IVF0018033 (gene) Melon (IVF77) v1

Overview
NameIVF0018033
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr11: 24952757 .. 24953215 (+)
RNA-Seq ExpressionIVF0018033
SyntenyIVF0018033
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCTCAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG

mRNA sequence

ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCTCAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG

Coding sequence (CDS)

ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCTCAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG

Protein sequence

MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Homology
BLAST of IVF0018033 vs. ExPASy TrEMBL
Match: A0A5A7T146 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G001160 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.0e-68
Identity = 147/173 (84.97%), Postives = 147/173 (84.97%), Query Frame = 0

Query: 1   MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMS 60
           MLQ R  SS I CS                     QKDFCLKYIVVEKVVVSYILQPRMS
Sbjct: 350 MLQSRNSSSHIYCSRGCRRIKYVAAEKVVRSNMLHQKDFCLKYIVVEKVVVSYILQPRMS 409

Query: 61  SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 120
           SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV
Sbjct: 410 SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 469

Query: 121 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 153
           AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Sbjct: 470 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 522

BLAST of IVF0018033 vs. ExPASy TrEMBL
Match: A0A5A7SNS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold999G00100 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 134/152 (88.16%), Postives = 138/152 (90.79%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR SSQICCSQKDFC +YI+ EKVVVSYILQPRMSSSQIC  RE RPLKYVAAEKI
Sbjct: 139 MLQPRRSSSQICCSQKDFCHEYIIAEKVVVSYILQPRMSSSQICYRRECRPLKYVAAEKI 198

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
            VLKYV  EKIIVSNMLQPRRSSSQICCSQK FCLKYIV EKVVVSYMLQPR+SLS ICC
Sbjct: 199 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKYFCLKYIVGEKVVVSYMLQPRMSLSRICC 258

Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 153
            REGRPLKYVAAKKI+V KYVAAKKIIVSNML
Sbjct: 259 CREGRPLKYVAAKKIIVFKYVAAKKIIVSNML 290

BLAST of IVF0018033 vs. ExPASy TrEMBL
Match: A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 551 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 610

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ---------- 120
           +VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ          
Sbjct: 611 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 670

Query: 121 ----------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 153
                                 PR+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 671 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 730

BLAST of IVF0018033 vs. ExPASy TrEMBL
Match: A0A5A7UEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004640 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 206

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ---------- 120
           +VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ          
Sbjct: 207 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 266

Query: 121 ----------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 153
                                 PR+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 267 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 326

BLAST of IVF0018033 vs. ExPASy TrEMBL
Match: A0A5A7SLN4 (Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00010 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 128/152 (84.21%), Postives = 135/152 (88.82%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR S QICCSQKDFCLKYIV EKVVVSYILQPRMSSSQIC  R   PLKYVAAEKI
Sbjct: 58  MLQPRRSSFQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICYRRGGCPLKYVAAEKI 117

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
           VVLKYV  EKI+VSNMLQPRRSS +ICCSQKDFCLKYIVAEKVVVSY+LQPR+S S IC 
Sbjct: 118 VVLKYVAAEKIVVSNMLQPRRSSFEICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICY 177

Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 153
            R GRPLKYVAA+KIVVLKYV A+KI+VSNML
Sbjct: 178 RRGGRPLKYVAAEKIVVLKYVEAEKIVVSNML 209

BLAST of IVF0018033 vs. NCBI nr
Match: KAA0035317.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (677), Expect = 9.85e-84
Identity = 147/173 (84.97%), Postives = 147/173 (84.97%), Query Frame = 0

Query: 1   MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMS 60
           MLQ R  SS I CS                     QKDFCLKYIVVEKVVVSYILQPRMS
Sbjct: 350 MLQSRNSSSHIYCSRGCRRIKYVAAEKVVRSNMLHQKDFCLKYIVVEKVVVSYILQPRMS 409

Query: 61  SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 120
           SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV
Sbjct: 410 SSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIV 469

Query: 121 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 152
           AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Sbjct: 470 AEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 522

BLAST of IVF0018033 vs. NCBI nr
Match: KAA0032450.1 (hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (645), Expect = 8.22e-82
Identity = 134/152 (88.16%), Postives = 138/152 (90.79%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR SSQICCSQKDFC +YI+ EKVVVSYILQPRMSSSQIC  RE RPLKYVAAEKI
Sbjct: 139 MLQPRRSSSQICCSQKDFCHEYIIAEKVVVSYILQPRMSSSQICYRRECRPLKYVAAEKI 198

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
            VLKYV  EKIIVSNMLQPRRSSSQICCSQK FCLKYIV EKVVVSYMLQPR+SLS ICC
Sbjct: 199 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKYFCLKYIVGEKVVVSYMLQPRMSLSRICC 258

Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 152
            REGRPLKYVAAKKI+V KYVAAKKIIVSNML
Sbjct: 259 CREGRPLKYVAAKKIIVFKYVAAKKIIVSNML 290

BLAST of IVF0018033 vs. NCBI nr
Match: KAA0051981.1 (hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (637), Expect = 7.17e-80
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 206

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR-------- 120
           +VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR        
Sbjct: 207 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 266

Query: 121 ------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 152
                                   +S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 267 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 326

BLAST of IVF0018033 vs. NCBI nr
Match: KAA0025375.1 (zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (612), Expect = 2.58e-77
Identity = 128/152 (84.21%), Postives = 135/152 (88.82%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR S QICCSQKDFCLKYIV EKVVVSYILQPRMSSSQIC  R   PLKYVAAEKI
Sbjct: 58  MLQPRRSSFQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICYRRGGCPLKYVAAEKI 117

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICC 120
           VVLKYV  EKI+VSNMLQPRRSS +ICCSQKDFCLKYIVAEKVVVSY+LQPR+S S IC 
Sbjct: 118 VVLKYVAAEKIVVSNMLQPRRSSFEICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICY 177

Query: 121 HREGRPLKYVAAKKIVVLKYVAAKKIIVSNML 152
            R GRPLKYVAA+KIVVLKYV A+KI+VSNML
Sbjct: 178 RRGGRPLKYVAAEKIVVLKYVEAEKIVVSNML 209

BLAST of IVF0018033 vs. NCBI nr
Match: TYK04576.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (637), Expect = 1.11e-75
Identity = 138/184 (75.00%), Postives = 142/184 (77.17%), Query Frame = 0

Query: 1   MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKI 60
           MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI
Sbjct: 551 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 610

Query: 61  VVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR-------- 120
           +VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPR        
Sbjct: 611 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 670

Query: 121 ------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIV 152
                                   +S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIV
Sbjct: 671 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 730

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T1463.0e-6884.97Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7SNS61.5e-6488.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C2C81.3e-6375.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7UEK91.3e-6375.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SLN41.0e-6084.21Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa ... [more]
Match NameE-valueIdentityDescription
KAA0035317.19.85e-8484.97retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0032450.18.22e-8288.16hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa][more]
KAA0051981.17.17e-8075.00hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa][more]
KAA0025375.12.58e-7784.21zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa][more]
TYK04576.11.11e-7575.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018033.2IVF0018033.2mRNA