IVF0018106 (gene) Melon (IVF77) v1

Overview


Name	IVF0018106
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr01: 29304601 .. 29305017 (+)
RNA-Seq Expression	IVF0018106
Synteny	IVF0018106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGGAACGGATTTGGGAGAAGCAGAGGGGGGAGAGTAATAATAGTAAGGAAAATACGGTAAAATTGGATTCGGTGGCGGCGGAGCAATGCCTGGAAATTGGCCGCCGTCGGACGGAGGGTACGGCTGGACAGAGGACGGCGGCGGCGGAGAAGGGTAGACGCATGCGTCGCAGGAGGGAGGCGAGGGAGGAGGAGGGCATTGAGAAGTAGGGAGTGGCGGTGGGGGAGATGGAGGCGGAGGCGGAGAGGGCGGGGGAGGGCATTCCACGACCGGCGGAGGAGGCGGCGGCGGCGGGAGTTGACATGGGTTGTCACAAGCTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGAGGCGGAAGAAAGGAGGGAAAATTTGGGGAGCGAGAAGAGGAAGAAAGTGA

mRNA sequence

ATGAAAATGGAACGGATTTGGGAGAAGCAGAGGGGGGAGAGTAATAATAGTAAGGAAAATACGGTAAAATTGGATTCGGTGGCGGCGGAGCAATGCCTGGAAATTGGCCGCCGTCGGACGGAGGGTACGGCTGGACAGAGGACGGCGGCGGCGGAGAAGGGTAGACGCATGCGTCGCAGGAGGGAGGCGAGGGAGGAGGAGGGCATTGAGAAGGCGGGGGAGGGCATTCCACGACCGGCGGAGGAGGCGGCGGCGGCGGGAGTTGACATGGGTTGTCACAAGCTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGAGGCGGAAGAAAGGAGGGAAAATTTGGGGAGCGAGAAGAGGAAGAAAGTGA

Coding sequence (CDS)

ATGAAAATGGAACGGATTTGGGAGAAGCAGAGGGGGGAGAGTAATAATAGTAAGGAAAATACGGTAAAATTGGATTCGGTGGCGGCGGAGCAATGCCTGGAAATTGGCCGCCGTCGGACGGAGGGTACGGCTGGACAGAGGACGGCGGCGGCGGAGAAGGGTAGACGCATGCGTCGCAGGAGGGAGGCGAGGGAGGAGGAGGGCATTGAGAAGGCGGGGGAGGGCATTCCACGACCGGCGGAGGAGGCGGCGGCGGCGGGAGTTGACATGGGTTGTCACAAGCTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGAGGCGGAAGAAAGGAGGGAAAATTTGGGGAGCGAGAAGAGGAAGAAAGTGA

Protein sequence

MKMERIWEKQRGESNNSKENTVKLDSVAAEQCLEIGRRRTEGTAGQRTAAAEKGRRMRRRREAREEEGIEKAGEGIPRPAEEAAAAGVDMGCHKLSTWNSRPDPWPRRRRKKGGKIWGARRGRK

Homology

[Close]

BLAST of IVF0018106 vs. ExPASy TrEMBL
Match: A0A0A0KB51 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.6e-38
Identity = 101/164 (61.59%), Postives = 104/164 (63.41%), Query Frame = 0


Query: 1   MKMERIWEKQRGESNNSKENTVKLDSVAAEQCLEIGRRRTEGTAGQRTAAAEKGRRMRRR 60
           MKMERIWEKQRGESNNSKENTVKL S  AEQCLEIG RRTEGTAGQR AA  KGRRM R 
Sbjct: 1   MKMERIWEKQRGESNNSKENTVKLGSAEAEQCLEIGHRRTEGTAGQRMAAEGKGRRMHRT 60

Query: 61  REAREEEGIEK--------------AGEGIPRPA-------------------------- 118
           REAR EEGIEK              AGEGI +PA                          
Sbjct: 61  REARVEEGIEKWGVAVGEMEAEGTGAGEGIRQPAAAAGARVEEGIEKWGVAVGEMEAEGT 120

[Close]

BLAST of IVF0018106 vs. NCBI nr
Match: KAE8646359.1 (hypothetical protein Csa_023833, partial [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 8.05e-18
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 72  AGEGIPRPAEEAAAAGVDMGCHKLSTWNSRPDPWPRRRRKKGGKIW 117
           AGEGI +PA   AAAGVDMGCHKLSTWNSRPDPWPRR RKKGG+IW
Sbjct: 64  AGEGIRQPA---AAAGVDMGCHKLSTWNSRPDPWPRRWRKKGGRIW 106

The following BLAST results are available for this feature:

BLAST of IVF0018106 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB51	2.6e-38	61.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1	[more]

BLAST of IVF0018106 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646359.1	8.05e-18	84.78	hypothetical protein Csa_023833, partial [Cucumis sativus]	[more]

BLAST of IVF0018106 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018106.1	IVF0018106.1	mRNA