IVF0018105 (gene) Melon (IVF77) v1

Overview


Name	IVF0018105
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr04: 21869692 .. 21870057 (-)
RNA-Seq Expression	IVF0018105
Synteny	IVF0018105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCCTCATACGTTTTCTCAAGGTATAGGTTGGGAAGCGAGCTCCTTGAAGGGAGAACTGATGTGCGACCCAAAACGATCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACACTCGTCCGGTTTCAAAAATCATTGGAAATGCACTTACAGCAAAGGAAATGGGCTGAGCTCGAGTACTTCTAGTGTTCGTCCCCAGAAAACGCGAGCGAGAATGGCCCCGACTCGGTTTTCTCGTCCATTGGGCAAATACCGATCCTCCTACGATTTTTTCCCTTTGCTGCGTATAGGTCATAAGTCTTTTGATCTTCAGGGCTCGTACTCCGAGGACTTCAACCTACACTCCTGGCATGCTCTATGA

mRNA sequence

ATGCTCCCTCATACGTTTTCTCAAGGTATAGGTTGGGAAGCGAGCTCCTTGAAGGGAGAACTGATGTGCGACCCAAAACGATCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACACTCGTCCGGTTTCAAAAATCATTGGAAATGCACTTACAGCAAAGGAAATGGGCTGAGCTCGAGTACTTCTAGTGTTCGTCCCCAGAAAACGCGAGCGAGAATGGCCCCGACTCGGTTTTCTCGTCCATTGGGCAAATACCGATCCTCCTACGATTTTTTCCCTTTGCTGCGTATAGGTCATAAGTCTTTTGATCTTCAGGGCTCGTACTCCGAGGACTTCAACCTACACTCCTGGCATGCTCTATGA

Coding sequence (CDS)

ATGCTCCCTCATACGTTTTCTCAAGGTATAGGTTGGGAAGCGAGCTCCTTGAAGGGAGAACTGATGTGCGACCCAAAACGATCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACACTCGTCCGGTTTCAAAAATCATTGGAAATGCACTTACAGCAAAGGAAATGGGCTGAGCTCGAGTACTTCTAGTGTTCGTCCCCAGAAAACGCGAGCGAGAATGGCCCCGACTCGGTTTTCTCGTCCATTGGGCAAATACCGATCCTCCTACGATTTTTTCCCTTTGCTGCGTATAGGTCATAAGTCTTTTGATCTTCAGGGCTCGTACTCCGAGGACTTCAACCTACACTCCTGGCATGCTCTATGA

Protein sequence

MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSSSTSSVRPQKTRARMAPTRFSRPLGKYRSSYDFFPLLRIGHKSFDLQGSYSEDFNLHSWHAL

Homology

[Close]

BLAST of IVF0018105 vs. ExPASy TrEMBL
Match: A0A5A7SLK2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29721G00010 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
          MLP  FS GIG EA+SL+GEL CDPKRSKRWPMLPTSGE SSGF+NHWKCT S+GNGLSS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 61 STSSVRPQKTRARMAPTRFSRP 83
           TS  RP+KTRA M  T+FSRP
Sbjct: 61 RTSGARPKKTRAGMPRTQFSRP 82

[Close]

BLAST of IVF0018105 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.8e-26
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLP TFS GIG EASSL+GEL CDPKRSKRWP LPTSGE SSG +NHWKCT S+GNGLSS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLSS 238

Query: 61  STSSVRPQKTRARMAPTRFSRP 83
            TS  RP+KT A M  T+FSRP
Sbjct: 239 RTSGARPKKTPAGMPRTQFSRP 260

[Close]

BLAST of IVF0018105 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.0e-24
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLP TFSQGIG +ASSL+GE  CDPK+SK WPMLPT  + SSG KNHWKCT  + N LSS
Sbjct: 89  MLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCTCREENRLSS 148

Query: 61  STSSVRPQKTRARMAPTRFSRPL 84
            TSSVRP+KTRARM  T+FSRP+
Sbjct: 149 RTSSVRPKKTRARMPRTQFSRPV 171

[Close]

BLAST of IVF0018105 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLP TFS GIG EASSL+GEL+CDPK SKRWPMLPT GE SSGF+NHWKCT S+GNGLSS
Sbjct: 397 MLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSS 456

Query: 61  STSSVRPQKT 71
            TS  RP+KT
Sbjct: 457 RTSGARPEKT 466

[Close]

BLAST of IVF0018105 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.0e-23
Identity = 59/85 (69.41%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLPH F+QGIG EASSL+GEL  DPKR KRWPML TSGE  SG +NHWKCT S  N LSS
Sbjct: 46  MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSS 105

Query: 61  STSSVRPQKTRARMAPTRFSRPLGK 86
            TS V P KTR RM+ T+FSRP  K
Sbjct: 106 RTSGVCPMKTRPRMSRTQFSRPRAK 130

[Close]

BLAST of IVF0018105 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 3.68e-35
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
          MLP  FS GIG EA+SL+GEL CDPKRSKRWPMLPTSGE SSGF+NHWKCT S+GNGLSS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 61 STSSVRPQKTRARMAPTRFSRP 82
           TS  RP+KTRA M  T+FSRP
Sbjct: 61 RTSGARPKKTRAGMPRTQFSRP 82

[Close]

BLAST of IVF0018105 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.09e-32
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLP TFS GIG EASSL+GEL CDPKRSKRWP LPTSGE SSG +NHWKCT S+GNGLSS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLSS 238

Query: 61  STSSVRPQKTRARMAPTRFSRP 82
            TS  RP+KT A M  T+FSRP
Sbjct: 239 RTSGARPKKTPAGMPRTQFSRP 260

[Close]

BLAST of IVF0018105 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (291), Expect = 2.02e-29
Identity = 59/85 (69.41%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLPH F+QGIG EASSL+GEL  DPKR KRWPML TSGE  SG +NHWKCT S  N LSS
Sbjct: 46  MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSS 105

Query: 61  STSSVRPQKTRARMAPTRFSRPLGK 85
            TS V P KTR RM+ T+FSRP  K
Sbjct: 106 RTSGVCPMKTRPRMSRTQFSRPRAK 130

[Close]

BLAST of IVF0018105 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 2.55e-29
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLP TFSQGIG +ASSL+GE  CDPK+SK WPMLPT  + SSG KNHWKCT  + N LSS
Sbjct: 89  MLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCTCREENRLSS 148

Query: 61  STSSVRPQKTRARMAPTRFSRPL 83
            TSSVRP+KTRARM  T+FSRP+
Sbjct: 149 RTSSVRPKKTRARMPRTQFSRPV 171

[Close]

BLAST of IVF0018105 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 2.80e-28
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MLPHTFSQGIGWEASSLKGELMCDPKRSKRWPMLPTSGEHSSGFKNHWKCTYSKGNGLSS 60
           MLP TFS GIG EASSL+GEL+CDPK SKRWPMLPT GE SSGF+NHWKCT S+GNGLSS
Sbjct: 397 MLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSS 456

Query: 61  STSSVRPQKT 70
            TS  RP+KT
Sbjct: 457 RTSGARPEKT 466

The following BLAST results are available for this feature:

BLAST of IVF0018105 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLK2	2.0e-27	76.83	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7VGB1	3.8e-26	75.61	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]
A0A5D3E5W4	8.0e-24	71.08	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DFP2	1.0e-23	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V368	3.0e-23	69.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0018105 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026022.1	3.68e-35	76.83	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0066117.1	1.09e-32	75.61	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]
KAA0061317.1	2.02e-29	69.41	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0035524.1	2.55e-29	71.08	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
TYK22521.1	2.80e-28	78.57	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018105 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018105.1	IVF0018105.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity