IVF0017890 (gene) Melon (IVF77) v1

Overview


Name	IVF0017890
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonucleoside-diphosphate reductase
Location	chr08: 15120609 .. 15120809 (-)
RNA-Seq Expression	IVF0017890
Synteny	IVF0017890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATGGTGAAACGAGATGATCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGAAAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

mRNA sequence

ATGTATATGGTGAAACGAGATGATCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGAAAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

Coding sequence (CDS)

ATGTATATGGTGAAACGAGATGATCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGAAAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

Protein sequence

MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWPLKWLLL

Homology

[Close]

BLAST of IVF0017890 vs. ExPASy Swiss-Prot
Match: Q9SJ20 (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=3702 GN=RNR1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRD RQE VHFDKITARLKKLSYGL+ D CDPVLV+QKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of IVF0017890 vs. ExPASy Swiss-Prot
Match: Q03604 (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans OX=6239 GN=rnr-1 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-13
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 2  YMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMN 59
          Y+VKRD R+E VHFDKIT+R++KLSYGLN+D  DPV V+ KV  G+YKG+    L N
Sbjct: 8  YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDN 64

[Close]

BLAST of IVF0017890 vs. ExPASy Swiss-Prot
Match: Q9UW15 (Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rnr-1 PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+ KRD RQE V FDKITAR+ +L YGL+++  DPV ++QKV  GVY G+  A L
Sbjct: 1  MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQL 56

[Close]

BLAST of IVF0017890 vs. ExPASy Swiss-Prot
Match: P48591 (Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster OX=7227 GN=RnrL PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-11
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMN 59
          +Y++KRD RQE VHFDKIT+R++KL Y LN+D  DPV ++ +V  G+Y G+    L N
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDN 69

[Close]

BLAST of IVF0017890 vs. ExPASy Swiss-Prot
Match: P36602 (Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdc22 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 9.1e-11
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMN 59
          M++ KRD RQE V FDKITAR+ +L YGL+ D  DPV ++QKV  GVY G+    L N
Sbjct: 1  MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDN 58

[Close]

BLAST of IVF0017890 vs. ExPASy TrEMBL
Match: A0A5D3CUQ2 (Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00040 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.3e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 67
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]

BLAST of IVF0017890 vs. ExPASy TrEMBL
Match: A0A5A7URH2 (Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00100 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.9e-28
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRD RQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQ VCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 67
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]

BLAST of IVF0017890 vs. ExPASy TrEMBL
Match: A0A5D3CLK7 (Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00200 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.9e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRD RQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of IVF0017890 vs. ExPASy TrEMBL
Match: A0A5A7SMV6 (Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00600 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.9e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRD RQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of IVF0017890 vs. ExPASy TrEMBL
Match: A0A7J0GUY0 (Ribonucleoside-diphosphate reductase OS=Actinidia rufa OX=165716 GN=Acr_24g0008450 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.9e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRD RQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of IVF0017890 vs. NCBI nr
Match: TYK14136.1 (ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 3.30e-41
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 66
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]

BLAST of IVF0017890 vs. NCBI nr
Match: KAA0056131.1 (ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (333), Expect = 6.43e-39
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRD RQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQ VCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 66
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]

BLAST of IVF0017890 vs. NCBI nr
Match: XP_021823344.1 (ribonucleoside-diphosphate reductase large subunit-like, partial [Prunus avium])

HSP 1 Score: 95.1 bits (235), Expect = 3.06e-23
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 56
          MY+VKRD RQEAVHFDKITARLKKLSYGL+ D CDPVLV+QKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of IVF0017890 vs. NCBI nr
Match: RLM60370.1 (ribonucleoside-diphosphate reductase large subunit [Panicum miliaceum])

HSP 1 Score: 93.6 bits (231), Expect = 3.77e-23
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGI 51
          MY+VKRD RQE+VHFDKITARLKKLSYGL+ + CDPVLV+QKVCVGVYKG+
Sbjct: 1  MYVVKRDGRQESVHFDKITARLKKLSYGLSAEHCDPVLVAQKVCVGVYKGV 51

[Close]

BLAST of IVF0017890 vs. NCBI nr
Match: KAG5609091.1 (hypothetical protein H5410_020372 [Solanum commersonii])

HSP 1 Score: 95.9 bits (237), Expect = 4.07e-23
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 56
          MY+VKRD RQEAVHFDKITARLKKLSYGL+ D CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSPDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of IVF0017890 vs. TAIR 10
Match: AT2G21790.1 (ribonucleotide reductase 1 )

HSP 1 Score: 94.0 bits (232), Expect = 4.9e-20
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRD RQE VHFDKITARLKKLSYGL+ D CDPVLV+QKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQL 56

The following BLAST results are available for this feature:

BLAST of IVF0017890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ20	6.9e-19	76.79	Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=37...	[more]
Q03604	4.3e-13	61.40	Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans OX=...	[more]
Q9UW15	2.4e-11	57.14	Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain AT...	[more]
P48591	6.9e-11	51.72	Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster OX...	[more]
P36602	9.1e-11	55.17	Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (s...	[more]

BLAST of IVF0017890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CUQ2	5.3e-30	100.00	Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. mak...	[more]
A0A5A7URH2	2.9e-28	96.97	Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. mak...	[more]
A0A5D3CLK7	7.9e-18	82.14	Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SMV6	7.9e-18	82.14	Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A7J0GUY0	7.9e-18	82.14	Ribonucleoside-diphosphate reductase OS=Actinidia rufa OX=165716 GN=Acr_24g00084...	[more]

BLAST of IVF0017890 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14136.1	3.30e-41	100.00	ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuw...	[more]
KAA0056131.1	6.43e-39	96.97	ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuw...	[more]
XP_021823344.1	3.06e-23	78.57	ribonucleoside-diphosphate reductase large subunit-like, partial [Prunus avium]	[more]
RLM60370.1	3.77e-23	82.35	ribonucleoside-diphosphate reductase large subunit [Panicum miliaceum]	[more]
KAG5609091.1	4.07e-23	80.36	hypothetical protein H5410_020372 [Solanum commersonii]	[more]

BLAST of IVF0017890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21790.1	4.9e-20	76.79	ribonucleotide reductase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039718	Ribonucleoside-diphosphate reductase large subunit	PANTHER	PTHR11573	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	coord: 1..55
None	No IPR available	PANTHER	PTHR11573:SF25	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE	coord: 1..55
IPR005144	ATP-cone domain	PROSITE	PS51161	ATP_CONE	coord: 1..66 score: 9.368687
IPR008926	Ribonucleotide reductase R1 subunit, N-terminal	SUPERFAMILY	48168	R1 subunit of ribonucleotide reductase, N-terminal domain	coord: 6..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017890.1	IVF0017890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009263	deoxyribonucleotide biosynthetic process
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005971	ribonucleoside-diphosphate reductase complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor