHDALLIPRRLRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

Homology

[Close]

BLAST of IVF0018123 vs. ExPASy TrEMBL
Match: A0A5A7UV18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003110 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.1e-77
Identity = 144/181 (79.56%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 1   MQLYHDALLIPRRL---------------------------RNQPREDGLSLIVEKPWAG 60
           MQLYHDALL+PRRL                           +NQPREDGLSLIVEKPWA 
Sbjct: 1   MQLYHDALLLPRRLGFVRDRTMVYFTERFLSGVRHLIILYNKNQPREDGLSLIVEKPWAA 60

Query: 61  AFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTR 120
           AFADHWPRLDNNSVL RLSVE+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTR
Sbjct: 61  AFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTR 120

Query: 121 WGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCE 155
           WGT+TKVPGEF+FTDCYWEWL+LVVGRNTRLLYSTRLYG VTASLYTYDRNSDVVR FCE
Sbjct: 121 WGTMTKVPGEFYFTDCYWEWLELVVGRNTRLLYSTRLYGTVTASLYTYDRNSDVVRTFCE 180

[Close]

BLAST of IVF0018123 vs. ExPASy TrEMBL
Match: A0A5A7TFC8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00910 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 145/176 (82.39%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MQLYHDALLIPRRL----------------------RNQPREDGLSLIVEKPWAGAFADH 60
           MQLYHDALL+PRRL                      RNQPREDGLSLIVEK WAGAFADH
Sbjct: 1   MQLYHDALLLPRRLGTMVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADH 60

Query: 61  WPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTIT 120
           WPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGT+T
Sbjct: 61  WPRLDNNSVLPRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVT 120

Query: 121 KVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA 155
           KVPGEF FTDCYWEWL+LVVGRNTRLLYST LY  VTASLYTYDRNSDVVRAFCEA
Sbjct: 121 KVPGEFCFTDCYWEWLELVVGRNTRLLYSTHLYSVVTASLYTYDRNSDVVRAFCEA 176

[Close]

BLAST of IVF0018123 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.7e-75
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 15  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEA 74
           RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEA
Sbjct: 21  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVEVPLSEGKSAWVLQSSIHNEA 80

Query: 75  PNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAV 134
           PNSGRALTLGQRLIEGQTRWGT+TKVPGEF FTDCYWEWL+LVVGRNTRLLYSTRLYGAV
Sbjct: 81  PNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWLELVVGRNTRLLYSTRLYGAV 140

Query: 135 TASLYTYDRNSDVVRAFCEA 155
           TASLYTYDRNSDVVRAFCEA
Sbjct: 141 TASLYTYDRNSDVVRAFCEA 160

[Close]

BLAST of IVF0018123 vs. ExPASy TrEMBL
Match: A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 145/191 (75.92%), Postives = 146/191 (76.44%), Query Frame = 0


Query: 1   MQLYHDALLIPRRL--------------------------------------------RN 60
           MQLYHD LLIPRRL                                            RN
Sbjct: 58  MQLYHDVLLIPRRLGFVRDRRCNSIMTPYCFLDAWGLTMVYFTERFLSGVRHLVILSDRN 117

Query: 61  QPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPN 120
           QPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPN
Sbjct: 118 QPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPN 177

Query: 121 SGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTA 148
           SGRALTLGQRLIEGQTRWGT+TKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTA
Sbjct: 178 SGRALTLGQRLIEGQTRWGTMTKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTA 237

[Close]

BLAST of IVF0018123 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 132/140 (94.29%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 15  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEA 74
           RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVL RLSVE+PLSEGKSAW+LQSSIH+EA
Sbjct: 21  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWILQSSIHHEA 80

Query: 75  PNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAV 134
           PNSGRALTLGQRLIEGQTRWGT+TKVP EF FTDCYWEWL+LVVGRNTRLLYSTRLYGAV
Sbjct: 81  PNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWLELVVGRNTRLLYSTRLYGAV 140

Query: 135 TASLYTYDRNSDVVRAFCEA 155
           TASLYTYDRNSDVVRAFCEA
Sbjct: 141 TASLYTYDRNSDVVRAFCEA 160

[Close]

BLAST of IVF0018123 vs. NCBI nr
Match: KAA0058006.1 (uncharacterized protein E6C27_scaffold274G003110 [Cucumis melo var. makuwa])

HSP 1 Score: 294 bits (752), Expect = 9.72e-96
Identity = 144/181 (79.56%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 1   MQLYHDALLIPRRL---------------------------RNQPREDGLSLIVEKPWAG 60
           MQLYHDALL+PRRL                           +NQPREDGLSLIVEKPWA 
Sbjct: 1   MQLYHDALLLPRRLGFVRDRTMVYFTERFLSGVRHLIILYNKNQPREDGLSLIVEKPWAA 60

Query: 61  AFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTR 120
           AFADHWPRLDNNSVL RLSVE+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTR
Sbjct: 61  AFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTR 120

Query: 121 WGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCE 154
           WGT+TKVPGEF+FTDCYWEWL+LVVGRNTRLLYSTRLYG VTASLYTYDRNSDVVR FCE
Sbjct: 121 WGTMTKVPGEFYFTDCYWEWLELVVGRNTRLLYSTRLYGTVTASLYTYDRNSDVVRTFCE 180

[Close]

BLAST of IVF0018123 vs. NCBI nr
Match: KAA0047222.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (703), Expect = 1.07e-91
Identity = 139/190 (73.16%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 1   MQLYHDALLIPRRL------------------------------------RNQPREDGLS 60
           MQLYHDALL+PRRL                                    RNQP+EDGLS
Sbjct: 1   MQLYHDALLLPRRLGFVRDRRCNSIMTPYCFLNIWERFLSGVRHLVILSDRNQPKEDGLS 60

Query: 61  LIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLG 120
           LIVEKPWA AFADHWPRLDNNSVL RLSVE+PLSEGKSA VLQSSIHNEA NS RALTLG
Sbjct: 61  LIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSEGKSARVLQSSIHNEALNSVRALTLG 120

Query: 121 QRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRN 154
           QRLIEGQTRWGT+TK+PGEF F DCYWEWL+LVVGRNTRLLYSTRLYGA+T SLYTYDRN
Sbjct: 121 QRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVGRNTRLLYSTRLYGAITTSLYTYDRN 180

[Close]

BLAST of IVF0018123 vs. NCBI nr
Match: KAA0041618.1 (hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 292 bits (747), Expect = 1.22e-90
Identity = 145/176 (82.39%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MQLYHDALLIPRRL----------------------RNQPREDGLSLIVEKPWAGAFADH 60
           MQLYHDALL+PRRL                      RNQPREDGLSLIVEK WAGAFADH
Sbjct: 1   MQLYHDALLLPRRLGTMVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADH 60

Query: 61  WPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTIT 120
           WPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGT+T
Sbjct: 61  WPRLDNNSVLPRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVT 120

Query: 121 KVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA 154
           KVPGEF FTDCYWEWL+LVVGRNTRLLYST LY  VTASLYTYDRNSDVVRAFCEA
Sbjct: 121 KVPGEFCFTDCYWEWLELVVGRNTRLLYSTHLYSVVTASLYTYDRNSDVVRAFCEA 176

[Close]

BLAST of IVF0018123 vs. NCBI nr
Match: KAA0061098.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03768.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (694), Expect = 3.63e-90
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 15  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEA 74
           RNQ REDGLSLIVEKPWAG FADHWPRLDNNSVL RLSVE+PLSEGKSAWVLQS IH+EA
Sbjct: 21  RNQSREDGLSLIVEKPWAGTFADHWPRLDNNSVLSRLSVEIPLSEGKSAWVLQSFIHDEA 80

Query: 75  PNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAV 134
           PNSGRALT GQRLIEGQT WGT+TKVPGEF FTDCYWEWL+LVVGRNTRLLYST LYGAV
Sbjct: 81  PNSGRALTFGQRLIEGQTHWGTVTKVPGEFCFTDCYWEWLELVVGRNTRLLYSTHLYGAV 140

Query: 135 TASLYTYDRNSDVVRAFCEA 154
           TASLYTYDRN+DVVRAFCEA
Sbjct: 141 TASLYTYDRNNDVVRAFCEA 160

[Close]

BLAST of IVF0018123 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (734), Expect = 1.26e-88
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 15  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEA 74
           RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEA
Sbjct: 21  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVEVPLSEGKSAWVLQSSIHNEA 80

Query: 75  PNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAV 134
           PNSGRALTLGQRLIEGQTRWGT+TKVPGEF FTDCYWEWL+LVVGRNTRLLYSTRLYGAV
Sbjct: 81  PNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWLELVVGRNTRLLYSTRLYGAV 140

Query: 135 TASLYTYDRNSDVVRAFCEA 154
           TASLYTYDRNSDVVRAFCEA
Sbjct: 141 TASLYTYDRNSDVVRAFCEA 160

The following BLAST results are available for this feature:

BLAST of IVF0018123 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV18	6.1e-77	79.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TFC8	2.3e-76	82.39	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TX42	5.7e-75	97.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C3D7	2.8e-74	75.92	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VHW8	3.1e-73	94.29	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0018123 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058006.1	9.72e-96	79.56	uncharacterized protein E6C27_scaffold274G003110 [Cucumis melo var. makuwa]	[more]
KAA0047222.1	1.07e-91	73.16	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0041618.1	1.22e-90	82.39	hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa]	[more]
KAA0061098.1	3.63e-90	90.71	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03768.1 putative m...	[more]
KAA0047478.1	1.26e-88	97.14	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018123 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 24..154
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 24..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018123.1	IVF0018123.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane