IVF0018065 (gene) Melon (IVF77) v1

Overview


Name	IVF0018065
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LOL2
Location	chr12: 21224013 .. 21227029 (+)
RNA-Seq Expression	IVF0018065
Synteny	IVF0018065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATATTAAACCTAAAATGGCATAAGGGGAGAATTGAGAAGTTAGGGAGCCAAAGCGCGGGACGCCGTTGTCCATGGAAACAACAACATGACCGATTCTTAAGGCGACAGATCGAGAGAATGGATGTCCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCATCCTTGCCTCTACCGCCGCAGCCGCAACTTTCTCGTGAGTACTTCCGAGGGTTATTTCAGATTTTGTGTTTCCGAATCTTCGTCTTGGTTCTGAGATTCGATGCATTTAATTTCTTCCCCATCTCTGTCTCTTTATACATTTAATTGAACTTCTGCTGCTTGACTTTAAAAACTTAAGCTGACATTTTCCTTTTGTAATTTTTGGACAATATTTTCTTGTGTTCCTGTTTGTGAGCGAATTGATTTGGTGGTTTCTTCCCACTGCTTGTAACTGGCGAATATGTTAACCTAACTTAGCAGGAAAACTCTTATTGAAATTTGTCCAATTCGAATCTATGCAGTGTGAATGGACAGTTTAACTTTGGTTATTGATTTGCTGCGACTTAAGCAAAATGTTAGTTTTCATTGTTTATAGAATCAATATCATTTGATATTAGTGCAACCAAATTTCGGTCAAAGCCTCATTCCTGTAAGCATGTTCTGTTGCAAGTCCCAAATATTGTCATTGTATGTATTTAAAAATCTCCTCATTGGAAACGTTTTGATCAGCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGGTGTTCAACAGTTAACTTTGTGTTAGAAGGTTCCTTCTCTTTCCTTCCTTCTTTTTTAGGTTTTACTATCATTCTCTTTCTTAAAAATTATCTTGTTCATATGCTATCAGCTTTTTGCTAAATTTTCACCAATTCCGAGGCATGTCTATGTTGGTTCTAAGATGCACTTGTTTATATGCTGTTTTCTTTCTACTGCTTCCTATTTCATTAGAGGGTTGATTGTTTGGCTGTAGTTTTGAATAGTTGTTTCACGTGGTTGTGCTGGCCTGCTGGGTGGTGCCTGTGGATCACTTTCTTTTGAGCTATATGTAATTATTGAGCTATACATTATGTGATTGCGCCTCCAAACATTAATGCTCTACATAAAACCAAGTATTGTAGGATCTACAATATTTTTCAGATGGGGCATAGATGAGTTTAGCAACCTTATAGACATTCAAATCTAAATAAATTTCCCTCATTTGTGCATTCAAGGTATCCACACCCTTGTTATCGGTGCCACCTAGTATAATTGTTGAATTCCATCGTCTTAGCCTTGGGACAAGCCAACACTAGTCAAGTTTATAAATTAAATAATTGTTCATAGCCTGAAATCCAATGGATCATTACTTTGTCAAATTTTTTTCATGCCTTACTATTCAGCATCAACTCAAGAAGTCTTCATAACGACTTGCTGTCGATGTCTTACGATTCAACTTTTCCTTTTCTTTTATGATTCAACTTTTCCTTTTCTTTTATTAACGCGTTACATTCTCTTTCCAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCGGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGATGTTCTTCGTGTACCAGTGTGACAGAAATTGGGGTATGTCAATTTATATTCTGGCGAAGTTTTTTCTAGGAAAATATTTATAGTGGAGTCAAAATCTTTCTGATTGTCTCATTTATTCATTATGTTGAAGCATGATTTACTGGAAATGAGACTTTTCTTTAATCATTGGGTGAGAAGTTTGTTCCTTGTCTAAAATAAAATCAGATAAGGCATGGATGTGTTGAAACTAATCCTTCCCATCACTCAATGTGTCGGCAAGGACCATGGAGCAGAAGCCATTTTTCTACAGTCGTCTTGTTTGATGGAATTATATTGTAATGTGCAATATGTATCGAAGTAGATACTTACCAAATTCATACCAATTGATAGCATTAGAACTCTTTGAATATATATAAGTTTTAATACTACTTCGGTCCAAGAACTTTCAATATCGATTCAATTTGGTCTCTCTATTTTCAAAATGTTCAAAATAGTCTCTGTACTCTTAAATTTCCCTCAATTTGGTTCCAATATTTTCAAAATGTCACTTTTGGTCTTTGGTACTTTTTGAAAAACGAACATTTTGATCCCTATACGCTAAAACTTAACATAAACAAAAAAAGCTAAAAATGGAAATTAAGATTAAAAAATGTTCGCTTATTGTGAGTACAATGATCAATATGAACATTTTAAAAGTATGGAGACCAACTTGGACTAAATATGAAAGTATACGAACTAAATTAAACTAAACTGCTCTATATATATATAATCTCTTCATTTTCTAGTGAAACAAGGGTGATCATTTGGGTTAATTTCAACTTTTCTTGGCTTTGAAGCTTGATTGTTTGTTAATTGTATGAATGAGAAACCATGACAGTAAATTTTAGCCTCTGACGGATTTAAATGGGTGTGCAGGTTCATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTTCAATAGAATTTGTTTTTCTGAGTTTCATTTAGGAAAAGATGTTCCATTTTCTGAGTTTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAAAGAAAAGAGAAAACTATCAATCATTAGTGCCACTTTTATTTCCTTATTATTAGCTATTGAGTTTATGTAAAGAAACTTAGGAACTCACCTTCTTAACTTCCAACATTTTTTTTTTATCTTAAGTTTTTTGACTTGTGACTTGACTTGTTGCTTTGTGTTCATTTTTTTAATGCTGCTGATTGGAGCCCTTATTAGTTGCTGCCAATCTCTGGGGTGTACTTAATTGTAATTTGTAAATGGTATGAATCTTTTTTATTGTCAAATTGTTGAGGTATAATTTATTGAGATGAACCGTCTAAAT

mRNA sequence

AGATATTAAACCTAAAATGGCATAAGGGGAGAATTGAGAAGTTAGGGAGCCAAAGCGCGGGACGCCGTTGTCCATGGAAACAACAACATGACCGATTCTTAAGGCGACAGATCGAGAGAATGGATGTCCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCATCCTTGCCTCTACCGCCGCAGCCGCAACTTTCTCCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGGTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCGGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGATGTTCTTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTTCAATAGAATTTGTTTTTCTGAGTTTCATTTAGGAAAAGATGTTCCATTTTCTGAGTTTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAAAGAAAAGAGAAAACTATCAATCATTAGTGCCACTTTTATTTCCTTATTATTAGCTATTGAGTTTATGTAAAGAAACTTAGGAACTCACCTTCTTAACTTCCAACATTTTTTTTTTATCTTAAGTTTTTTGACTTGTGACTTGACTTGTTGCTTTGTGTTCATTTTTTTAATGCTGCTGATTGGAGCCCTTATTAGTTGCTGCCAATCTCTGGGGTGTACTTAATTGTAATTTGTAAATGGTATGAATCTTTTTTATTGTCAAATTGTTGAGGTATAATTTATTGAGATGAACCGTCTAAAT

Coding sequence (CDS)

ATGGATGTCCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCATCCTTGCCTCTACCGCCGCAGCCGCAACTTTCTCCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGGTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCGGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGATGTTCTTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTTCAATAG

Protein sequence

MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

Homology

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BLAST of IVF0018065 vs. ExPASy Swiss-Prot
Match: O65426 (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.1e-35
Identity = 71/126 (56.35%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEP-------ITPSLPLPPQP-QLSPADMAQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP 123
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of IVF0018065 vs. ExPASy Swiss-Prot
Match: Q704V3 (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-26
Identity = 58/106 (54.72%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 16  PGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHE 75
           P  +   P +P PP P L+  ++ QMVCG+CR LL Y +GA YV C+ C T+N+VLEAHE
Sbjct: 47  PCLQDSVPLVPPPPSPYLN-KEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHE 106

Query: 76  VGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 122
           VG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Sbjct: 107 VGKVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]

BLAST of IVF0018065 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96
           +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA S
Sbjct: 70  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARS 129

Query: 97  VRCSSCTSVTEIG 110
           V+C+ C  VT +G
Sbjct: 130 VKCAVCNFVTSVG 142

[Close]

BLAST of IVF0018065 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-19
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96
           +MAQ+VCG C  LL Y++GA  VQCS C TVN  +EA++V  V CG+C +LLMY YGA S
Sbjct: 101 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARS 160

Query: 97  VRCSSCTSVTEIG 110
           V+C+ C  VT +G
Sbjct: 161 VKCAVCNFVTSVG 173

[Close]

BLAST of IVF0018065 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.0e-18
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 27  LPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVG 86
           +PP P   P DMA ++CG CR +L Y +GA  V+CS C T N V           + +V 
Sbjct: 39  VPPPP--PPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVA 98

Query: 87  QVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 129
           Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 99  QINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

[Close]

BLAST of IVF0018065 vs. ExPASy TrEMBL
Match: A0A5D3DST5 (Protein LOL2 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00790 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.7e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 133
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of IVF0018065 vs. ExPASy TrEMBL
Match: A0A1S3B6K2 (protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.7e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 133
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of IVF0018065 vs. ExPASy TrEMBL
Match: A0A5A7UQS3 (Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001680 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 133
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 131

[Close]

BLAST of IVF0018065 vs. ExPASy TrEMBL
Match: A0A1S3B6Q2 (protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 133
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 131

[Close]

BLAST of IVF0018065 vs. ExPASy TrEMBL
Match: A0A0A0LXE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-67
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS +DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLS-SDMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQAAPPTNFVQ 133
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 131

[Close]

BLAST of IVF0018065 vs. NCBI nr
Match: XP_008442535.1 (PREDICTED: protein LOL2 isoform X3 [Cucumis melo] >TYK26415.1 protein LOL2 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 279 bits (713), Expect = 8.16e-95
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 132
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of IVF0018065 vs. NCBI nr
Match: XP_008442544.1 (PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (697), Expect = 2.18e-92
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 132
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 131

[Close]

BLAST of IVF0018065 vs. NCBI nr
Match: XP_011653178.1 (protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 266 bits (681), Expect = 6.22e-90
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS ADMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQAAPPTNFVQ 132
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of IVF0018065 vs. NCBI nr
Match: XP_004146601.1 (protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_013266 [Cucumis sativus])

HSP 1 Score: 261 bits (668), Expect = 5.78e-88
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS +DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLS-SDMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQAAPPTNFVQ 132
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 131

[Close]

BLAST of IVF0018065 vs. NCBI nr
Match: XP_022927005.1 (protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo subsp. pepo] >KAG6583998.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019620.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246 bits (627), Expect = 1.04e-81
Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60
           M++HEIEKDEDDGPPPGWEPITP LP PP   LS +DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLS-SDMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CS CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQ
Sbjct: 61  CSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 132
           QGQAAPPTN VQ
Sbjct: 121 QGQAAPPTNSVQ 131

[Close]

BLAST of IVF0018065 vs. TAIR 10
Match: AT4G21610.1 (lsd one like 2 )

HSP 1 Score: 147.9 bits (372), Expect = 5.7e-36
Identity = 71/126 (56.35%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEP-------ITPSLPLPPQP-QLSPADMAQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP 123
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of IVF0018065 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-20
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96
           +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA S
Sbjct: 70  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARS 129

Query: 97  VRCSSCTSVTEIG 110
           V+C+ C  VT +G
Sbjct: 130 VKCAVCNFVTSVG 142

[Close]

BLAST of IVF0018065 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-20
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96
           +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA S
Sbjct: 103 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARS 162

Query: 97  VRCSSCTSVTEIG 110
           V+C+ C  VT +G
Sbjct: 163 VKCAVCNFVTSVG 175

[Close]

BLAST of IVF0018065 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-20
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96
           +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA S
Sbjct: 70  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARS 129

Query: 97  VRCSSCTSVTEIG 110
           V+C+ C  VT +G
Sbjct: 130 VKCAVCNFVTSVG 142

[Close]

BLAST of IVF0018065 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-19
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 27  LPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVG 86
           +PP P   P DMA ++CG CR +L Y +GA  V+CS C T N V           + +V 
Sbjct: 39  VPPPP--PPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVA 98

Query: 87  QVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 129
           Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 99  QINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

The following BLAST results are available for this feature:

BLAST of IVF0018065 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65426	8.1e-35	56.35	Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1	[more]
Q704V3	2.4e-26	54.72	Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1	[more]
Q93ZB1	2.8e-19	57.53	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	4.8e-19	56.16	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
P94077	4.0e-18	42.48	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of IVF0018065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DST5	1.7e-72	100.00	Protein LOL2 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B6K2	1.7e-72	100.00	protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1	[more]
A0A5A7UQS3	1.2e-70	99.24	Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B6Q2	1.2e-70	99.24	protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1	[more]
A0A0A0LXE3	2.9e-67	96.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1	[more]

BLAST of IVF0018065 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442535.1	8.16e-95	100.00	PREDICTED: protein LOL2 isoform X3 [Cucumis melo] >TYK26415.1 protein LOL2 isofo...	[more]
XP_008442544.1	2.18e-92	99.24	PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 iso...	[more]
XP_011653178.1	6.22e-90	96.97	protein LOL2 isoform X1 [Cucumis sativus]	[more]
XP_004146601.1	5.78e-88	96.21	protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_0...	[more]
XP_022927005.1	1.04e-81	90.15	protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo s...	[more]

BLAST of IVF0018065 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21610.1	5.7e-36	56.35	lsd one like 2	[more]
AT1G32540.2	2.0e-20	57.53	lsd one like 1	[more]
AT1G32540.1	2.0e-20	57.53	lsd one like 1	[more]
AT1G32540.3	2.0e-20	57.53	lsd one like 1	[more]
AT4G20380.2	2.9e-19	42.48	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 78..107 e-value: 3.4E-12 score: 43.8 coord: 40..70 e-value: 6.8E-14 score: 49.2
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 81..105 e-value: 4.2E-11 score: 42.5 coord: 43..67 e-value: 1.4E-7 score: 31.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..33
None	No IPR available	PANTHER	PTHR31747:SF17	PROTEIN LOL2	coord: 26..127
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 26..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018065.4	IVF0018065.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005634	nucleus