IVF0017813 (gene) Melon (IVF77) v1

Overview


Name	IVF0017813
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr08: 24531147 .. 24531604 (-)
RNA-Seq Expression	IVF0017813
Synteny	IVF0017813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCTTCCAACGAGTGTCGAACGTTCAACCGGTGTCAGAAACCACTGGAAATGCACTTGCATCAAACGAAACGGGCTGAGCTTGAGGACTTCCAGTGCTCATCCCAAGAAAATGCGAGCGAGAACAGCCCGGACTCTGTTTTCTCATCCTGGGGTAAAAAGCGGTTTCCCTACGGTTTCTTCCCTTTACTTCTATTGGACATAAGTCTTTCGATCTTCAGGACTCGTACTCCGAGGACCTTAAACGAAATTTCTGGTATGCTCCATGACACCTTTTCCAAAGGTATAGGTCGTGATGCGAGCTCGTTGGTGGGAGAACTGAGGTGCGACCCAAAATGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACCCTCCTCCGGTGTAAGAAATCACTAAAAATGCACTTGCAGCGAAGGAAACGGTCTGAGCTCGAGGACTTCCGGTGA

mRNA sequence

ATGGCCAATGCTTCCAACGAGTGTCGAACGTTCAACCGGTGTCAGAAACCACTGGAAATGCACTTGCATCAAACGAAACGGGCTGAGCTTGAGGACTTCCAGTGCTCATCCCAAGAAAATGCGAGCGAGAACAGCCCGGACTCTGTTTTCTCATCCTGGGGTAAAAAGCGGTTTCCCTACGGTTTCTTCCCTTTACTTCTATTGGACATAAGTCTTTCGATCTTCAGGACTCGTACTCCGAGGACCTTAAACGAAATTTCTGGTATGCTCCATGACACCTTTTCCAAAGGTATAGGTCGTGATGCGAGCTCGTTGGTGGGAGAACTGAGGTGCGACCCAAAATGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACCCTCCTCCGGTCGAAGGAAACGGTCTGAGCTCGAGGACTTCCGGTGA

Coding sequence (CDS)

ATGGCCAATGCTTCCAACGAGTGTCGAACGTTCAACCGGTGTCAGAAACCACTGGAAATGCACTTGCATCAAACGAAACGGGCTGAGCTTGAGGACTTCCAGTGCTCATCCCAAGAAAATGCGAGCGAGAACAGCCCGGACTCTGTTTTCTCATCCTGGGGTAAAAAGCGGTTTCCCTACGGTTTCTTCCCTTTACTTCTATTGGACATAAGTCTTTCGATCTTCAGGACTCGTACTCCGAGGACCTTAAACGAAATTTCTGGTATGCTCCATGACACCTTTTCCAAAGGTATAGGTCGTGATGCGAGCTCGTTGGTGGGAGAACTGAGGTGCGACCCAAAATGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACCCTCCTCCGGTCGAAGGAAACGGTCTGAGCTCGAGGACTTCCGGTGA

Protein sequence

MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSGRRKRSELEDFR

Homology

[Close]

BLAST of IVF0017813 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 79/131 (60.31%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1   MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPY 60
           M +ASNE RT  RCQKPLEMHL + KRAELEDF   SQEN SEN+ + VFSSWGKK  P 
Sbjct: 1   MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61  GFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWP 120
           GFFPL  +          T +T      ML DTFS+GIG+ ASSL GE RCDPK SK WP
Sbjct: 61  GFFPLFRIGHKSFDLEDHTLKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWP 120

Query: 121 MLPTSGEPSSG 132
           MLPT  + SSG
Sbjct: 121 MLPTYRKRSSG 131

[Close]

BLAST of IVF0017813 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 0


Query: 1   MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPY 60
           MANASNE +T  RCQKPLEM+L + K+ EL+DF CSSQENAS+N+PDS FSSWGKKR PY
Sbjct: 1   MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61  GFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWP 120
           GFF LL           R      ++ G  ++ F++      S L GEL CD K SKRWP
Sbjct: 61  GFFHLL-----------RIGHKSFDLQGSYYEDFNRHSWH--SXLEGELWCDQKGSKRWP 120

Query: 121 MLPTSGEPSSGRR 134
           +LPTSGE SSG R
Sbjct: 121 ILPTSGECSSGIR 120

[Close]

BLAST of IVF0017813 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 101/277 (36.46%), Postives = 106/277 (38.27%), Query Frame = 0


Query: 1   MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPY 60
           MANASNE R   RCQKPLEMHL + KR ELEDF+CSSQEN SEN+PDS FSSWGKKR P 
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  GFFPLL------------------------------------------------------ 120
           GFFPLL                                                      
Sbjct: 225 GFFPLLRIGHKSGSELVGGRTVVRSKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSS 284

Query: 121 ------------------------------------LLDISLSIF--------------- 134
                                               +L  SLSIF               
Sbjct: 285 RTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGML 344

[Close]

BLAST of IVF0017813 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 60/102 (58.82%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 32  DFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLH 91
           DF+CSSQEN S+N+ DSVFSSW K   P       +L I LSIF    PRT     GML 
Sbjct: 107 DFRCSSQENTSKNATDSVFSSWVKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLP 166

Query: 92  DTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSGRR 134
           D FS GI R+A SL GEL CDPK S+RWPMLPTSG+ SS  R
Sbjct: 167 DMFSGGIDREARSLEGELWCDPKRSERWPMLPTSGKRSSDVR 208

[Close]

BLAST of IVF0017813 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 73/198 (36.87%), Postives = 87/198 (43.94%), Query Frame = 0


Query: 22   LHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL--------------- 81
            L ++KR EL+DF+CSSQENA+E +PDS+FSS  KKR P  FF LL               
Sbjct: 1430 LQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDL 1489

Query: 82   ------------------------------------------------------------ 134
                                                                        
Sbjct: 1490 KRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAK 1549

[Close]

BLAST of IVF0017813 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 9.64e-40
Identity = 79/131 (60.31%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1   MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPY 60
           M +ASNE RT  RCQKPLEMHL + KRAELEDF   SQEN SEN+ + VFSSWGKK  P 
Sbjct: 1   MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61  GFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWP 120
           GFFPL  +          T +T      ML DTFS+GIG+ ASSL GE RCDPK SK WP
Sbjct: 61  GFFPLFRIGHKSFDLEDHTLKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWP 120

Query: 121 MLPTSGEPSSG 131
           MLPT  + SSG
Sbjct: 121 MLPTYRKRSSG 131

[Close]

BLAST of IVF0017813 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 2.19e-34
Identity = 74/131 (56.49%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1   MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPY 60
           MANASNE +T  RCQKPLEM+L + K+ EL+DF CSSQENAS+N+PDS FSSWGKKR PY
Sbjct: 1   MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61  GFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWP 120
           GFF LL           R      ++ G  ++ F++      S L GEL CD K SKRWP
Sbjct: 61  GFFHLL-----------RIGHKSFDLQGSYYEDFNRHSWH--SXLEGELWCDQKGSKRWP 118

Query: 121 MLPTSGEPSSG 131
           +LPTSGE SSG
Sbjct: 121 ILPTSGECSSG 118

[Close]

BLAST of IVF0017813 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 3.63e-33
Identity = 100/275 (36.36%), Postives = 105/275 (38.18%), Query Frame = 0


Query: 1   MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPY 60
           MANASNE R   RCQKPLEMHL + KR ELEDF+CSSQEN SEN+PDS FSSWGKKR P 
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  GFFPLL------------------------------------------------------ 120
           GFFPLL                                                      
Sbjct: 225 GFFPLLRIGHKSGSELVGGRTVVRSKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSS 284

Query: 121 ------------------------------------LLDISLSIF--------------- 131
                                               +L  SLSIF               
Sbjct: 285 RTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGML 344

[Close]

BLAST of IVF0017813 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 6.56e-27
Identity = 59/99 (59.60%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 32  DFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLH 91
           DF+CSSQEN S+N+ DSVFSSW K   P       +L I LSIF    PRT     GML 
Sbjct: 107 DFRCSSQENTSKNATDSVFSSWVKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLP 166

Query: 92  DTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSS 130
           D FS GI R+A SL GEL CDPK S+RWPMLPTSG+ SS
Sbjct: 167 DMFSGGIDREARSLEGELWCDPKRSERWPMLPTSGKRSS 205

[Close]

BLAST of IVF0017813 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 2.54e-22
Identity = 72/196 (36.73%), Postives = 86/196 (43.88%), Query Frame = 0


Query: 22   LHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL--------------- 81
            L ++KR EL+DF+CSSQENA+E +PDS+FSS  KKR P  FF LL               
Sbjct: 1430 LQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDL 1489

Query: 82   ------------------------------------------------------------ 131
                                                                        
Sbjct: 1490 KRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAK 1549

The following BLAST results are available for this feature:

BLAST of IVF0017813 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5W4	1.2e-31	60.31	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UVV0	9.7e-29	56.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFP2	1.1e-27	36.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CZ27	1.6e-20	58.82	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7V5J2	2.0e-18	36.87	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]

BLAST of IVF0017813 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035524.1	9.64e-40	60.31	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0057641.1	2.19e-34	56.49	hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]	[more]
TYK22521.1	3.63e-33	36.36	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
TYK15439.1	6.56e-27	59.60	uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]	[more]
KAA0062888.1	2.54e-22	36.73	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]

BLAST of IVF0017813 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017813.1	IVF0017813.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid