IVF0018104 (gene) Melon (IVF77) v1

Overview
NameIVF0018104
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 1354909 .. 1355134 (-)
RNA-Seq ExpressionIVF0018104
SyntenyIVF0018104
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGAAATGGAAAAAAGGTTCCTTCGAGCTTGGTAGGAAAGCAGTGAAGGAACTTCGAAGAAAAAGCTATGGCGGTGAAAAAACAAGAGAGATGAGTCTCTTCAGCCCTAAACTAGGCCGTGGGCTGTAGAAATGGTATACCAAGTTCCCCTTGACCTGTTGACGGCGTTTGTGGAAATGCGGCAAATGCCCTATCAACTTAACTGCTGGACGGCGTTTTGA

mRNA sequence

ATGGCTAGAAATGGAAAAAAGGTTCCTTCGAGCTTGGTAGGAAAGCAGCCGTGGGCTGTAGAAATGGTATACCAAGTTCCCCTTGACCTGTTGACGGCGTTTGTGGAAATGCGGCAAATGCCCTATCAACTTAACTGCTGGACGGCGTTTTGA

Coding sequence (CDS)

ATGGCTAGAAATGGAAAAAAGGTTCCTTCGAGCTTGGTAGGAAAGCAGCCGTGGGCTGTAGAAATGGTATACCAAGTTCCCCTTGACCTGTTGACGGCGTTTGTGGAAATGCGGCAAATGCCCTATCAACTTAACTGCTGGACGGCGTTTTGA

Protein sequence

MARNGKKVPSSLVGKQPWAVEMVYQVPLDLLTAFVEMRQMPYQLNCWTAF
Homology
[Close]
BLAST of IVF0018104 vs. ExPASy TrEMBL
Match: A0A0A0LV28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G527960 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.6e-08
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 5  GKKVPSSLVGK---QPWAVEMVYQVPLDLLTAFVEMRQMPYQLNCWTAF 51
          G+K    L  K   +PWAVEM YQ PLDLLTAFVEMRQMP+QLN WT F
Sbjct: 13 GRKAVKELRRKKLWRPWAVEMGYQAPLDLLTAFVEMRQMPWQLNGWTVF 61

[Close]
BLAST of IVF0018104 vs. NCBI nr
Match: KGN65780.1 (hypothetical protein Csa_023285 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 5.12e-13
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 1  MARNGKKVPSSLVGK-----------QPWAVEMVYQVPLDLLTAFVEMRQMPYQLNCWTA 50
          MA NG+K    L  K           +PWAVEM YQ PLDLLTAFVEMRQMP+QLN WT 
Sbjct: 1  MATNGRKGSFELGRKAVKELRRKKLWRPWAVEMGYQAPLDLLTAFVEMRQMPWQLNGWTV 60

The following BLAST results are available for this feature:
BLAST of IVF0018104 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018104 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV285.6e-0867.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G527960 PE=4 SV=1[more]
BLAST of IVF0018104 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65780.15.12e-1359.02hypothetical protein Csa_023285 [Cucumis sativus][more]
BLAST of IVF0018104 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018104.1IVF0018104.1mRNA