IVF0018074 (gene) Melon (IVF77) v1

Overview


Name	IVF0018074
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr09: 16835196 .. 16835438 (+)
RNA-Seq Expression	IVF0018074
Synteny	IVF0018074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAGGGAAAGGAAATGGAAGCAAATGTTACTACCACAGAGAAAAAATTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACTTGTAGAAAAGAAGAGAAAGGGGAATACTCCTAAGAAAAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCGCTGCAACGAGGATGAACATTGGTTGAGAAATTGCCCAAAGTACCTTGCTGAGAAGGAAGCACAAGGAAACTAG

mRNA sequence

ATGAGTAAGGGAAAGGAAATGGAAGCAAATGTTACTACCACAGAGAAAAAATTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACTTGTAGAAAAGAAGAGAAAGGGGAATACTCCTAAGAAAAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCGCTGCAACGAGGATGAACATTGGTTGAGAAATTGCCCAAAGTACCTTGCTGAGAAGGAAGCACAAGGAAACTAG

Coding sequence (CDS)

ATGAGTAAGGGAAAGGAAATGGAAGCAAATGTTACTACCACAGAGAAAAAATTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACTTGTAGAAAAGAAGAGAAAGGGGAATACTCCTAAGAAAAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCGCTGCAACGAGGATGAACATTGGTTGAGAAATTGCCCAAAGTACCTTGCTGAGAAGGAAGCACAAGGAAACTAG

Protein sequence

MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN

Homology

[Close]

BLAST of IVF0018074 vs. ExPASy TrEMBL
Match: A0A5A7U2U6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00570 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE
Sbjct: 155 MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 214

Query: 61  DEHWLRNCPKYLAEKEAQGN 81
           DEHWLRNCPKYLAEKEAQGN
Sbjct: 215 DEHWLRNCPKYLAEKEAQGN 234

[Close]

BLAST of IVF0018074 vs. ExPASy TrEMBL
Match: A0A5A7SND1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001050 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKEMEANV TTEKKLVGGSSSKTRVG   ++KKRK  TPK SEGKKVAKGKCY C+E
Sbjct: 37  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHE 96

Query: 61  DEHWLRNCPKYLAEKEAQGN 81
           D HWLRNCPKYLAEK+AQGN
Sbjct: 97  DGHWLRNCPKYLAEKKAQGN 116

[Close]

BLAST of IVF0018074 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKE+EAN+ TTEK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DEHWLRNCPKYLAEKEAQ 79
           D HWLRNCP+YLAEK+A+
Sbjct: 131 DGHWLRNCPEYLAEKKAE 148

[Close]

BLAST of IVF0018074 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.6e-26
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKE+EAN+ T EK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DEHWLRNCPKYLAEKEAQ 79
           + HWLRNCPKYLAEK+A+
Sbjct: 131 EGHWLRNCPKYLAEKKAE 148

[Close]

BLAST of IVF0018074 vs. ExPASy TrEMBL
Match: A0A5A7U7R6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00770 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.6e-25
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKE+EAN  TTEK+LVGGSSSKTRVG   ++KKRKG TPK SEGKKVAKGKC  CNE
Sbjct: 27  MGKGKEVEANFATTEKELVGGSSSKTRVGTLNMKKKRKGMTPKNSEGKKVAKGKCDHCNE 86

Query: 61  DEHWLRNCPKYLAEKEAQ 79
           DEHWLRNCPKYLAEK+A+
Sbjct: 87  DEHWLRNCPKYLAEKKAE 104

[Close]

BLAST of IVF0018074 vs. NCBI nr
Match: KAA0050233.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ98173.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 8.39e-49
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE
Sbjct: 155 MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 214

Query: 61  DEHWLRNCPKYLAEKEAQGN 80
           DEHWLRNCPKYLAEKEAQGN
Sbjct: 215 DEHWLRNCPKYLAEKEAQGN 234

[Close]

BLAST of IVF0018074 vs. NCBI nr
Match: KAA0025761.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK09693.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 1.23e-38
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKEMEANV TTEKKLVGGSSSKTRVG   ++KKRK  TPK SEGKKVAKGKCY C+E
Sbjct: 37  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHE 96

Query: 61  DEHWLRNCPKYLAEKEAQGN 80
           D HWLRNCPKYLAEK+AQGN
Sbjct: 97  DGHWLRNCPKYLAEKKAQGN 116

[Close]

BLAST of IVF0018074 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 1.48e-36
Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKE+EAN+ TTEK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DEHWLRNCPKYLAEKEAQ 78
           D HWLRNCP+YLAEK+A+
Sbjct: 131 DGHWLRNCPEYLAEKKAE 148

[Close]

BLAST of IVF0018074 vs. NCBI nr
Match: KAA0051354.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.15e-35
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKE+EAN  TTEK+LVGGSSSKTRVG   ++KKRKG TPK SEGKKVAKGKC  CNE
Sbjct: 27  MGKGKEVEANFATTEKELVGGSSSKTRVGTLNMKKKRKGMTPKNSEGKKVAKGKCDHCNE 86

Query: 61  DEHWLRNCPKYLAEKEAQ 78
           DEHWLRNCPKYLAEK+A+
Sbjct: 87  DEHWLRNCPKYLAEKKAE 104

[Close]

BLAST of IVF0018074 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 1.21e-35
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1   MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNE 60
           M KGKE+EAN+ T EK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DEHWLRNCPKYLAEKEAQ 78
           + HWLRNCPKYLAEK+A+
Sbjct: 131 EGHWLRNCPKYLAEKKAE 148

The following BLAST results are available for this feature:

BLAST of IVF0018074 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2U6	2.1e-36	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G0057...	[more]
A0A5A7SND1	1.7e-27	82.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G0010...	[more]
A0A5D3E1U5	1.9e-26	78.21	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010...	[more]
A0A5A7T0L9	9.6e-26	76.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029...	[more]
A0A5A7U7R6	3.6e-25	79.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00770...	[more]

BLAST of IVF0018074 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050233.1	8.39e-49	100.00	gag/pol protein [Cucumis melo var. makuwa] >TYJ98173.1 gag/pol protein [Cucumis ...	[more]
KAA0025761.1	1.23e-38	82.50	gag/pol protein [Cucumis melo var. makuwa] >TYK09693.1 gag/pol protein [Cucumis ...	[more]
TYK29862.1	1.48e-36	78.21	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051354.1	1.15e-35	79.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035756.1	1.21e-35	76.92	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018074 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 54..70 e-value: 0.0032 score: 26.6
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 53..70 e-value: 2.2E-5 score: 24.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 54..70 score: 8.845061
None	No IPR available	GENE3D	4.10.60.10		coord: 30..79 e-value: 9.5E-7 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..29
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 36..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018074.2	IVF0018074.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding