IVF0017989 (gene) Melon (IVF77) v1

Overview


Name	IVF0017989
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-binding protein 39
Location	chr01: 14963644 .. 14979715 (+)
RNA-Seq Expression	IVF0017989
Synteny	IVF0017989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGACGAGTATGATTATTTGGAGAAAACAGTTGAAAACCCCGAGGGACAAAAAGTGAAGGAAACTGCCAATGGCGGTGATGGAGAAATGAAATCTGGAGATAAGCATTATAGTCGGAGTTCAAAATATAAGAGTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCGAAATCGGATGATGAGTCACGTGATCGAGACCGGCATAGAGATAGGACTTCTTCCCGTCATCGGTCTAGGTCCAGAGAGAGGGACCGTGATAAGCATCGAAGCTCCAAGGAAAATAGGGGAAAAGATGACAGAGAAGGGAATCGGGAAGAGAGAAGCAGTAAGGACAGGGATGTGGACAGAGATAAAGAACGTTCTCATGATCGAGATAGACGGGGTAGAGATGGTGAAAGGAATAGGGAAAGAGAACGATCACGTCGAAGTAGAAGTCGTTCAGAAAGACATCGCAGTGATCGTGACGATGGCATAAGAGAGAGGAGCCGAGATAATGAACTCAGAGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGGTATTTTATACATTTATATTATTGTACCATGTATTTTGGTATTAGAAGCAGAGAGAACCAAAAGATTATTTGCGTTGTTCCTATAATTACTTTCACTCTCTAATGTCGAAACGGAAAACTGTTTCACCGAGTAATTTAATTTCATGTTATGTCAATGGATTATTGACATTGTTATGCTGCTTTGATACACTTTTGACCTTGATTTAGATTAGACATGGTGCATGGGCATTCTAAATGATGGTAGATAATGCTGCTTCACGATTGAAAAACAAACACTTGTATGGCGTTGTATGATCATGAATTGATCAGTATGCACTAGTCATTTAACAGTCTAATTGCTTCGAGGAATAAACTTACGGATTTCATTCCTTGGGTGGCTGTAAGGTCTGTCCAATGATCGGACCTCTCCTTCTTGTTTTCCATACATCATCCATCGTGAATATAGATTTTCATGAGATCCAAAACCATAAAACCAAATAAATGATGCCCTCCTTTTGTATGGTAGGCTAAGGTATAGCCAATGAGAGAACCATGTCACTGGAAGTTTTTGTTGTGGTCTGAGAAAACCTGTCTTCAATGGTCATCGTGATATATGGTCTTCTTAGAACATACTTGGTTATTTTATTGTTAATCATTATCCATTGAAGTGAACCTCAATTGGGTACTGTATGACATCCAGAAGCACGTCATTCACAAGGTTTTGCCTATTTCTTTCCCGATTAAGTTTTACAATGTCTATAAATGGAAGTACCCCCATGATGACATCCTTGGGTAAAATAAAATTGATAGTTGGAAATTCGTCTTCATAGTTTATAAGCGTTTACTGTAACAGTTTTCTGGTTTTCTCGAATTTCTCATAAAGATTAGTAATTAGGAAACCTTAGATGTGCAAGACTGCCTGCTGGTAGCAATTTTAATGGAAGAGGAATTCAATCCATTTCCAGTGTCCCTGCAGAACAACCATGAAGTTTGCTTTGGAGCTTTCTGTGTTTCAGTAATGGAGGTCATATTTAGTGGCGGTGACGTGACTTATTTTCACCATCACCACATTGAAGTCGAAGATTTAATTTTTTATCTATTCTGTTGCAGAAATGCTGGTGAGGGAGTTGTGGGCTTTACTTAAGAGATGAATTCCATCTTCTGATGCTTGTGGGAAATTCAATATTCAGTGGCTACTGGATTCTCATCATACATGAAATTATTTTGTTAATGTTTAATTTAGGTGTTGAAATAATTGTTTTGGAGAGTTTATAGTAATTTGAATGATTTTATTTTGGCAACCATTGCTTGCAATATTGTTTTTTGTACACCTTCAGATGCTCTCATTTCTCTTTTCATTTATTTTTAATAAATTTTAAATTACTAAAGTTTTTTCTAAGTTGAATTTCCAAAAATCTTGCATCTCTTTAACTATTAGTTTTGAGAACATGAACAAGTCATTCTTTATCTCCAATATCAGTTATTGCAATTGAATTTACGCTCCTTCCCTTGAATACTTCAGTTGATGTTTTACATGTAATATTGTACAAATATAAGACTGCAATAATTATTTCTTTCACTTTTTGTGTGGTTAATCCTTTCTCTGGAATATAAACTTTTAACGTGTTCTGTGTTAATGCAATTAGGTTCTTTGCTACTGCATCAATTCAACTTGATGACGCTGTTGTCATTTAAGATTTTATTATTTATGGAAGGTACAAAATCTGTGGTCAATCCATTGTATGACTATTTTGGCCTGATTCTTAACTATGCAATCAAGTACTATCAGTATGTCCCATCCTTGTTTGTTAAATTTGTGGAAAGGGATTTTTCGTATCTCTGGGTTGTTTCTTACCTATTAAAATGCGTAGGGGACTTAATTTTATAAGCTTTTCATAAAAAGTGGAAAAATACATGTTCTGGATTGTTCTACTTTTGCCATGATTTAAGGATGTAACTATCTCATTGTATTATTTATTTATTTCAACGTGTGTTTTCTTCACCCTTTTAAATAGAGTTCTTTCTAGTCCACTTATGGGTGGTCTCTTTCCCATGACTTATTTATGCATCTGAAGGGTGTGGTTATAATTTTGTTAGCTAATAACAAAGGATGTCTCTGACCAATGTTTTTTCTCCATCCCATAGAAGATATAAAGATAAAAAGGACGAAGCAGCTGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGGTAAATCTTCTATTGGGACACGAGATATTCCAATCTTTCTTTTTCATATTGCATATTTTTCTTTTTATGAAAAAATATATTTTCATAAGAACATTCAAATTTCATTTTAATACTTATTGCATATTTTTAATAACGTCTTGTCAACTGACATTTTCTGCATCGCTTGGCCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTACGAGTTCTTCTCCAGGGCTGGTAAGGTTTGTATGCTCGTCAAATTGTTTCTATCACATTTTCAACTCTTTTAAACTTCTCTAAGAATAGAATGTTAGTATTGATCAAACCAAGCTGCTTTATTTTATTCCTATTGTCCTATTCTGTGGGAAGTTTAACTGCATTTTTTTCATTGAACTGCTATGTTGCATTGTACAACATACAACTAATCCAGACTATCCATAGAAATTATACATCTTTATCAGTCTTTTTGTCAATGCCAAGCAACATCTTATGTATGGTAAGAAATTGGGTGTCTCTGATAAGTATGCTTTTGTGTGTGGAATGTTTATGATTGGGTGGGGGAAGGCTATGTGACACTGACAATTCATCCTCTGTATTTCATATTCTCTCTATTTCTGAAGCCTCTTGCTAGACCCCCAATTTTATTTACATATAACAGAAGGAAGAAAGACAAGGGGACACGTGGAGATGGTGAGGAAAGCAAGGAGGGGGGACCGCAAGTTAGTTAGTAGTGGAACGGAAAAAGGGAGCAGGCAGAGCAGAAAGGACAATTGTCGGGTAAAAGGTGGGCTGCTCCCCTGCCTGAAGAAAGAGGTAACGCAGACTGAGAATAGAGCAGGAGACCGTTGCTGGAGGAAGGCTGCACTTATAAATAAGCCCTTTCGTAGGTGTTAGAAGGATGTTTTTCATTCTGAGTTTTTGTGTGGTGTAGTAGGACAGTAATAGAGAAATTATTACTGTAAGTTCCTTTTGTTTTGTGTTGTGTTTTCCTTAGAGGAAGATCAGTTCTAGTGTTTTTTTGGGCTGTAAGTTTCTTGATATTTTGGCAAATTAAATCAAAGTATTCCTAAGGAATTCTGGAATCCTAACATTTGGTATCAGAGCACTATTACCTGGGAGAAACCTACCACAATGGCGAGGAGCACCGAAGAAAGACTGGACATGGTAGAACAAGGAATCTCGAGGCTACCATTGTTGGAGGAAAATATTTCTCTTCTGTCAAAAACGATTACGGAGATGAACGCTCAGATTGACAAGCAATACCAACAACAGCAAGTGATATTGAAATATTTAGAAGGCATCCTACGAGACGACTCACCCGGTAAACAGGTGGTTGAAGGTTCCTCGAGCAAAACCCAGATGGAAGAAACGACCATAACCGCTGTTTCTAATGATCCGAACATCGAAGGAAAGACCGAGGAAGGACCGGCGTTGGACCGGAGCAAGTTTAAAAAAGTAGAAATGCCGATATTCACGGGGATCGACCCTGATTCGTGGCTATTCCGGGCCGACAGATACTTCAAAATACACAATCTATCTGACTCAGAGAAGTTAACCGTGGCGGTCATCAGTTTCGACGGGCCAGCGTTGGACTGGTACAGATCACAAGAAGAAAGAGAAACGTTCAAGGGATGGCACGACCTGAAACAGAAAATGTTGGTGAGATTTCGGTCTATCCGCGACGGCACGTTGGTAGGGCGATTCCTTACCATTAAGCAGGAGACGACCGTGGAGGAATATAGGAATCGGTTTGACAAATTTCTGGCACCGGTGGCGTTCCTACAGCCGGTGGTTTTAGAAGAGACCTTCATGAACGGCTTGAGCCCATGGTTAAAGTCAGAAGTAGAGACGTGGGAGCCCGTTGGGCTGGCCCAAATGATGAAAATGGCCCTAAAGATAGAAAACAGAGAGATGGTCCGGAAGGAATGCGGGCTGAGCAGCGCCTACGATAGCAAGGCGGCCCAGCGGGCAGCCAATACGCGTAATATAAACTCCTCACCAATGATTGAAAACACGACTGCAGGCGGCTGGCCAATGAGAACCATCACGTTGAGGGAAGTCGCGACTGGGGAAAACCGACGGGAAGGGCCAACAAAGAGACTAACGGATGCCGAATTTCAAGCCCGCCGGGAAAAGGGGCTGTGTTTCCGATGTGGTGAGAAATATCACGCAGGGCATAGATGCAAGACAAAAGACAGCAAGGAGCTGCGTATGCTACTAGTAAAAGAGAATGGAGAAGAGTTAGAGATCATCGAGGAAGAATTCTTTGATGCCGAGACAGAGATAAAGCCACCAGAAGAAAAGAGCGTGGAAAACTTGAACATAGAGTTATCTATCAACTCGGTGGTGGGGCTAACGAATCCAGGAACAATGAAGGTAAAAGGGAGGTTGGGAAAGGAAGAGGTAGTTGTCCTGATCGATTGTGGGGCTACCCACAACTTCATCGCCGAGAAGTTGGTGGAGAAGCTACAGCTGCCAATGAAGGAGACGCCTAACTATGGAGTGATACTTGGGTCGGGAACATCTATAAAAGGAAAGGGTGTGTGTGATAAGGTGGAACTGTGGCTGGGAAATTGCAAGGTCACGGACAGCTTTTTGCCTTTGGAGTTGGGAGGAGTCGACGCCATTTTAGGAATGCAATGGCTGCATTCGATAGGCACCACCGAGGTTGATTGGAAGAATCTGATACTTACGTTCTTCGAACATGGCAACAAGGTAACCATCAAAGGGGATCCGAGTCTCACGAAAACACAAATCAGCCTCAAGGGAATGATAAAGAGCTGGGATACGGAGGATCAAGGGTACCTAGTGGAGTGTCGAACCTTGGAAAAAGAAGGCATGGAAGACCGGGAGGTAGACACCCAAATCACTGAAACAGAGGGAGGAAGGATGACTGCAATTCTCAATAAGTTCAGGGATGTATTCGAACGACCAAACAGACTCCCACCCCAACGAGGGATAGAGCATCATATATACCTAAAACAAGGAGCTGATCCGGTCAATGTCCGACCCTACCGGTACGCACACCAACAGAAAGAAGAGATGGAGAGATTGGTGGATGAGATGCTCAGTTCGGGAATCATCAGGCCAAGCACCAGCCCATACTCCAGCCCCGTATTGTTAGTAAGAAAGAAGGATGGGAGCTGGAGATTCTGTGTCGACTACAGGGCATTGAACAATGTGACAGTGCCGGACAAATTCCCAATTCCAGTCGTGGAGGAGCTTTTTGATGAACTGAATGGGGCTGACGTCTTCTCCAAGATTGACCTCAAAGCTGGGTACCACCAAATTAGGATGCATCCCGAAGACATTGAGAAGACAGCCTTCCGAACCCACGAGGGGCATTATGAGTTCATGGTAATGCCGTTCGGCCTCACCAACGCCCCTTCAACTTTCCAAGCATTGATGAATCAGGTATTCAAGCCCTTCTTGAGACGATTTGTACTTGTTTTCTTCGACGATATATTGATTTACAGCAAGGGAATGGAGGAGCACGGACAACACCTTGAAGTGGTGTTGGAAATTTTGAGAGAAAGCGAGTTATATGCCAACTTCGACAAATGTCATTTTGCCAAGACCAGGATCAGCTACTTGGGACATTACATTTCGAAGAAAGGTATTGAGGTGGATCCCGAAAAGATTCGTGCAGTAAAGGAGTGGCCAGCACCTGCGAACGTAAGGGAGTTGAGAGGATTCCTGGGGCTTACCGGCTACTACCGCCGCTTTGTGCAAAACTATGGAAGTATATCAGCACCTTTAACACAGCTGTTGAAATCAGGGGCGTATAAGTGGACAGAGGAAACAGAGACAGCCTTCGAAAAACTCAAGAAAGCCATGATGACTTTGCCGGTATTGGCCATGCCTGACTTCAACTTGCCCTTCGAAATCGAATCTGATGCATCAGGATTTGGGGTAGGGGCGGTGTTGGTTCAAGACAAGAAACCGGTAGCTTACTTCAGCAAAGTCCTAAGCACGCGGGATCGGGCTAGACCAGTGTATGAGCGTGAACTAATGGCAGTGGTGTGGGCTGTGCAGCGATGGCGACCATACTTGTTGGGGAGAAAATTCACAGTGAAAACGGACCAAAGATCCCTTAAGTTTCTGCTAGAACAAAGAGTAATACAGCCACAATACCAGCAATGGATTGCTAAGCTGCTTGGTTATTCGTTTGAAGTGCTGTACAAGCCTGGATTGGAAAACAAAGCCGCAGATGCCTTGTCCAGAATAGGGCCCACGGCACACTTGAACCAACTTACAGCCCCGGCTTTGTTGGATGTGGAAGTGATTCAGAAAGAGGTTAGAAAGGACCCAGCCCTGCGAGAAATCCTCTCAATGATCGAAGAACAGGGTATAGAAATCCCACATTACACTTGTCATCAAGGAATACTGAAGTTCAAGGGAAGACTGGTTCTATCCAAGGCTTCTACACTCATTCCCACCATTATGCACACATATCATGACTCGGTGTTTGGAGGGCACTCAGGATTTCTTAGAACCTACAAAAGAATGGCCGGCGAGTTGTATTGGAAGGGAATGAAGAGGGATGTTCAAAAATACTGCGAGGAATGCATGATTTGCCAGAAAAATAAATCATCTGCTCTATCCCCAGCTGGATTGCTGCTGCCCCTTGAAATCCCAGACGCCATCTGGAGTGACATCTCCATGGATTTCATCGAAGGGTTGCCTAAATCATACGGATGGGAAGTGATTTTGGTAGTTGTGGACCGGCTGAGTAAGTATGCACATTTCCTCACTCTTAAACATCCATACACTGCTAAGACTGTGGCTGAAGTGTTTGTTAAAGAAGTAGTAAGATTGCACGGGTTTCCCAAATCCATAGTTTCAGACCGAGATAAAATCTTCATCAGTCATTTTTGGTCCGAAATGTTCAAGCTAGCTGGGACCAAACTAAACCGAAGTTCTTCCTATCATCCTCAAACGGATGGACAAACCGAAGTAGTTAACAAGAGCGTGGAGGCTTACCTCAGATGTTTTTGTGGAGAAAAACCGAGAGATTGGAGCCAATGGCTGCACTGGGCCGAATACTGGTACAACACCACTTACCATGGATCAATTGGTATCACCCCCTTCCAAGCAGTATACGGGAGACTTCCACCACCTTTGATCCAATACGGAGAGATGGAAACCCCTAATTCCACTTTGGACCAGCAACTAAGAGACAGAGATGTTGTATTGGGGGCACTGAAGGAACACTTACGAGTGGCCCAGGAAAGAATGAAGAAATTCGCAGACTTAAAAAGGAGAGATGTGGAGTTTCAAACCGGGGATTTTGTGTTCCTCAAACTGAGACCATACCGGCAAACGTCCCTTCGAAAGAAACGAAATGAAAAACTATCTCCCAAGTACTTCGGACCATACAAAATCTTAGAAAGAATTGGGACCGTGGCATACAAGCTGGAACTACCTAGCAATGCAGCCATTCATCCGGTGTTCCACGTATCTCAACTTAAGAAAGCAATAGGGAACATCCAGGAAACCCAATCCCTTGATCCATTTGTCAACGAATGCCATGAGTGGATCACTCAACCGGAGGAAATCTATGCTTATCGAAAGAACCAGGCCACAAAGGAATGGGAAGCACTAGTACAATGGAAGGGACTGCCCCCGCACGAGGCCACCTGGGAAAATTATGCTGATCTGAAAGTACAATTCCCTGAGTTCCACCTTGAGGACAAGGTGGATTTAGAGGAGGAGAGTGATGCTAGACCCCCAATTTTATTTACATATAACAGAAGGAAGAAAGACAAGGGGACACGTGGAGATGGTGAGGAAAGCAAGGAGGGGGGACCGCAAGTTAGTTAGTAGTGGAACGGAAAAAGGGAGCAGGCAGAGCAGAAAGGACAATTGTCGGGTAAAAGGTGGGCTGCTCCCCTGCCTGAAGAAAGAGGTAACGCAGACTGAGAATAGAGCAGGAGACCGTTGCTGGAGGAAGGCTGCACTTATAAATAAGCCCTTTCGTAGGTGTTAGAAGGATGTTTTTCATTCTGAGTTTTTGTGTGGTGTAGTAGGACAGTAATAGAGAAATTATTACTGTAAGTTCCTTTTGTTTTGTGTTGTGTTTTCCTTAGAGGAAGATCAGTTCTAGTGTTTTTTTTGGGCTGTAAGTTTCTTGATATTTTGGCAAATTAAATCAAAGTATTCCTAAGGAATTCTGGAATCCTAACATTTCTCCAACATTTGTGCTAGGTTCTAGATAATCATGAGACCTCTGGGATGCGGGGGAAAGTGGGGTTTTCAACTCCACAGTTAGGGTCTGTCTCTAAATTTACTGAGACCATAGGGACTGGGTTTCGGGATTTGGGTTTCAATGTGATACCATCCCTTGCAGCATGATTCTTTGTGGTATATGATAAGATTATATTGAGTATATTCAGACAACAGACCAATTGTTAGAATTCGTGCTTGGTGGGTATCGGGACTTCTAGGAACTTGGGGAACTCATGATGTTTGTTTTGTTTTTCTGTAGTAATCTACTGGTTGATGGAAGATCTTTCCAATTGGTCTATATGATAGGCTGATGAAAACTTTTGAACAATGTGTTTGATGCTTGGTTGGTTCAAGCTGTACCCCCTCCTCTCTCTTGAAGATAATTTATTCTTGTCAATGAGTTTCTTGTATCTATGGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCATTTAAAAATTATTTCTAATTTATTCTTAATGAAAATTGAGTTTCTTAGATGCTATAGATGAAAAACATCAGCCTGGAAAATCTCTCTTTCTTTTGTTTATTATTTTTTTTTTTACTCGATACATTGAGCTTTGTAAGTTATATCCATAGCTAAAAAAGTCATCAGCCAGGCAAGTCATAGCTGTCCAATTTTTCTTTTCATTTGATGTTACTAATTTCGTACATGATGTATCTCTCTAATTCATGGGACTCAACTTACAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCACGGCGTTCTAAAGGCGTTGGGTAAGATTAGTGTGCTTGATGATGTTTACTTGGGTTAATTGGAGTTCGAATATTTTTTATTCACGTCAACCCGTATTTCATATTTTGGTTATTGTCTTGAATCAAATTCCATTGCTTTTTCAAAGTTCAATGAAGGTTTAAGACAAAATGTGATAGAATTTTGAGTCTTCTCCTGAAGAAGAAGAATATATTGCCAAAATAATATAAATTTAAAAGAATGATTTTCTTAAATAGAAAAAACAATCCATTACAAAGAAGGAAAAAATGAATTTGGCTAATATAATACAACCAATACAATAAAATATAATACTAGAAAGGAAATAATCGATATATGTGTGTATATATATTTAATAAGACGAGCAAAAAAGTATAAATTTTAGATTCTGTATTATAGACAGAAGAAGGGGGAACAAATCAGCTTACGATTGTAGGTGGAGAAAACCCTGCTTAAACTACAAAAGGAGGGCCTTCCAAAAGTGCAATAATCACAAAAGAAATTTTTGTGGTTTGAGCATTACCAAAAAGTAATGTAATGAACATTATTGCAAAAAGAAAAAAGAAATCCTTCGAGACCCTTTTATTTCCCCCACCCACTGCCACCCATAAAGGAAAAGAAAAGAAAACCCTGGTTTCTTTTGTTTCATATCAACTGAAAGAGGTAAGGACTGCCCAATTTCACGAACCTTGGCTTTTCCCTTCTAATCTCCCTTTAGAGGAAGGCAAAAATCCATGCTAAATTAAGACAAAGTGCAGTACTAGGCGCTATAGGTGAAAAACATTGGATAAAGGGGCGATCAAGGGTTTCTTCATTCTTACTGGAGTATGATGGCAAATACATTGGATAGGTTGGACCTATTTATAGTGAGAACTCCAAAAAAGAAACAGTAGGGTTTCTGTATCAGTGTGGCGGAAGGGAAAGGTTTGGGGGCATGGAACTTAATTTGATAGGTAATTTATGGGAAAGGCTCATTTTGGGTGAGGTGAAAACTTCTGATAGTTTTCTACAAAGGTAATGAGGTGACTTGTGAGGGGACTAAGGGCTTGAGGAATAAGGGAATCAGTTACTTGAATCCGGTTGTGCTCATTCTCCGAGAGATGAAGTTTGAACTTGGAAGTACTAGATAAAATGGATGGTAATGTCTCATGGAATTTAAACTATAGGTTGAATGGAGATTTATCAAGTCTTGTAGTTGTTCGCAAGGAATTTAATTGTGTGGGGATAAAAATATGATTTTGTTTCTTTAATGTTATGAGAGGACATCGAAATTTTCAATTGAGTGATTGGGGCATCCTTGATTCCTTAGTAAATGGCTCGTTGGGGTTATTGGTTAGGGTTTCAAGAATAAATGGTTTCTTTTACCATGTTATAAGGAGCATTGGAACATACAAAGGCCTTTTCTGTGTGGATATTGGATAGTAAGATGTTACTGTTTAAGGGTAACTTCTACACCTTAAGATTGTTATGGGAGAACTTGGCTTCTTCTATGTATATGTAATTTATCATTTGTTTTCCTTCGGTTTAGTATCATACCTATATGTGCAGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATTGCACTTTCCGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTTCTGCTGCTGGTGGACCGGGTGGAGCAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACTGAAGATAACCTTCGTCAGGTTTGTAAATGTCATGGGACATGATACAATTGTTACACAGTACAAATAGTTCTTGGTGGCTTATGATATCTTGAATCAACTCTTTTATTTTAATTGCCATGTTCTGCAAAATTCAGTGTTTCTTTTCGTCTATTGTTAAAACGTTGACATTGTACTATTATAAGACGACCCTTCCTCTACTTCCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTCCAGATGCCCTTGATGAATCTGGCCATTGCAAGGGTTTTGGTTTTATTCAGGTAATACATCTAGAGATTATTTTATTCTTTGAGAAGGGCACAGTAATGTTAGGGCATAAGCCTAATCAGAACTGTTTGGCTGCAGTTCACACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACGATAAAGGTGATGCATATTTCATGTGCATGTATTCTTATGTGCTAATTTTTTGCTAGCATGCTTTGTATGCTCTTTTCCATGGTGTTGAATAGCAGTCAAATGCTAATCTCCTAATCGTGGGAGTCTTCTTCTGATTTATAAGGATTGAGAGTTCTTCAATGGAGTGAATTGGCATGTAAAGGGACAGCAGGGGGTATTCGGATGGAGTGGAATAGTGCAGAGTTAGGAGCTATGAAGTTTAGGGAGTGGCGAACTCCTGGGGCCCATAGGCTAAGGAGCTGATAAGATAAAAAAATGATGTTTTTAGTAGTGGGATCACTAACTCCTTTGGCCAAACACATCCCAGTTTAATCTTTTAATTTGAAGAGCTTTGAGGGTAAGTTTGTTGCCATTTTCTAATGCATTTTACATTCTTCTCCAAAAAAAAGTGGGCCTTTCGTTAAGTGTTTAGGTTGTTGCATCTTGTACCTGACAAATAGACAAGGTGTAGACTTAGAAGGTTTTGATGCTTCAATTTTCAAGGGATGCAAATGCTCTAATCTCGTTGTGAACTTCTTCGTTTTCTCCTTCTAGGGAGAGATCTTGTAGGTTCTGATTACTCAAATTTTCAAGGTTGCATACACCCAAATCTTGCCGTCTTCTTCTTTTTCGTCTTTGTCACGCTGTCTTCTTCTTCTTCGGTTATCTGATTAAGCAATATTGAAGTTTTCTCGCTGTGGGTGTTAGGTTTGATTACTGACAAGTTGATAGCACGTAGGGAGCAACATTTAGTATTCTAATACAAAAAATTATATTGTTGAAAGAGAAGTGGAAAGTAACAAAAAGATAGGCAGCCAAAAAGCTAGTACAAATATGGCGAGGTTTTCTTTAAATGCTCTTTTCACTAAATAATAGTAAAATATGTTGATTGGTTTTTTCGGTGCTTTGGAAGATTAAGATTTCAAGAAAAGTAAAATTCTTTACGTAGCAAGTTTTACATGGTCATGCTAATGCGATGGGTCGTCTTGTGTGGAAGTTGCCCTCGCTTGTTGGCTCATTTTGTTGTATTCTTTATCAGAAGGCGGAGGAAGACATGGATCATATTCTTGGGCACTGTGACTTCACGAGAGCTGTGGGATGAATTTTTCCAAATGTTTGGTTTCTCGAATGCACGTCATAGGGTTACTAGTGATATGATCAGTGAGTTCCTCCTCTTTTTAGGAGAAAGGGTGTTTTTAATGGATGGCTGGGGCGTATGCTGTTCTTTGGGTCCTATGGGGGAAACAGAATATCAGGATGTTTCGAGCGTTAGAGAGACTCAAATATATATACATAAATACATATATGTATGTATATGTTTTCTACCTTGTTAGATACCATATTTCTCATAATATTTTGTTATCTTCTTATACAGGTGTCTACAGTCACAGATCAGCCTGGTTTGCAAGATGTTGGAGCAAGTACAGGAGACCTTGATGAGGAAGACGGCGGTGGCTTGGTAAATAAATCTTTTGTCTTTGTTCCTCTCTGTCTGTCTAATAAATGAAGCATAATTATGTTGCATCTTAAAGAATCACCAAGAAAGTTCAGTGAGTTGACGGATTTATTTCATGTTGTAATAGTTTCTCATCCATTGCTTCTATTACCGTTTGAAACTTGGAAGAATAAATTCGTATTTGTTTCTTTGTTTTTCGTCCTTTCTGCTTTATTAATGTTTATTATACCCAAATTCGTGGACATCATCCGTCAAAAAGTATGCCTCTCAGCTCTTTCTTACTCCATTTTCTTTATTTTTTTTTAAATATCATTTCATTTGTTTAGTCGTTCTTATTATTTGAATGGACCATTAGAGAATCAAGGTTGGTCTTTCTATCTTGGTGTGTGTTATTTTTGTATTTTTATTTTAACATAAAGTTCTATTCTTATTTCTTAGAGAAATATTTAAGTAAACACAGTCTTCCCCTCCCCCCCCCCACCCCCCTCACTTTTTAAATCCATGCTCGTCTCAAGGGCCAAGCATCAGAGATATCAAGAGTATTTTTGGTTTTTTTTAACACACAGTTCTATTCTGAGAGAAATATTTAAGGTAACAAAGTTCGATCTTTTTTAGCTTGTGCCTGCACGTGGGCCAAGCTTTAGAGATATTAAGGATATAAGCGTCTTCATTTTGAGCTCACCTGAAGGTTCAAACATGCAGACCTTTGGACAAGTGTTTGTCAAAGATTGAGTGCTTAGCCTAATGGGGCGCCTCTTATGGGGCTCAAGTTGTCCAACTTGATTTTTTTGTTTACACTACTTTCACAGGCTTCGTGATTTATTTATGGTCGTTGGCCACGGTAATATTAGTTACCCTTTTTTCTTTCTTTCTTTGGGAAGTGTATTTTAAACCTCATAATGTAAAAACTTACGAGGTAACTTGTGATAGTAACTACTTTCTATATTATCTATCCTCTTTACAGTTACACAAAAAGATTTTGAAAGTTTCTGGCTGAAACCTTTGACAAAGAGTTCTGTGTACTTTAGCCTCTACGTTAACAAATATGTTTCTAATTTTCAGTCTTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGCTGGACCGTACTGGTGCCGCATCTAGGTTTGTCTTTGTTGAGCTTATTATCATTTGGAAATTTCAATCAAAAAATTATCTGAAATTTGCATGTTGGTCTTATATCTGTTCTCTCTGCAGCATTGCTGGTTCTTTAGGTACACATGTTGTAAATAACACAGGTGCTACTATGCCCGCACCGATCCTTGGAGGTGCAACTATCCCATCCCTTGGTGTTGGTACTTCCTTGGCCGCCTTTCCTGCTTTTCCTGGACTTGGTGCAGGCGTTCAGGTTCCCCCGTCACTGCCAATTTACTTGGTGTTGGTACTCCAAGTGAATGTCTACTGTTGAAGAATATGTTTGATCCTACAGCTGAGGTATGCTGCAGCATTCTGAAGGTATATGTTAAATTTTCTGTTTATGTCTAAGTTTAACTTGTTACCCTTATGTTTGGCAGTCGGAACCAACTTTCGATCTGGATATCCGAGATGACGTTGAAGAGGAATGCTCTAGGTTTGGAAAATTGAAACATATATACGTTGACAAGTAAGTTTAGGACTTCGAGTTCATGAAGCTACTGCATATAGTTTCTAGGGCCAATTGCAAAACTAAACCCTTAGATATGGGGATAGTTGCAATTACATTCTCAAACGTCCATTTGTGAAAATTGAGCTCTCAAACTTATACAAGTATTAATATTGGACGTTCATACTTATAATATTTGTAGAAATTTGACCCTAAAACTTACGATGGTATGGTTGATAGATGCAATTACAACCTCAATTTCTTTTTTCTTTTCTGCATTTAGAGGTCAAATTTCTACTACTATTGTAAGTTTGAGGGTCCCATTTTAACACTTATATAAATTTAAGTGCTCAACTTTTACAATTAAAAATTCGAGAGCGTAATTGCAACTACCATCATACTCCAAGTGCAAATTTTGCAATTTGACCTAGTTTTTAATTCCTTCCCATTTCCTCAAACATTGTGTGTTCTTTATTTCTTTATGGACAGGAATAGCGCCGGTTTTGTATATTTGAGGTTTGAAAAGCCAGAGTCTGCAACTGAAGCCCAACGTGCCCTGAATGGAAGATGGTTTGCTGGGAAAATGATTGGTGCAACTTTCATGGTAAATCTTTGGTCGTTGTCTTTACCTTCATCTGATAGTACAATGTCACTAACTCTTTTATGGAATTTTGTTCGAATACCACATAACAAGAAAACTCAAGAATCATAAAGAACACTAAAAGATTAGAAATTAATATTGCAATACTAACGAAGAAACTACAATATACCATGGCCTTTCTTTGGAGAGGGCTACCTCCCTCATATTCCCCAAAGGAAATCAACAATTTTTTACCTATCAAGTCTCAACCCCACTCCCTCTACTTATAACTAAAAGCTCTAATGAACTTACTATCTATTTACTAATATGTTCCTTCTGATAGAGTGATGACCATTCTAATTATCCTGAAATTTCCTAATTAAGAGTCTTATAAATTTCTTACGAATCTTCAGGACATTCCAAGCTATGAAGCAAAATTTCCAGACAGCAGATAA

mRNA sequence

ATGGATTTTGACGAGTATGATTATTTGGAGAAAACAGTTGAAAACCCCGAGGGACAAAAAGTGAAGGAAACTGCCAATGGCGGTGATGGAGAAATGAAATCTGGAGATAAGCATTATAGTCGGAGTTCAAAATATAAGAGTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCGAAATCGGATGATGAGTCACGTGATCGAGACCGGCATAGAGATAGGACTTCTTCCCGTCATCGGTCTAGGTCCAGAGAGAGGGACCGTGATAAGCATCGAAGCTCCAAGGAAAATAGGGGAAAAGATGACAGAGAAGGGAATCGGGAAGAGAGAAGCAGTAAGGACAGGGATGTGGACAGAGATAAAGAACGTTCTCATGATCGAGATAGACGGGGTAGAGATGGTGAAAGGAATAGGGAAAGAGAACGATCACGTCGAAGTAGAAGTCGTTCAGAAAGACATCGCAGTGATCGTGACGATGGCATAAGAGAGAGGAGCCGAGATAATGAACTCAGAGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGAAGATATAAAGATAAAAAGGACGAAGCAGCTGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTACGAGTTCTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCACGGCGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATTGCACTTTCCGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTTCTGCTGCTGGTGGACCGGGTGGAGCAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACTGAAGATAACCTTCGTCAGACGACCCTTCCTCTACTTCCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTCCAGATGCCCTTGATGAATCTGGCCATTGCAAGGGTTTTGGTTTTATTCAGTTCACACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACGATAAAGGTGTCTACAGTCACAGATCAGCCTGGTTTGCAAGATGTTGGAGCAAGTACAGGAGACCTTGATGAGGAAGACGGCGGTGGCTTGTCTTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGCTGGACCGTACTGGTGCCGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTTGTAAATAACACAGGTGCTACTATGCCCGCACCGATCCTTGGAGGTGCAACTATCCCATCCCTTGGTGTTGGTACTTCCTTGGCCGCCTTTCCTGCTTTTCCTGGACTTGGTGCAGGCGTTCAGGTTCCCCCGTCACTGCCAATTTACTTGGTGTTGGTACTCCAATCGGAACCAACTTTCGATCTGGATATCCGAGATGACGTTGAAGAGGAATGCTCTAGGTTTGGAAAATTGAAACATATATACGTTGACAAGAATAGCGCCGGTTTTGTATATTTGAGGTTTGAAAAGCCAGAGTCTGCAACTGAAGCCCAACGTGCCCTGAATGGAAGATGGTTTGCTGGGAAAATGATTGGTGCAACTTTCATGGACATTCCAAGCTATGAAGCAAAATTTCCAGACAGCAGATAA

Coding sequence (CDS)

ATGGATTTTGACGAGTATGATTATTTGGAGAAAACAGTTGAAAACCCCGAGGGACAAAAAGTGAAGGAAACTGCCAATGGCGGTGATGGAGAAATGAAATCTGGAGATAAGCATTATAGTCGGAGTTCAAAATATAAGAGTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCGAAATCGGATGATGAGTCACGTGATCGAGACCGGCATAGAGATAGGACTTCTTCCCGTCATCGGTCTAGGTCCAGAGAGAGGGACCGTGATAAGCATCGAAGCTCCAAGGAAAATAGGGGAAAAGATGACAGAGAAGGGAATCGGGAAGAGAGAAGCAGTAAGGACAGGGATGTGGACAGAGATAAAGAACGTTCTCATGATCGAGATAGACGGGGTAGAGATGGTGAAAGGAATAGGGAAAGAGAACGATCACGTCGAAGTAGAAGTCGTTCAGAAAGACATCGCAGTGATCGTGACGATGGCATAAGAGAGAGGAGCCGAGATAATGAACTCAGAGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGAAGATATAAAGATAAAAAGGACGAAGCAGCTGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTACGAGTTCTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCACGGCGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATTGCACTTTCCGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTTCTGCTGCTGGTGGACCGGGTGGAGCAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACTGAAGATAACCTTCGTCAGACGACCCTTCCTCTACTTCCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTCCAGATGCCCTTGATGAATCTGGCCATTGCAAGGGTTTTGGTTTTATTCAGTTCACACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACGATAAAGGTGTCTACAGTCACAGATCAGCCTGGTTTGCAAGATGTTGGAGCAAGTACAGGAGACCTTGATGAGGAAGACGGCGGTGGCTTGTCTTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGCTGGACCGTACTGGTGCCGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTTGTAAATAACACAGGTGCTACTATGCCCGCACCGATCCTTGGAGGTGCAACTATCCCATCCCTTGGTGTTGGTACTTCCTTGGCCGCCTTTCCTGCTTTTCCTGGACTTGGTGCAGGCGTTCAGGTTCCCCCGTCACTGCCAATTTACTTGGTGTTGGTACTCCAATCGGAACCAACTTTCGATCTGGATATCCGAGATGACGTTGAAGAGGAATGCTCTAGGTTTGGAAAATTGAAACATATATACGTTGACAAGAATAGCGCCGGTTTTGTATATTTGAGGTTTGAAAAGCCAGAGTCTGCAACTGAAGCCCAACGTGCCCTGAATGGAAGATGGTTTGCTGGGAAAATGATTGGTGCAACTTTCATGGACATTCCAAGCTATGAAGCAAAATTTCCAGACAGCAGATAA

Protein sequence

MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRSKSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKGFGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFPAFPGLGAGVQVPPSLPIYLVLVLQSEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR

Homology

[Close]

BLAST of IVF0017989 vs. ExPASy Swiss-Prot
Match: Q5RC80 (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.0e-49
Identity = 195/528 (36.93%), Postives = 272/528 (51.52%), Query Frame = 0


Query: 69  RDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDRDKERSHDR 128
           +D ++  +++ H  RS++R + K RS    R    R  ++E + S+DR  +R K +S +R
Sbjct: 17  KDENKLSSANGHEERSKKRKKSKSRSRSHER---KRSKSKERKRSRDR--ERKKSKSRER 76

Query: 129 DRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGR 188
            +R R  ER R R RSR  R R  R+RS         +   ++      + SR R R   
Sbjct: 77  -KRSRSKERRRSRSRSRDRRFRG-RYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKS 136

Query: 189 RYKDKKDEAAEP---EADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRN 248
            ++  K    EP       ERD RTVF  Q++ +   RD+ EFFS  GKVRDVR+I DRN
Sbjct: 137 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 196

Query: 249 SRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMG 308
           SRRSKG+ YVEFVD  SVP+AI L+GQ +L  P++V+ S+AEKN+      A      + 
Sbjct: 197 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR------AAAMANNLQ 256

Query: 309 PYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALD-ESGHCKGFGFI 368
             S G  RLYVG+LH NITED LR         F  F    +    +D E+G  KG+GFI
Sbjct: 257 KGSAGPMRLYVGSLHFNITEDMLRGI-------FEPFGRIESIQLMMDSETGRSKGYGFI 316

Query: 369 QFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASS 428
            F+  E A+ AL      E+AGR +KV  VT++       +S  D DE +  G+ L  + 
Sbjct: 317 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDLGTTG 376

Query: 429 RASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLG-VGTSLAAFPAFP 488
           R  LM +L           + GT +     A     + G     ++  + T L+      
Sbjct: 377 RLQLMARL-----------AEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEAS 436

Query: 489 GLGAGVQVPP------SLPIYLVLVLQSEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSA 548
            L A   V P       L        + E  +D +I+DDV EEC++ G + HIYVDKNSA
Sbjct: 437 ALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA 496

Query: 549 -GFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 585
            G VY++     +A  A  AL+GRWFAGKMI A ++ +P+Y   FPDS
Sbjct: 497 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 512

[Close]

BLAST of IVF0017989 vs. ExPASy Swiss-Prot
Match: Q8VH51 (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 8.8e-49
Identity = 195/528 (36.93%), Postives = 275/528 (52.08%), Query Frame = 0


Query: 69  RDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDRDKERSHDR 128
           +D ++  +++ H  RS++R + K RS    R    R  ++E + S+DR  +R K +S +R
Sbjct: 17  KDENKLNSANGHEERSKKRKKSKSRSRSHER---KRSKSKERKRSRDR--ERKKSKSRER 76

Query: 129 DRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGR 188
            +R R  ER R R RSR  R R  R+RS         +   ++      + SR R R   
Sbjct: 77  -KRSRSKERRRSRSRSRDRRFRG-RYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKS 136

Query: 189 RYKDKKDEAAEP---EADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRN 248
            ++  K    EP       ERD RTVF  Q++ +   RD+ EFFS  GKVRDVR+I DRN
Sbjct: 137 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 196

Query: 249 SRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMG 308
           SRRSKG+ YVEFVD  SVP+AI L+GQ +L  P++V+ S+AEKN+      A      + 
Sbjct: 197 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR------AAAMANNLQ 256

Query: 309 PYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALD-ESGHCKGFGFI 368
             S G  RLYVG+LH NITED LR         F  F    +    +D E+G  KG+GFI
Sbjct: 257 KGSAGPMRLYVGSLHFNITEDMLRGI-------FEPFGRIESIQLMMDSETGRSKGYGFI 316

Query: 369 QFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASS 428
            F+  E A+ AL      E+AGR +KV  VT++       +S  D DE +  G+ L  + 
Sbjct: 317 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDLGTTG 376

Query: 429 RASLMQKL-DRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFPAFP 488
           R  LM +L + TG     A       +  +G+     +   + +  + + T L+      
Sbjct: 377 RLQLMARLAEGTGLQIPPAAQ---QALQMSGSLAFGAVAEFSFV--IDLQTRLSQQTEAS 436

Query: 489 GLGAGVQVPP------SLPIYLVLVLQSEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSA 548
            L A   V P       L        + E  +D +I+DDV EEC++ G + HIYVDKNSA
Sbjct: 437 ALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA 496

Query: 549 -GFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 585
            G VY++     +A  A  AL+GRWFAGKMI A ++ +P+Y   FPDS
Sbjct: 497 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 518

[Close]

BLAST of IVF0017989 vs. ExPASy Swiss-Prot
Match: Q14498 (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-48
Identity = 195/528 (36.93%), Postives = 275/528 (52.08%), Query Frame = 0


Query: 69  RDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDRDKERSHDR 128
           +D ++  +++ H  RS++R + K RS    R    R  ++E + S+DR  +R K +S +R
Sbjct: 17  KDENKLSSANGHEERSKKRKKSKSRSRSHER---KRSKSKERKRSRDR--ERKKSKSRER 76

Query: 129 DRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGR 188
            +R R  ER R R RSR  R R  R+RS         +   ++      + SR R R   
Sbjct: 77  -KRSRSKERRRSRSRSRDRRFRG-RYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKS 136

Query: 189 RYKDKKDEAAEP---EADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRN 248
            ++  K    EP       ERD RTVF  Q++ +   RD+ EFFS  GKVRDVR+I DRN
Sbjct: 137 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 196

Query: 249 SRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMG 308
           SRRSKG+ YVEFVD  SVP+AI L+GQ +L  P++V+ S+AEKN+      A      + 
Sbjct: 197 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR------AAAMANNLQ 256

Query: 309 PYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALD-ESGHCKGFGFI 368
             S G  RLYVG+LH NITED LR         F  F    +    +D E+G  KG+GFI
Sbjct: 257 KGSAGPMRLYVGSLHFNITEDMLRGI-------FEPFGRIESIQLMMDSETGRSKGYGFI 316

Query: 369 QFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASS 428
            F+  E A+ AL      E+AGR +KV  VT++       +S  D DE +  G+ L  + 
Sbjct: 317 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDLGTTG 376

Query: 429 RASLMQKL-DRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFPAFP 488
           R  LM +L + TG     A       +  +G+     +   + +  + + T L+      
Sbjct: 377 RLQLMARLAEGTGLQIPPAAQ---QALQMSGSLAFGAVAEFSFV--IDLQTRLSQQTEAS 436

Query: 489 GLGAGVQVPP------SLPIYLVLVLQSEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSA 548
            L A   V P       L        + E  +D +I+DDV EEC++ G + HIYVDKNSA
Sbjct: 437 ALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA 496

Query: 549 -GFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 585
            G VY++     +A  A  AL+GRWFAGKMI A ++ +P+Y   FPDS
Sbjct: 497 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 518

[Close]

BLAST of IVF0017989 vs. ExPASy Swiss-Prot
Match: Q86U06 (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-27
Identity = 151/433 (34.87%), Postives = 214/433 (49.42%), Query Frame = 0


Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           K +DE + ++  +D  S+   S S         S  E  G        +++ S+  +  R
Sbjct: 20  KEEDEQQRKEVKKDYPSNTTSSTS--------NSGNETSGSSTIGETSKKKRSRSHNKSR 79

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRS---DRDDGIRERSRDNELREREKE 180
           D++RS  RDR     +R R R    RS  R  RHRS   DR  G   RSRD+   +R   
Sbjct: 80  DRKRSRSRDR-----DRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHY 139

Query: 181 RE-----SRERGRDGRRYKDKKDEAAEPE---ADPERDQRTVFAYQISLKATERDVYEFF 240
           R          G     +  +K    EP    +  ERD RTVF  Q++ +   RD+ +FF
Sbjct: 140 RSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFF 199

Query: 241 SRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKN 300
           S  GKVRDVR+I DRNSRRSKG+ YVEF +  SVP+AI L+GQ LL  P++V+ S+AEKN
Sbjct: 200 SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN 259

Query: 301 QVQSTSAAGGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGP 360
           ++ + +     G      +GG  RLYVG+LH NITED LR    P    F    +     
Sbjct: 260 RLAAMANNLQKG------NGGPMRLYVGSLHFNITEDMLRGIFEP----FGKIDNIVLMK 319

Query: 361 DALDESGHCKGFGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQ-PGLQDVGASTG 420
           D+  ++G  KG+GFI F+  E AR AL      E+AGR ++V  VT++  G  D+    G
Sbjct: 320 DS--DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDG 379

Query: 421 DLDEE---DGGGLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGA 479
           D + +    GG   L A        +L  T AA++ A +    +  N    +P   L  A
Sbjct: 380 DQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLN--GAVPLGALNPA 425

[Close]

BLAST of IVF0017989 vs. ExPASy Swiss-Prot
Match: O13845 (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-24
Identity = 160/556 (28.78%), Postives = 248/556 (44.60%), Query Frame = 0


Query: 39  YSRSSKYKSDGKDDGEHRSKRSKSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKEN 98
           Y+RSSK     +D G        +DD   +   HR   + RH  RS     D    S   
Sbjct: 84  YARSSKQSFQREDSG-------YNDDVVTNSSSHR---TPRHHRRSYSPRSDYGSRSPSP 143

Query: 99  RGKDDREGNREERSSKDRDVDRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDR 158
               D   +R    S+DRD      RS     R R    +  R     SR    R R + 
Sbjct: 144 HSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEE 203

Query: 159 DDGIRERSRDNELREREKERESRERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISL 218
                 R+ D +  +   +  S ER R   R +++  + +E     ERD+RTVF  Q++ 
Sbjct: 204 RSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLSE----EERDRRTVFVSQLAN 263

Query: 219 KATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQP 278
           + T R++Y+FF +AG VRD +++ D+ S RSKGV YVEF    SV  AIALSG+ LL  P
Sbjct: 264 RLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLP 323

Query: 279 VMVKPSEAEKN-QVQSTSAAGGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLP 338
           V+V+ +EAEKN + +  +       A  P+     RL V N+H N+T+++++    P   
Sbjct: 324 VIVQLTEAEKNRKAREAAELARAASAEIPF----HRLCVSNIHFNLTDEDVKAIFEPF-- 383

Query: 339 GFWSFWHCGTGPDALDESGHCKGFGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQ 398
           G   F H        D+    KGFG+IQ+     ARNAL      ++AGR ++V    D+
Sbjct: 384 GDIEFVHL-----QRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 443

Query: 399 PGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTGAASSI-------AGSLGTHVV 458
              +   +     DE           +R    Q   R G +S+        A  L     
Sbjct: 444 FTTETTSSMLKRFDE---------TLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEE 503

Query: 459 NNTGATMPAPILGGATIPSLGVGTSLAAFPAFPGLGAGVQVPPSLPIYLVLVLQSEPTFD 518
            +   T    +   A    +   + L + P  P + +   +   L        ++ P + 
Sbjct: 504 ESRPITRDELMKKLARSEDISDNSKLVSEPE-PPIRSRCAL---LENMFNPAEETSPNWV 563

Query: 519 LDIRDDVEEEC-SRFGKLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGA 578
            ++  DV+EEC  ++GK+ HI V  N  G ++++FE  + A +A   L+ RWF G+ I A
Sbjct: 564 QELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKA 601

Query: 579 TFMDIPSYEAKFPDSR 586
           + +    Y  KFP+++
Sbjct: 624 SILPETDYYFKFPNAK 601

[Close]

BLAST of IVF0017989 vs. ExPASy TrEMBL
Match: A0A1S3BIJ5 (RNA-binding protein 39 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 SV=1)

HSP 1 Score: 991.5 bits (2562), Expect = 1.5e-285
Identity = 556/600 (92.67%), Postives = 560/600 (93.33%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRS KYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSLKYKSDGKDDGEHRSKRS 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES
Sbjct: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GGAMGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         LDESGHCKG
Sbjct: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPLDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL
Sbjct: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480
           NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP
Sbjct: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480

Query: 481 AFPGLGAGVQVPP--------SLPIYLVLV-------LQSEPTFDLDIRDDVEEECSRFG 540
           AFPGLGAGVQVPP          P   +L+        +SEPTFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFG 540

Query: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 586
           KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of IVF0017989 vs. ExPASy TrEMBL
Match: A0A1S3BJ70 (RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 SV=1)

HSP 1 Score: 985.7 bits (2547), Expect = 8.2e-284
Identity = 555/600 (92.50%), Postives = 559/600 (93.17%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRS KYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSLKYKSDGKDDGEHRSKRS 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES
Sbjct: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDG RYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDG-RYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GGAMGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         LDESGHCKG
Sbjct: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPLDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL
Sbjct: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480
           NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP
Sbjct: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480

Query: 481 AFPGLGAGVQVPP--------SLPIYLVLV-------LQSEPTFDLDIRDDVEEECSRFG 540
           AFPGLGAGVQVPP          P   +L+        +SEPTFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFG 540

Query: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 586
           KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 592

[Close]

BLAST of IVF0017989 vs. ExPASy TrEMBL
Match: A0A0A0K4Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014530 PE=4 SV=1)

HSP 1 Score: 971.8 bits (2511), Expect = 1.2e-279
Identity = 545/600 (90.83%), Postives = 555/600 (92.50%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKH+SRSSKYKSDGKDDGEHRSK  
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGEHRSKHL 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KSDDESRDRDRHRDRTSSRHRSRSRERDRD+HRSSKENRGK+DREGNREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNREERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERE+SRRSRSRSERHRSDRDDGIRERSRDNELREREKERES
Sbjct: 121 DKERSHDRDRRGRDGERNREREQSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGRRYKDKKDE AEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDGRRYKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GGAMGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         +DESGHCKG
Sbjct: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPVDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL
Sbjct: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480
           NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSL VGTSLAAFP
Sbjct: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLSVGTSLAAFP 480

Query: 481 AFPGLGAGVQVPP--------SLPIYLVLV-------LQSEPTFDLDIRDDVEEECSRFG 540
           AFPGLGAGVQVPP          P   +L+        +SEPTFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFG 540

Query: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 586
           KLKHIYVD+NSAGFVYLRFEK ESA EAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLKHIYVDRNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of IVF0017989 vs. ExPASy TrEMBL
Match: A0A6J1HYU3 (RNA-binding protein 39 OS=Cucurbita maxima OX=3661 GN=LOC111468152 PE=4 SV=1)

HSP 1 Score: 877.1 bits (2265), Expect = 4.1e-251
Identity = 500/602 (83.06%), Postives = 529/602 (87.87%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGD EMKSGDKH SRSSKYK+DGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRS 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KS+DES D DRHRDRTSSRHRSRSR+RDRD+H S KE RGK+DRE N+EERSSKDRDVDR
Sbjct: 61  KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKER HD DRRGRDGE++RERERS RSRS SERHRSDRD+ +R+R+RDNE REREKERES
Sbjct: 121 DKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESMRQRTRDNEFREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGRR+K+KK++  EPEADPERDQRTVFAYQISLKATERDV+EFFSRAGKVRDVRL
Sbjct: 181 RERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQ QSTSAA GP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GG MGPY+GGARRLYVGNLHPNITEDNLRQ        F +F         LDESGHCKG
Sbjct: 301 GGVMGPYTGGARRLYVGNLHPNITEDNLRQV-------FGAFGIVELVQMPLDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQF+RLEDARNALSLNGQLEIAGR IKVSTVTDQPGLQD+GASTGDLD+EDG GLSL
Sbjct: 361 FGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMP-APILGGATIPSLGVGTSLAAF 480
           NASSRASLMQKLDRTG ASSIAGSLGTHVVNNTGATMP APILG  TIPSLGV TSL + 
Sbjct: 421 NASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMPMAPILGVGTIPSLGVATSLVSV 480

Query: 481 PAFPGLG-AGVQVP-----------PSLPIYLVLVL----QSEPTFDLDIRDDVEEECSR 540
           PAFPGLG AGVQVP           PS  + L  +     + EPTFD+DIRDDVEEECSR
Sbjct: 481 PAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSR 540

Query: 541 FGKLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPD 586
           FGKLKHIYVDKNSAGFVYLRF   E+A +AQRALNGRWFAGKMIGATFMDIPSYEAKFPD
Sbjct: 541 FGKLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPD 595

[Close]

BLAST of IVF0017989 vs. ExPASy TrEMBL
Match: A0A6J1GM48 (RNA-binding protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111455622 PE=4 SV=1)

HSP 1 Score: 875.2 bits (2260), Expect = 1.6e-250
Identity = 500/602 (83.06%), Postives = 528/602 (87.71%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGD EMKSGDKH SRSSKYK+DGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRS 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KS+DES D DRHRDRTSSRHRSRSR+RDRD+H S KE RGK+DRE N+EERSSKDRDVDR
Sbjct: 61  KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKER HD DRRGRDGE++RERERS RSRS SERHRSDRD+ IR+R+RDNE REREKERES
Sbjct: 121 DKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGRR+K+KK++  EPEADPERDQRTVFAYQISLKATERDV+EFFSRAGKVRDVRL
Sbjct: 181 RERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQ QSTSAA GP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GG MGPY+GGARRLYVGNLHPNITEDNLRQ        F +F         LDESGHCKG
Sbjct: 301 GGVMGPYTGGARRLYVGNLHPNITEDNLRQV-------FGAFGIVELVQMPLDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQF+RLEDARNALSLNGQLEIAGR IKVSTVTDQPGLQD+GASTGDLD+EDG GLSL
Sbjct: 361 FGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMP-APILGGATIPSLGVGTSLAAF 480
           NASSRASLMQKLDRTG ASSIAGSLGTHVVNNTGATM  APILG  TIPSLGV TSL + 
Sbjct: 421 NASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSV 480

Query: 481 PAFPGLG-AGVQVP-----------PSLPIYLVLVL----QSEPTFDLDIRDDVEEECSR 540
           PAFPGLG AGVQVP           PS  + L  +     + EPTFD+DIRDDVEEECSR
Sbjct: 481 PAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSR 540

Query: 541 FGKLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPD 586
           FGKLKHIYVDKNSAGFVYLRF   E+A +AQRALNGRWFAGKMIGATFMDIPSYEAKFPD
Sbjct: 541 FGKLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPD 595

[Close]

BLAST of IVF0017989 vs. NCBI nr
Match: XP_008447936.1 (PREDICTED: RNA-binding protein 39 isoform X1 [Cucumis melo] >XP_016900486.1 PREDICTED: RNA-binding protein 39 isoform X1 [Cucumis melo])

HSP 1 Score: 991 bits (2562), Expect = 0.0
Identity = 556/600 (92.67%), Postives = 560/600 (93.33%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRS KYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSLKYKSDGKDDGEHRSKRS 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES
Sbjct: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GGAMGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         LDESGHCKG
Sbjct: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPLDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL
Sbjct: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480
           NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP
Sbjct: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480

Query: 481 AFPGLGAGVQVPP--------SLPIYLVLV-------LQSEPTFDLDIRDDVEEECSRFG 540
           AFPGLGAGVQVPP          P   +L+        +SEPTFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFG 540

Query: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 585
           KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of IVF0017989 vs. NCBI nr
Match: XP_008447937.1 (PREDICTED: RNA-binding protein 39 isoform X2 [Cucumis melo])

HSP 1 Score: 985 bits (2547), Expect = 0.0
Identity = 555/600 (92.50%), Postives = 559/600 (93.17%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRS KYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSLKYKSDGKDDGEHRSKRS 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES
Sbjct: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGR YKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDGR-YKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GGAMGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         LDESGHCKG
Sbjct: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPLDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL
Sbjct: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480
           NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP
Sbjct: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480

Query: 481 AFPGLGAGVQVPP--------SLPIYLVLV-------LQSEPTFDLDIRDDVEEECSRFG 540
           AFPGLGAGVQVPP          P   +L+        +SEPTFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFG 540

Query: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 585
           KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 592

[Close]

BLAST of IVF0017989 vs. NCBI nr
Match: XP_011658601.1 (RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744308.1 RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744309.1 RNA-binding protein 39 isoform X1 [Cucumis sativus] >KGN43267.1 hypothetical protein Csa_020331 [Cucumis sativus])

HSP 1 Score: 971 bits (2511), Expect = 0.0
Identity = 545/600 (90.83%), Postives = 555/600 (92.50%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKH+SRSSKYKSDGKDDGEHRSK  
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGEHRSKHL 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KSDDESRDRDRHRDRTSSRHRSRSRERDRD+HRSSKENRGK+DREGNREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNREERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERE+SRRSRSRSERHRSDRDDGIRERSRDNELREREKERES
Sbjct: 121 DKERSHDRDRRGRDGERNREREQSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGRRYKDKKDE AEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDGRRYKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GGAMGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         +DESGHCKG
Sbjct: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPVDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL
Sbjct: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480
           NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSL VGTSLAAFP
Sbjct: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLSVGTSLAAFP 480

Query: 481 AFPGLGAGVQVPP--------SLPIYLVLV-------LQSEPTFDLDIRDDVEEECSRFG 540
           AFPGLGAGVQVPP          P   +L+        +SEPTFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFG 540

Query: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 585
           KLKHIYVD+NSAGFVYLRFEK ESA EAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLKHIYVDRNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of IVF0017989 vs. NCBI nr
Match: XP_011658603.1 (RNA-binding protein 39 isoform X2 [Cucumis sativus])

HSP 1 Score: 966 bits (2496), Expect = 0.0
Identity = 544/600 (90.67%), Postives = 554/600 (92.33%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKH+SRSSKYKSDGKDDGEHRSK  
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGEHRSKHL 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KSDDESRDRDRHRDRTSSRHRSRSRERDRD+HRSSKENRGK+DREGNREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNREERSSKDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERE+SRRSRSRSERHRSDRDDGIRERSRDNELREREKERES
Sbjct: 121 DKERSHDRDRRGRDGERNREREQSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGR YKDKKDE AEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDGR-YKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GGAMGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         +DESGHCKG
Sbjct: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPVDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL
Sbjct: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLGVGTSLAAFP 480
           NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSL VGTSLAAFP
Sbjct: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGGATIPSLSVGTSLAAFP 480

Query: 481 AFPGLGAGVQVPP--------SLPIYLVLV-------LQSEPTFDLDIRDDVEEECSRFG 540
           AFPGLGAGVQVPP          P   +L+        +SEPTFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFG 540

Query: 541 KLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 585
           KLKHIYVD+NSAGFVYLRFEK ESA EAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLKHIYVDRNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 592

[Close]

BLAST of IVF0017989 vs. NCBI nr
Match: XP_038887515.1 (RNA-binding protein 39-like isoform X2 [Benincasa hispida])

HSP 1 Score: 924 bits (2389), Expect = 0.0
Identity = 525/601 (87.35%), Postives = 543/601 (90.35%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGD +MKSGDKH SRSSKYKSD KDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDADMKSGDKHRSRSSKYKSDSKDDGEHRSKRS 60

Query: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDR 120
           KS+DESRD+DRHRDR    HRSR  ERDRD+HRSSKENRGK+DREGN EERSS+DRDVDR
Sbjct: 61  KSEDESRDQDRHRDR----HRSRFGERDRDRHRSSKENRGKEDREGNHEERSSRDRDVDR 120

Query: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERES 180
           DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRD+GIRERSRDNELRERE+ERES
Sbjct: 121 DKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDEGIRERSRDNELRERERERES 180

Query: 181 RERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240
           RERGRDGRRYKDKK+EAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL
Sbjct: 181 RERGRDGRRYKDKKEEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRL 240

Query: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGP 300
           IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQST+AAGGP
Sbjct: 241 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTAAAGGP 300

Query: 301 GGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKG 360
           GG MGPYSGGARRLYVGNLHPNITEDNLRQ        F +F         LDESGHCKG
Sbjct: 301 GGVMGPYSGGARRLYVGNLHPNITEDNLRQV-------FGAFGTVELVQMPLDESGHCKG 360

Query: 361 FGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSL 420
           FGFIQF+RLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQD+GA+TGDLD+EDGGGLSL
Sbjct: 361 FGFIQFSRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDIGANTGDLDDEDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMP-APILGGATIPSLGVGTSLAAF 480
           NASSRASLMQKLDRT AASSIAGSLGTHVVNNTGA MP APILGGATIPSL VGTSLAAF
Sbjct: 421 NASSRASLMQKLDRTRAASSIAGSLGTHVVNNTGAAMPMAPILGGATIPSLAVGTSLAAF 480

Query: 481 PAFPGLGAGVQVP-----------PSLPIYLVLVL----QSEPTFDLDIRDDVEEECSRF 540
           PAFPGLGAGV VP           PS  + L  +     +SEPTFDLDIRDDVEEECSRF
Sbjct: 481 PAFPGLGAGVHVPAVAASLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRF 540

Query: 541 GKLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 585
           GKLKHIYVDKNSAGFVYLRFEK ESA EAQRALNGRWFAGKMIGATFMDIPSYE KFPDS
Sbjct: 541 GKLKHIYVDKNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEVKFPDS 590

[Close]

BLAST of IVF0017989 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 536.2 bits (1380), Expect = 3.3e-152
Identity = 353/607 (58.15%), Postives = 424/607 (69.85%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETAN-GGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKR 60
           MDFDEY+YLEKTVENP  +   E  N GGD ++KS  K  SRSS+          HR  +
Sbjct: 1   MDFDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDK 60

Query: 61  SKSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKD-DREGNREERSSKDRDV 120
            K  DE  D  R   R+ S HRSRSR+R+RD+HRSS+E+R +D +++ ++EER+ KDR+ 
Sbjct: 61  KKERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRER 120

Query: 121 DRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKER 180
           DRDK    DRD +GRD     E++RSRRSRSRSERHRS        + R+  L    KER
Sbjct: 121 DRDK----DRDSKGRD----HEKDRSRRSRSRSERHRS--------QEREKSLEIEPKER 180

Query: 181 ESRERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDV 240
           E+++R RD RR+KDKK++  EPEADPERDQRTVFAYQI+L+ATERDVYEFFSRAGKVRDV
Sbjct: 181 ETKDRDRDRRRHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDV 240

Query: 241 RLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAG 300
           R+IMDR SRRS+G+GYVEF D MSVPMAIALSGQ LL QPVMVKPSEAEKN VQST+AA 
Sbjct: 241 RIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAA 300

Query: 301 GPGGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHC 360
           G GG +GPYSGGARRLYVGNLH N++ED+LR+        F SF          DE+G C
Sbjct: 301 GAGGMLGPYSGGARRLYVGNLHINMSEDDLRKV-------FESFGSVELVQVPRDETGLC 360

Query: 361 KGFGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVG--ASTGDLDEEDGG 420
           KGFGF+QF RLEDARNAL+LNGQLEIAGR IKVS VTDQ  + + G   +TGDLD++DGG
Sbjct: 361 KGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGG 420

Query: 421 GLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGG-ATIPSLGVGTS 480
           GLSLNA SRA LMQKLDR+G ASS            TG T  A   GG +TI SL     
Sbjct: 421 GLSLNAQSRALLMQKLDRSGTASS------------TGLTTAASFNGGVSTISSLAAPAL 480

Query: 481 L-AAFPAFPGLGAGVQVPPSLPIYL--------VLVL--------QSEPTFDLDIRDDVE 540
           +  +FPA  GL     +P  +P            L+L        ++E  FD DI++DV+
Sbjct: 481 VQGSFPAVAGLAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVK 540

Query: 541 EECSRFGKLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYE 586
           EECS+FGKL HI+VDKNS GFVYLRFE  ++A  AQRAL+GRWFAGKMI AT+M   +YE
Sbjct: 541 EECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYE 559

[Close]

BLAST of IVF0017989 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 513.1 bits (1320), Expect = 3.0e-145
Identity = 353/645 (54.73%), Postives = 424/645 (65.74%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETAN-GGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKR 60
           MDFDEY+YLEKTVENP  +   E  N GGD ++KS  K  SRSS+          HR  +
Sbjct: 1   MDFDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDK 60

Query: 61  SKSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKD-DREGNREERSSKDRDV 120
            K  DE  D  R   R+ S HRSRSR+R+RD+HRSS+E+R +D +++ ++EER+ KDR+ 
Sbjct: 61  KKERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRER 120

Query: 121 DRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKER 180
           DRDK    DRD +GRD     E++RSRRSRSRSERHRS        + R+  L    KER
Sbjct: 121 DRDK----DRDSKGRD----HEKDRSRRSRSRSERHRS--------QEREKSLEIEPKER 180

Query: 181 ESRERGRDGR-----------------------------RYKDKKDEAAEPEADPERDQR 240
           E+++R RD R                             R+KDKK++  EPEADPERDQR
Sbjct: 181 ETKDRDRDRRFILMLLGPLVLPSVQLDGALPCRDFSCFIRHKDKKEDKVEPEADPERDQR 240

Query: 241 TVFAYQISLKATERDVYEFFSRAGK---------VRDVRLIMDRNSRRSKGVGYVEFVDA 300
           TVFAYQI+L+ATERDVYEFFSRAGK         VRDVR+IMDR SRRS+G+GYVEF D 
Sbjct: 241 TVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEFYDT 300

Query: 301 MSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSGGARRLYVGNLH 360
           MSVPMAIALSGQ LL QPVMVKPSEAEKN VQST+AA G GG +GPYSGGARRLYVGNLH
Sbjct: 301 MSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLH 360

Query: 361 PNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKGFGFIQFTRLEDARNALSLNG 420
            N++ED+LR+        F SF          DE+G CKGFGF+QF RLEDARNAL+LNG
Sbjct: 361 INMSEDDLRKV-------FESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNG 420

Query: 421 QLEIAGRTIKVSTVTDQPGLQDVG--ASTGDLDEEDGGGLSLNASSRASLMQKLDRTGAA 480
           QLEIAGR IKVS VTDQ  + + G   +TGDLD++DGGGLSLNA SRA LMQKLDR+G A
Sbjct: 421 QLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTA 480

Query: 481 SSIAGSLGTHVVNNTGATMPAPILGG-ATIPSLGVGTSL-AAFPAFPGLGAGVQVPPSLP 540
           SS            TG T  A   GG +TI SL     +  +FPA  GL     +P  +P
Sbjct: 481 SS------------TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIP 540

Query: 541 IYL--------VLVL--------QSEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFV 586
                       L+L        ++E  FD DI++DV+EECS+FGKL HI+VDKNS GFV
Sbjct: 541 AGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFV 597

[Close]

BLAST of IVF0017989 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 513.1 bits (1320), Expect = 3.0e-145
Identity = 353/656 (53.81%), Postives = 424/656 (64.63%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETAN-GGDGEMKSGDKHYSRSSKYKSDGKDDGEHRSKR 60
           MDFDEY+YLEKTVENP  +   E  N GGD ++KS  K  SRSS+          HR  +
Sbjct: 1   MDFDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDK 60

Query: 61  SKSDDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKD-DREGNREERSSKDRDV 120
            K  DE  D  R   R+ S HRSRSR+R+RD+HRSS+E+R +D +++ ++EER+ KDR+ 
Sbjct: 61  KKERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRER 120

Query: 121 DRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKER 180
           DRDK    DRD +GRD     E++RSRRSRSRSERHRS        + R+  L    KER
Sbjct: 121 DRDK----DRDSKGRD----HEKDRSRRSRSRSERHRS--------QEREKSLEIEPKER 180

Query: 181 ESRERGRDGR-------------------------------------------------R 240
           E+++R RD R                                                 R
Sbjct: 181 ETKDRDRDRRYTSELVIDFIIYVHWYCLLYNLMGHVPFKIIIVIEGTSRASCVYAYWRKR 240

Query: 241 YKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRS 300
           +KDKK++  EPEADPERDQRTVFAYQI+L+ATERDVYEFFSRAGKVRDVR+IMDR SRRS
Sbjct: 241 HKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRS 300

Query: 301 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSG 360
           +G+GYVEF D MSVPMAIALSGQ LL QPVMVKPSEAEKN VQST+AA G GG +GPYSG
Sbjct: 301 RGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG 360

Query: 361 GARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDALDESGHCKGFGFIQFTRL 420
           GARRLYVGNLH N++ED+LR+        F SF          DE+G CKGFGF+QF RL
Sbjct: 361 GARRLYVGNLHINMSEDDLRKV-------FESFGSVELVQVPRDETGLCKGFGFVQFARL 420

Query: 421 EDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVG--ASTGDLDEEDGGGLSLNASSRAS 480
           EDARNAL+LNGQLEIAGR IKVS VTDQ  + + G   +TGDLD++DGGGLSLNA SRA 
Sbjct: 421 EDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRAL 480

Query: 481 LMQKLDRTGAASSIAGSLGTHVVNNTGATMPAPILGG-ATIPSLGVGTSL-AAFPAFPGL 540
           LMQKLDR+G ASS            TG T  A   GG +TI SL     +  +FPA  GL
Sbjct: 481 LMQKLDRSGTASS------------TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGL 540

Query: 541 GAGVQVPPSLPIYL--------VLVL--------QSEPTFDLDIRDDVEEECSRFGKLKH 586
                +P  +P            L+L        ++E  FD DI++DV+EECS+FGKL H
Sbjct: 541 AGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNH 600

[Close]

BLAST of IVF0017989 vs. TAIR 10
Match: AT5G09880.1 (Splicing factor, CC1-like )

HSP 1 Score: 414.8 bits (1065), Expect = 1.1e-115
Identity = 309/596 (51.85%), Postives = 374/596 (62.75%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHYSRSSKYKSDGKDDGEH----- 60
           M+FDEY+YLEKTVE   G   K+  +G +      ++ Y +    +  G++ GE      
Sbjct: 1   MEFDEYEYLEKTVEEGAGSNKKKEESGNE----RSERSYRKREGGERQGEEGGEEERVSS 60

Query: 61  RSKRSKSDDESRDRDRHRDRTSSRHR-SRSRERDRDKHRSSKENRGKDDREGNREERSSK 120
           RSK+S+ D E     + RDR   RHR SR ++R+RDK R      G  D+E +R ERSSK
Sbjct: 61  RSKKSRGDGEENGGGK-RDRERERHRSSRDKDRERDKVR-----EGSRDKESDR-ERSSK 120

Query: 121 DRD-VDRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELRE 180
           +RD  DRDK R  DR+R          RER +RS SRS                    R 
Sbjct: 121 ERDRSDRDKPR--DRER----------REREKRSSSRS--------------------RR 180

Query: 181 REKERESRERGRDGRRYKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAG 240
            EKE E  ERG   RR++DKKD   EPEADPERDQRTVFAYQ+ LKATERDVYEFFS+AG
Sbjct: 181 EEKEPEVVERG--SRRHRDKKD---EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAG 240

Query: 241 KVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQS 300
           KVRDVRLIMDRNSRRSKGVGY+EF D MSVPMAIALSGQL L QPVMVKPSEAEKN  QS
Sbjct: 241 KVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQS 300

Query: 301 TS-AAGGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQTTLPLLPGFWSFWHCGTGPDAL 360
            S   GG G A        R+LYVGNLH N++E  LRQ        F +F         L
Sbjct: 301 NSTTVGGTGPA-------DRKLYVGNLHFNMSELQLRQI-------FEAFGPVELVQLPL 360

Query: 361 D-ESGHCKGFGFIQFTRLEDARNA-LSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDL 420
           D E+G CKGFGFIQF +LE ++ A ++LNG+LEIAGRTIKVS+V+D  G QD    + D 
Sbjct: 361 DPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADF 420

Query: 421 DEEDGGGLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATMPA--PILGGATIP 480
           D++DGGGL+LNA SRA LMQKLDR+G A+SI GSLG   +N      P   P    + +P
Sbjct: 421 DDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMNPSFPTSVLP 480

Query: 481 SLGVGTSLAAFPAFPGLGAGVQVPPSLPIYLVLVL----QSEPTFDLDIRDDVEEECSRF 540
           +        A P+F     G+   PS  + L  +     ++EP FDL+IRDDV +ECS++
Sbjct: 481 T-------TAIPSFVNEHVGL---PSECLLLKNMFDPATETEPNFDLEIRDDVADECSKY 524

Query: 541 GKLKHIYVDKNSAGFVYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAK 581
           G + HIYVDKNSAGFVYLRF+  E+A  AQRA++ RWFA KMI ATFM    YEAK
Sbjct: 541 GPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAK 524

The following BLAST results are available for this feature:

BLAST of IVF0017989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RC80	3.0e-49	36.93	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
Q8VH51	8.8e-49	36.93	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
Q14498	1.1e-48	36.93	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
Q86U06	7.2e-27	34.87	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]
O13845	1.5e-24	28.78	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]

BLAST of IVF0017989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIJ5	1.5e-285	92.67	RNA-binding protein 39 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 S...	[more]
A0A1S3BJ70	8.2e-284	92.50	RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 S...	[more]
A0A0A0K4Q5	1.2e-279	90.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014530 PE=4 SV=1	[more]
A0A6J1HYU3	4.1e-251	83.06	RNA-binding protein 39 OS=Cucurbita maxima OX=3661 GN=LOC111468152 PE=4 SV=1	[more]
A0A6J1GM48	1.6e-250	83.06	RNA-binding protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111455622 PE=4 S...	[more]

BLAST of IVF0017989 vs. NCBI nr


Match Name	Identity	Description
XP_008447936.1	92.67	PREDICTED: RNA-binding protein 39 isoform X1 [Cucumis melo] >XP_016900486.1 PRED...	[more]
XP_008447937.1	92.50	PREDICTED: RNA-binding protein 39 isoform X2 [Cucumis melo]	[more]
XP_011658601.1	90.83	RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744308.1 RNA-binding ...	[more]
XP_011658603.1	90.67	RNA-binding protein 39 isoform X2 [Cucumis sativus]	[more]
XP_038887515.1	87.35	RNA-binding protein 39-like isoform X2 [Benincasa hispida]	[more]

BLAST of IVF0017989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16940.1	3.3e-152	58.15	Splicing factor, CC1-like	[more]
AT2G16940.3	3.0e-145	54.73	Splicing factor, CC1-like	[more]
AT2G16940.2	3.0e-145	53.81	Splicing factor, CC1-like	[more]
AT5G09880.1	1.1e-115	51.85	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 210..282 e-value: 5.9E-16 score: 69.0 coord: 500..570 e-value: 9.8E-5 score: 31.7 coord: 313..392 e-value: 2.3E-8 score: 43.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 354..390 e-value: 1.2E-5 score: 25.1 coord: 219..277 e-value: 2.3E-10 score: 40.2 coord: 515..566 e-value: 3.3E-7 score: 30.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 209..286 score: 14.675204
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 499..574 score: 9.268642
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 312..396 score: 13.65188
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 310..407 e-value: 9.6E-15 score: 56.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 498..585 e-value: 2.7E-23 score: 84.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 149..296 e-value: 2.8E-25 score: 91.1
IPR006509	Splicing factor, RBM39-like	TIGRFAM	TIGR01622	TIGR01622	coord: 83..583 e-value: 1.6E-128 score: 427.8
IPR029123	Splicing factor RBM39, linker	PFAM	PF15519	RBM39linker	coord: 410..459 e-value: 6.1E-10 score: 40.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..208
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 1..581
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 1..581
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 506..573 e-value: 6.64084E-29 score: 108.016
None	No IPR available	CDD	cd12283	RRM1_RBM39_like	coord: 210..282 e-value: 1.17231E-43 score: 148.138
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 512..574
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 206..395

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017989.1	IVF0017989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding