IVF0017861 (gene) Melon (IVF77) v1

Overview
NameIVF0017861
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr02: 15718884 .. 15719264 (-)
RNA-Seq ExpressionIVF0017861
SyntenyIVF0017861
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCGCATCTTGCAACGAAGAGCCTCCTTAACAAACCCTTTTACTATTACGACGAACTTGCATATGTGTTTGAGAGGGATAGAGCGACGGGTCGCTTTATAGAGACCTTCGTCGACATCGGGTCTAATGAGCATGCCGAGTATGAGGGGTTTGACATGTCGGATGGGAACGATATGAAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTCCCAGGATGATGTACGCGCATCACGACCCGCTCACGTGTCAGATGGTAAACCCTGATCGAGCAGATCTAAGAGAAAGAGGGAAAGCCAGTGGGAGGGTAAGATTGACATGATACATATGGTCCTGGAGTGTATGAATGACCAACTCAAGACCATAGTCGAGTGA

mRNA sequence

ATGCAGTCGCATCTTGCAACGAAGAGCCTCCTTAACAAACCCTTTTACTATTACGACGAACTTGCATATGTGTTTGAGAGGGATAGAGCGACGGGTCGCTTTATAGAGACCTTCGTCGACATCGGGTCTAATGAGCATGCCGAGTATGAGGGGTTTGACATGTCGGATGGGAACGATATGAAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTCCCAGGATGATGTACGCGCATCACGACCCGCTCACAGAAAGAGGGAAAGCCAGTGGGAGGGTAAGATTGACATGATACATATGGTCCTGGAGTGTATGAATGACCAACTCAAGACCATAGTCGAGTGA

Coding sequence (CDS)

ATGCAGTCGCATCTTGCAACGAAGAGCCTCCTTAACAAACCCTTTTACTATTACGACGAACTTGCATATGTGTTTGAGAGGGATAGAGCGACGGGTCGCTTTATAGAGACCTTCGTCGACATCGGGTCTAATGAGCATGCCGAGTATGAGGGGTTTGACATGTCGGATGGGAACGATATGAAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTCCCAGGATGATGTACGCGCATCACGACCCGCTCACAGAAAGAGGGAAAGCCAGTGGGAGGGTAAGATTGACATGATACATATGGTCCTGGAGTGTATGAATGACCAACTCAAGACCATAGTCGAGTGA

Protein sequence

MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAHRKRESQWEGKIDMIHMVLECMNDQLKTIVE
Homology
BLAST of IVF0017861 vs. ExPASy TrEMBL
Match: A0A5D3DXB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00660 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 91/126 (72.22%), Postives = 97/126 (76.98%), Query Frame = 0

Query: 1   MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDM 60
           MQSH A K LLNK F YYDELAYVF RDRATG+F ETFVDI SNE A YEGFDMSD NDM
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  KFPSMYSQGIDMSQDDVRASRP------------AHRKRESQWEGKIDMIHMVLECMNDQ 115
           +FP MYSQ I MSQDDVRASRP            + RKRESQWEG+I+MIHM LEC NDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

BLAST of IVF0017861 vs. ExPASy TrEMBL
Match: A0A5D3BP98 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00510 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.7e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 3   SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKF 62
           SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKF
Sbjct: 160 SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKF 219

Query: 63  PSMYSQGIDMSQDDVRASRPAH 85
           PSMYSQGIDMSQDDVRASRPAH
Sbjct: 220 PSMYSQGIDMSQDDVRASRPAH 241

BLAST of IVF0017861 vs. ExPASy TrEMBL
Match: A0A5A7TT49 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001460 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.3e-39
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = 0

Query: 4   HLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFP 63
           H ATK LLNK FYYYD+LAYVFERDRATGRFIETF DIGSNEHAEYEGFDMSDGNDMKFP
Sbjct: 126 HPATKGLLNKSFYYYDKLAYVFERDRATGRFIETFADIGSNEHAEYEGFDMSDGNDMKFP 185

Query: 64  SMYSQGIDMSQDDVRASRPAH------------RKRESQWEGKI 96
           SMYSQGIDMSQDDVRASRPAH            RKRESQWEG++
Sbjct: 186 SMYSQGIDMSQDDVRASRPAHVSDGKPGSSRSKRKRESQWEGEM 229

BLAST of IVF0017861 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.1e-38
Identity = 86/126 (68.25%), Postives = 100/126 (79.37%), Query Frame = 0

Query: 1   MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDM 60
           ++SH A KSLLNK F YYDELAYVFE DRATGRF+ETF DIGSNE A YEGFDMSDGND+
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 61  KFPSMYSQGIDMSQDDVRASRPA------------HRKRESQWEGKIDMIHMVLECMNDQ 115
           +FP MYSQGID+SQDDVR S+PA             RKR SQ EG++D+I+M L+CMNDQ
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQ 297

BLAST of IVF0017861 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34
Identity = 82/126 (65.08%), Postives = 94/126 (74.60%), Query Frame = 0

Query: 1   MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDM 60
           MQSH   K LLNK F YYDELAY+F+RDR T RFIETF DIGSNE   YEGF+MSDGN+ 
Sbjct: 1   MQSHPTAKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE- 60

Query: 61  KFPSMYSQGIDMSQDDVRASRPAH------------RKRESQWEGKIDMIHMVLECMNDQ 115
           +F S+YSQGIDMSQ+DV AS+PAH            RKR SQ +G+I +IHM L+CMNDQ
Sbjct: 61  EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQ 120

BLAST of IVF0017861 vs. NCBI nr
Match: KAA0055946.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 5.72e-51
Identity = 91/126 (72.22%), Postives = 97/126 (76.98%), Query Frame = 0

Query: 1   MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDM 60
           MQSH A K LLNK F YYDELAYVF RDRATG+F ETFVDI SNE A YEGFDMSD NDM
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  KFPSMYSQGIDMSQDDVRASRP------------AHRKRESQWEGKIDMIHMVLECMNDQ 114
           +FP MYSQ I MSQDDVRASRP            + RKRESQWEG+I+MIHM LEC NDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

BLAST of IVF0017861 vs. NCBI nr
Match: TYK00096.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 3.84e-49
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 3   SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKF 62
           SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKF
Sbjct: 160 SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKF 219

Query: 63  PSMYSQGIDMSQDDVRASRPAH 84
           PSMYSQGIDMSQDDVRASRPAH
Sbjct: 220 PSMYSQGIDMSQDDVRASRPAH 241

BLAST of IVF0017861 vs. NCBI nr
Match: KAA0046602.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 4.62e-49
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = 0

Query: 4   HLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFP 63
           H ATK LLNK FYYYD+LAYVFERDRATGRFIETF DIGSNEHAEYEGFDMSDGNDMKFP
Sbjct: 126 HPATKGLLNKSFYYYDKLAYVFERDRATGRFIETFADIGSNEHAEYEGFDMSDGNDMKFP 185

Query: 64  SMYSQGIDMSQDDVRASRPAH------------RKRESQWEGKI 95
           SMYSQGIDMSQDDVRASRPAH            RKRESQWEG++
Sbjct: 186 SMYSQGIDMSQDDVRASRPAHVSDGKPGSSRSKRKRESQWEGEM 229

BLAST of IVF0017861 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 2.19e-47
Identity = 86/126 (68.25%), Postives = 100/126 (79.37%), Query Frame = 0

Query: 1   MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDM 60
           ++SH A KSLLNK F YYDELAYVFE DRATGRF+ETF DIGSNE A YEGFDMSDGND+
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 61  KFPSMYSQGIDMSQDDVRASRPA------------HRKRESQWEGKIDMIHMVLECMNDQ 114
           +FP MYSQGID+SQDDVR S+PA             RKR SQ EG++D+I+M L+CMNDQ
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQ 297

BLAST of IVF0017861 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 1.83e-44
Identity = 82/126 (65.08%), Postives = 94/126 (74.60%), Query Frame = 0

Query: 1   MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDM 60
           MQSH   K LLNK F YYDELAY+F+RDR T RFIETF DIGSNE   YEGF+MSDGN+ 
Sbjct: 1   MQSHPTAKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE- 60

Query: 61  KFPSMYSQGIDMSQDDVRASRPAH------------RKRESQWEGKIDMIHMVLECMNDQ 114
           +F S+YSQGIDMSQ+DV AS+PAH            RKR SQ +G+I +IHM L+CMNDQ
Sbjct: 61  EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQ 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DXB22.2e-3972.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BP983.7e-39100.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TT496.3e-3981.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BQI74.1e-3868.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9D53.6e-3465.08Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0055946.15.72e-5172.22retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon p... [more]
TYK00096.13.84e-49100.00putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0046602.14.62e-4981.73retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033884.12.19e-4768.25retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... [more]
KAA0050806.11.83e-4465.08retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 102..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017861.1IVF0017861.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding