IVF0017876 (gene) Melon (IVF77) v1

Overview


Name	IVF0017876
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr02: 15253023 .. 15253421 (-)
RNA-Seq Expression	IVF0017876
Synteny	IVF0017876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTGACAAAGAGTTGTTCAAGGACCTTGACATATCATTCAAGTCAAGGGTGAAAATAGGAAATAGTGCGTATTTAGAAGTAAAGGGGAAAGGCACAGTGTCAACAGACAGTTGTGCTGGAACCAAGTTGATTACTAAAGTGTTGTTTATCCCTGAGATTGATCAAAACTTGTTAAACGTTGGTCAACTAGTAGAGAAGGAATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTAATTTCTGATTCCAATGGGAATGAGCTCTTCAAAATAAACATGCAACGCAAGAGCTTCTCGTTGAATCTGCTTGAAGAAGAGCAAGTAGCTTTCAAGTGTCAAGTGAATGACACTAAGTTCTGGCATAAGAGGTTGGGCATTTTCATCAGTAAGGGTTGA

mRNA sequence

ATGACAAGTGACAAAGAGTTGTTCAAGGACCTTGACATATCATTCAAGTCAAGGGTGAAAATAGGAAATAGTGCGTATTTAGAAGTAAAGGGGAAAGGCACAGTGTCAACAGACAGTTGTGCTGGAACCAAGTTGATTACTAAAGTGTTGTTTATCCCTGAGATTGATCAAAACTTGTTAAACGTTGGTCAACTAGTAGAGAAGGAATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTAATTTCTGATTCCAATGGGAATGAGCTCTTCAAAATAAACATGCAACGCAAGAGCTTCTCGTTGAATCTGCTTGAAGAAGAGCAAGTAGCTTTCAAGTGTCAAGTGAATGACACTAAGTTCTGGCATAAGAGGTTGGGCATTTTCATCAGTAAGGGTTGA

Coding sequence (CDS)

ATGACAAGTGACAAAGAGTTGTTCAAGGACCTTGACATATCATTCAAGTCAAGGGTGAAAATAGGAAATAGTGCGTATTTAGAAGTAAAGGGGAAAGGCACAGTGTCAACAGACAGTTGTGCTGGAACCAAGTTGATTACTAAAGTGTTGTTTATCCCTGAGATTGATCAAAACTTGTTAAACGTTGGTCAACTAGTAGAGAAGGAATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTAATTTCTGATTCCAATGGGAATGAGCTCTTCAAAATAAACATGCAACGCAAGAGCTTCTCGTTGAATCTGCTTGAAGAAGAGCAAGTAGCTTTCAAGTGTCAAGTGAATGACACTAAGTTCTGGCATAAGAGGTTGGGCATTTTCATCAGTAAGGGTTGA

Protein sequence

MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG

Homology

[Close]

BLAST of IVF0017876 vs. ExPASy TrEMBL
Match: A0A5D3BE46 (Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold222G00220 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.9e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 120
           NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 270

Query: 121 WHKRLGIFISKG 133
           WHKRLGIFISKG
Sbjct: 271 WHKRLGIFISKG 282

[Close]

BLAST of IVF0017876 vs. ExPASy TrEMBL
Match: A0A5A7TNI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00270 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.0e-64
Identity = 128/132 (96.97%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MTSDKELFKDLDISFKS+VKIGN AYLEVKGKGTVSTDSCAGTKLITKVLFI EIDQNLL
Sbjct: 1   MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 120
           NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQ KSFSLNLLEEEQVAFKCQVNDTKF
Sbjct: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTKF 120

Query: 121 WHKRLGIFISKG 133
           WHKRLGIFISKG
Sbjct: 121 WHKRLGIFISKG 132

[Close]

BLAST of IVF0017876 vs. ExPASy TrEMBL
Match: A0A6J1DWT9 (uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025149 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.8e-45
Identity = 97/132 (73.48%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           M SDKELFKDLD SFKSRVKIGN  YLEVKGK T S +SC GTKLIT+VLF+P I QNLL
Sbjct: 273 MXSDKELFKDLDRSFKSRVKIGNGEYLEVKGKXTXSIESCVGTKLITEVLFVPXIAQNLL 332

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 120
           +VGQLVEK FKVLFE  KCLISDSNGNE FKI MQ KSFSL+ +E++Q+  KCQVNDT+ 
Sbjct: 333 SVGQLVEKGFKVLFEYEKCLISDSNGNEWFKIKMQHKSFSLDPVEKDQIVSKCQVNDTEL 392

Query: 121 WHKRLGIFISKG 133
            HKRLG F  +G
Sbjct: 393 RHKRLGHFHQRG 404

[Close]

BLAST of IVF0017876 vs. ExPASy TrEMBL
Match: A0A6P4PSP3 (uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481577 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.6e-39
Identity = 84/114 (73.68%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MT D++LFKDLD S KS+V+IGN  YLEVKG+GTV+ +SC GTKLI+ VLF+PEIDQNLL
Sbjct: 228 MTYDEKLFKDLDRSLKSKVRIGNGEYLEVKGRGTVAIESCTGTKLISDVLFVPEIDQNLL 287

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQ 115
           +VGQLVEK FKV+FEEG CLI DS+GNELF I MQ+KSFSLN  E+EQVA KCQ
Sbjct: 288 SVGQLVEKRFKVMFEEGMCLILDSSGNELFWIKMQKKSFSLNPFEKEQVASKCQ 341

[Close]

BLAST of IVF0017876 vs. ExPASy TrEMBL
Match: A0A1U8HMJ5 (uncharacterized protein LOC107887515 OS=Gossypium hirsutum OX=3635 GN=LOC107887515 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MT D++LFKDLD S KS+V+IGN  YLEVKG+GTV+ +SC GTKLI  VLF+PEIDQNLL
Sbjct: 125 MTYDEKLFKDLDRSLKSKVRIGNGEYLEVKGRGTVTIESCTGTKLILDVLFVPEIDQNLL 184

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQ 115
           +VGQLVEK FKV+FEEG CLI DS+GNELF I MQ+KSFSLN  E+EQVA KCQ
Sbjct: 185 SVGQLVEKRFKVMFEEGMCLILDSSGNELFWIKMQKKSFSLNPFEKEQVASKCQ 238

[Close]

BLAST of IVF0017876 vs. NCBI nr
Match: TYJ98110.1 (putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (676), Expect = 5.51e-87
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 120
           NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 270

Query: 121 WHKRLGIFISKG 132
           WHKRLGIFISKG
Sbjct: 271 WHKRLGIFISKG 282

[Close]

BLAST of IVF0017876 vs. NCBI nr
Match: KAA0043367.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (656), Expect = 4.05e-86
Identity = 128/132 (96.97%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MTSDKELFKDLDISFKS+VKIGN AYLEVKGKGTVSTDSCAGTKLITKVLFI EIDQNLL
Sbjct: 1   MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 120
           NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQ KSFSLNLLEEEQVAFKCQVNDTKF
Sbjct: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTKF 120

Query: 121 WHKRLGIFISKG 132
           WHKRLGIFISKG
Sbjct: 121 WHKRLGIFISKG 132

[Close]

BLAST of IVF0017876 vs. NCBI nr
Match: XP_038885771.1 (uncharacterized protein LOC120076063 [Benincasa hispida])

HSP 1 Score: 192 bits (487), Expect = 1.01e-59
Identity = 96/119 (80.67%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MTSDKELFKDLD SFKSRVKIGNS YLEVKGK TVS +SC  TKLIT+VLF+PEIDQNLL
Sbjct: 58  MTSDKELFKDLDKSFKSRVKIGNSEYLEVKGKDTVSIESCVETKLITEVLFVPEIDQNLL 117

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTK 119
           +VGQLVEK FKVLFE+GKCLISDSNGN+LFKI MQ   F L+ LE+EQ+AFKCQVNDT+
Sbjct: 118 SVGQLVEKGFKVLFEKGKCLISDSNGNKLFKIKMQHTRFLLDPLEKEQIAFKCQVNDTE 176

[Close]

BLAST of IVF0017876 vs. NCBI nr
Match: XP_038902496.1 (uncharacterized protein LOC120089156 [Benincasa hispida])

HSP 1 Score: 191 bits (485), Expect = 2.03e-58
Identity = 98/115 (85.22%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MTSDKELFKDLD SFKSRVKIGN  YLEVKGKGTVS +SCAGTKLIT+VLF+PEIDQNLL
Sbjct: 106 MTSDKELFKDLDKSFKSRVKIGNDEYLEVKGKGTVSIESCAGTKLITEVLFVPEIDQNLL 165

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQV 115
           ++GQLVEK FKVLFEE KCLISDSNGNELFKI MQ KSFSL+ LEE Q+AFKCQV
Sbjct: 166 SIGQLVEKGFKVLFEERKCLISDSNGNELFKIKMQYKSFSLDPLEE-QIAFKCQV 219

[Close]

BLAST of IVF0017876 vs. NCBI nr
Match: XP_038890984.1 (uncharacterized protein LOC120080400 [Benincasa hispida])

HSP 1 Score: 190 bits (482), Expect = 3.68e-57
Identity = 99/130 (76.15%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 60
           MTSDKELFKDLD SFKSR+KIGN  YLEVKGKG VS +SCAGTKLITKVLF+PEIDQNLL
Sbjct: 1   MTSDKELFKDLDKSFKSRMKIGNCEYLEVKGKGIVSIESCAGTKLITKVLFVPEIDQNLL 60

Query: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 120
           +VGQLVEK FKVLFEEGKCLI  SNGNEL KI MQ KSFSL+ LE++Q+ FKCQV   K 
Sbjct: 61  SVGQLVEKGFKVLFEEGKCLIFYSNGNELLKIKMQHKSFSLDPLEKKQITFKCQVKRDKL 120

Query: 121 WHK-RLGIFI 129
             K   GIF+
Sbjct: 121 SEKFEPGIFV 130

[Close]

BLAST of IVF0017876 vs. TAIR 10
Match: AT3G20980.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-05
Identity = 34/103 (33.01%), Postives = 48/103 (46.60%), Query Frame = 0


Query: 1   MTSDKELFKDLDISFKSRVKI-----GNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEI 60
           MT   + F  LD S K +VK        +    V+G G V+  +  G K I  VL++P I
Sbjct: 279 MTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEGNKTIKNVLYVPGI 338

Query: 61  DQNLLNVGQLVEKEFKVLFEEGK-CLISDSNGNELFKINMQRK 98
           + N L+V QL    F+V  E    C + D    ++F  NM  K
Sbjct: 339 EGNALSVSQLKRNGFEVSMERRTGCFVWDRTTGKMFGKNMWEK 381

The following BLAST results are available for this feature:

BLAST of IVF0017876 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE46	4.9e-67	100.00	Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7TNI4	1.0e-64	96.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6J1DWT9	6.8e-45	73.48	uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6P4PSP3	9.6e-39	73.68	uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481...	[more]
A0A1U8HMJ5	1.6e-38	73.68	uncharacterized protein LOC107887515 OS=Gossypium hirsutum OX=3635 GN=LOC1078875...	[more]

BLAST of IVF0017876 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98110.1	5.51e-87	100.00	putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa]	[more]
KAA0043367.1	4.05e-86	96.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_038885771.1	1.01e-59	80.67	uncharacterized protein LOC120076063 [Benincasa hispida]	[more]
XP_038902496.1	2.03e-58	85.22	uncharacterized protein LOC120089156 [Benincasa hispida]	[more]
XP_038890984.1	3.68e-57	76.15	uncharacterized protein LOC120080400 [Benincasa hispida]	[more]

BLAST of IVF0017876 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20980.1	3.1e-05	33.01	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 1..102
None	No IPR available	PANTHER	PTHR34222:SF31	SUBFAMILY NOT NAMED	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017876.1	IVF0017876.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008270	zinc ion binding