Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCTCAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG
mRNA sequence
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCTCAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG
Coding sequence (CDS)
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCTCAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG
Protein sequence
MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Homology
BLAST of IVF0018033 vs. ExPASy TrEMBL
Match:
A0A5A7T146 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G001160 PE=4 SV=1)
HSP 1 Score: 267.7 bits (683), Expect = 3.0e-68
Identity = 147/173 (84.97%), Postives = 147/173 (84.97%), Query Frame = 0
Query: 1 MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMS 60
MLQ R SS I CS QKDFCLKYIVVEKVVVSYILQPRMS
Sbjct: 350 MLQSRNSSSHIYCSRGCRRIKYVAAEKVVRSNMLHQKDFCLKYIVVEKVVVSYILQPRMS 409
Query: 61 SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 120
SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV
Sbjct: 410 SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 469
Query: 121 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 153
AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Sbjct: 470 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 522
BLAST of IVF0018033 vs. ExPASy TrEMBL
Match:
A0A5A7SNS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold999G00100 PE=4 SV=1)
HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 134/152 (88.16%), Postives = 138/152 (90.79%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR SSQICCSQKDFC +YI+ EKVVVSYILQPRMSSSQIC RE RPLKYVAAEKI
Sbjct: 139 MLQPRRSSSQICCSQKDFCHEYIIAEKVVVSYILQPRMSSSQICYRRECRPLKYVAAEKI 198
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
VLKYV EKIIVSNMLQPRRSSSQICCSQK FCLKYIV EKVVVSYMLQPR+SLS ICC
Sbjct: 199 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKYFCLKYIVGEKVVVSYMLQPRMSLSRICC 258
Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 153
REGRPLKYVAAKKI+V KYVAAKKIIVSNML
Sbjct: 259 CREGRPLKYVAAKKIIVFKYVAAKKIIVSNML 290
BLAST of IVF0018033 vs. ExPASy TrEMBL
Match:
A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)
HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 551 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 610
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ---------- 120
+VLKYV EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ
Sbjct: 611 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 670
Query: 121 ----------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 153
PR+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 671 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 730
BLAST of IVF0018033 vs. ExPASy TrEMBL
Match:
A0A5A7UEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004640 PE=4 SV=1)
HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 206
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ---------- 120
+VLKYV EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ
Sbjct: 207 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 266
Query: 121 ----------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 153
PR+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 267 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 326
BLAST of IVF0018033 vs. ExPASy TrEMBL
Match:
A0A5A7SLN4 (Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00010 PE=4 SV=1)
HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 128/152 (84.21%), Postives = 135/152 (88.82%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR S QICCSQKDFCLKYIV EKVVVSYILQPRMSSSQIC R PLKYVAAEKI
Sbjct: 58 MLQPRRSSFQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICYRRGGCPLKYVAAEKI 117
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
VVLKYV EKI+VSNMLQPRRSS +ICCSQKDFCLKYIVAEKVVVSY+LQPR+S S IC
Sbjct: 118 VVLKYVAAEKIVVSNMLQPRRSSFEICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICY 177
Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 153
R GRPLKYVAA+KIVVLKYV A+KI+VSNML
Sbjct: 178 RRGGRPLKYVAAEKIVVLKYVEAEKIVVSNML 209
BLAST of IVF0018033 vs. NCBI nr
Match:
KAA0035317.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 265 bits (677), Expect = 9.85e-84
Identity = 147/173 (84.97%), Postives = 147/173 (84.97%), Query Frame = 0
Query: 1 MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMS 60
MLQ R SS I CS QKDFCLKYIVVEKVVVSYILQPRMS
Sbjct: 350 MLQSRNSSSHIYCSRGCRRIKYVAAEKVVRSNMLHQKDFCLKYIVVEKVVVSYILQPRMS 409
Query: 61 SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 120
SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV
Sbjct: 410 SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 469
Query: 121 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 152
AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Sbjct: 470 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 522
BLAST of IVF0018033 vs. NCBI nr
Match:
KAA0032450.1 (hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 253 bits (645), Expect = 8.22e-82
Identity = 134/152 (88.16%), Postives = 138/152 (90.79%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR SSQICCSQKDFC +YI+ EKVVVSYILQPRMSSSQIC RE RPLKYVAAEKI
Sbjct: 139 MLQPRRSSSQICCSQKDFCHEYIIAEKVVVSYILQPRMSSSQICYRRECRPLKYVAAEKI 198
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
VLKYV EKIIVSNMLQPRRSSSQICCSQK FCLKYIV EKVVVSYMLQPR+SLS ICC
Sbjct: 199 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKYFCLKYIVGEKVVVSYMLQPRMSLSRICC 258
Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 152
REGRPLKYVAAKKI+V KYVAAKKIIVSNML
Sbjct: 259 CREGRPLKYVAAKKIIVFKYVAAKKIIVSNML 290
BLAST of IVF0018033 vs. NCBI nr
Match:
KAA0051981.1 (hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa])
HSP 1 Score: 249 bits (637), Expect = 7.17e-80
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 206
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR-------- 120
+VLKYV EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR
Sbjct: 207 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 266
Query: 121 ------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 152
+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 267 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 326
BLAST of IVF0018033 vs. NCBI nr
Match:
KAA0025375.1 (zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 240 bits (612), Expect = 2.58e-77
Identity = 128/152 (84.21%), Postives = 135/152 (88.82%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR S QICCSQKDFCLKYIV EKVVVSYILQPRMSSSQIC R PLKYVAAEKI
Sbjct: 58 MLQPRRSSFQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICYRRGGCPLKYVAAEKI 117
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
VVLKYV EKI+VSNMLQPRRSS +ICCSQKDFCLKYIVAEKVVVSY+LQPR+S S IC
Sbjct: 118 VVLKYVAAEKIVVSNMLQPRRSSFEICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICY 177
Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 152
R GRPLKYVAA+KIVVLKYV A+KI+VSNML
Sbjct: 178 RRGGRPLKYVAAEKIVVLKYVEAEKIVVSNML 209
BLAST of IVF0018033 vs. NCBI nr
Match:
TYK04576.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 249 bits (637), Expect = 1.11e-75
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0
Query: 1 MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 551 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 610
Query: 61 VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR-------- 120
+VLKYV EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR
Sbjct: 611 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 670
Query: 121 ------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 152
+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 671 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 730
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T146 | 3.0e-68 | 84.97 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7SNS6 | 1.5e-64 | 88.16 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3C2C8 | 1.3e-63 | 75.00 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7UEK9 | 1.3e-63 | 75.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SLN4 | 1.0e-60 | 84.21 | Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa ... | [more] |
Match Name | E-value | Identity | Description | |
KAA0035317.1 | 9.85e-84 | 84.97 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0032450.1 | 8.22e-82 | 88.16 | hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa] | [more] |
KAA0051981.1 | 7.17e-80 | 75.00 | hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa] | [more] |
KAA0025375.1 | 2.58e-77 | 84.21 | zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa] | [more] |
TYK04576.1 | 1.11e-75 | 75.00 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |