IVF0017798 (gene) Melon (IVF77) v1

Overview


Name	IVF0017798
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transcription termination factor MTEF1
Location	tig00000060: 431219 .. 431896 (-)
RNA-Seq Expression	IVF0017798
Synteny	IVF0017798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGAAGTGAGGAGAAGACTCTCGTTGCCATAAAGCGCTTTGCGGGTATTCTCACTTGGGATCTTCGAATTTCAGCTGGTCCCAGTATTGAAATTCTGAAACAAAGTGGTGTGCCGGATTCAAATATTTTAAAATATCTTCAGTTCCAGCCTAGACTGTTCTTGACAAATCCCATCCGATTCAAGGAGAGTGTAGAGAGAGTTACGGAAATGGGATTCAACCCTCAACAAATGCAGTTTCTTGTTGCTGTGTTTGCTCTGCGTTCAATGACCAAATCTACGTGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTGTCTGAAGAAGAGGTCCGTTTAGCATTTAGAAGGTATCCATGGTGTATGATAGCTTCTGAGGATAAGATTAATGATGTAATGGATTTTTTTGTCAACAAAATTGGATGCGAATCATCTTTCGCTGCTAGAAGACCAATTTTAATTTACCGTAGTTTGAAGAAGAGGATTTTGCCTAGAGGCTACGTTTATCAAGTTTTGCTGTCAAAGGGTTTGATTAAGAATCACAAGAATCTTGTTTTGTTCTTTGAGTCTCCCGAAAAGCCTTTCATAGAAAAATTCATCAACCCTCATAAGGAGCAGATTCCTGGATTGTTGGAGTTGTATGAAGAGAAATTAATGGATTCTAGAAGATGA

mRNA sequence

ATGCTTGGAAGTGAGGAGAAGACTCTCGTTGCCATAAAGCGCTTTGCGGGTATTCTCACTTGGGATCTTCGAATTTCAGCTGGTCCCAGTATTGAAATTCTGAAACAAAGTGGTGTGCCGGATTCAAATATTTTAAAATATCTTCAGTTCCAGCCTAGACTGTTCTTGACAAATCCCATCCGATTCAAGGAGAGTGTAGAGAGAGTTACGGAAATGGGATTCAACCCTCAACAAATGCAGTTTCTTGTTGCTGTGTTTGCTCTGCGTTCAATGACCAAATCTACGTGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTGTCTGAAGAAGAGGTCCGTTTAGCATTTAGAAGGTATCCATGGTGTATGATAGCTTCTGAGGATAAGATTAATGATGTAATGGATTTTTTTGTCAACAAAATTGGATGCGAATCATCTTTCGCTGCTAGAAGACCAATTTTAATTTACCGTAGTTTGAAGAAGAGGATTTTGCCTAGAGGCTACGTTTATCAAGTTTTGCTGTCAAAGGGTTTGATTAAGAATCACAAGAATCTTGTTTTGTTCTTTGAGTCTCCCGAAAAGCCTTTCATAGAAAAATTCATCAACCCTCATAAGGAGCAGATTCCTGGATTGTTGGAGTTGTATGAAGAGAAATTAATGGATTCTAGAAGATGA

Coding sequence (CDS)

ATGCTTGGAAGTGAGGAGAAGACTCTCGTTGCCATAAAGCGCTTTGCGGGTATTCTCACTTGGGATCTTCGAATTTCAGCTGGTCCCAGTATTGAAATTCTGAAACAAAGTGGTGTGCCGGATTCAAATATTTTAAAATATCTTCAGTTCCAGCCTAGACTGTTCTTGACAAATCCCATCCGATTCAAGGAGAGTGTAGAGAGAGTTACGGAAATGGGATTCAACCCTCAACAAATGCAGTTTCTTGTTGCTGTGTTTGCTCTGCGTTCAATGACCAAATCTACGTGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTGTCTGAAGAAGAGGTCCGTTTAGCATTTAGAAGGTATCCATGGTGTATGATAGCTTCTGAGGATAAGATTAATGATGTAATGGATTTTTTTGTCAACAAAATTGGATGCGAATCATCTTTCGCTGCTAGAAGACCAATTTTAATTTACCGTAGTTTGAAGAAGAGGATTTTGCCTAGAGGCTACGTTTATCAAGTTTTGCTGTCAAAGGGTTTGATTAAGAATCACAAGAATCTTGTTTTGTTCTTTGAGTCTCCCGAAAAGCCTTTCATAGAAAAATTCATCAACCCTCATAAGGAGCAGATTCCTGGATTGTTGGAGTTGTATGAAGAGAAATTAATGGATTCTAGAAGATGA

Protein sequence

MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPIRFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRYPWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLIKNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR

Homology

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BLAST of IVF0017798 vs. ExPASy TrEMBL
Match: A0A5A7U0W3 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00790 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 2.5e-124
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI
Sbjct: 141 MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 200

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY
Sbjct: 201 RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 260

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI
Sbjct: 261 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 320

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 226
           KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR
Sbjct: 321 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 365

[Close]

BLAST of IVF0017798 vs. ExPASy TrEMBL
Match: A0A1S3AZA9 (uncharacterized protein LOC103484198 OS=Cucumis melo OX=3656 GN=LOC103484198 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 2.5e-124
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI
Sbjct: 27  MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 86

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY
Sbjct: 87  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 146

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI
Sbjct: 147 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 206

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 226
           KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR
Sbjct: 207 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 251

[Close]

BLAST of IVF0017798 vs. ExPASy TrEMBL
Match: A0A1S4DSL1 (uncharacterized protein LOC103483826 OS=Cucumis melo OX=3656 GN=LOC103483826 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.1e-102
Identity = 184/225 (81.78%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           + GSEEKTL+ IKRFAGIL WDLRIS GP+IEILKQ GVPDSNI KYLQ+QPR+FL NP+
Sbjct: 141 VFGSEEKTLITIKRFAGILAWDLRISVGPNIEILKQIGVPDSNIFKYLQYQPRVFLINPV 200

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKE+VERV EMGFNPQQ+QF+VAVF LR+MTKSTWDKKVEVYRKWGLSEEE+R+AFR+ 
Sbjct: 201 RFKEAVERVKEMGFNPQQLQFVVAVFILRAMTKSTWDKKVEVYRKWGLSEEEIRIAFRKS 260

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           P CM  SEDKIN VMDFFVNK+GCESSFAARRPIL+  SLKKRILPRGY+YQVLLSKGLI
Sbjct: 261 PLCMAFSEDKINGVMDFFVNKLGCESSFAARRPILLSLSLKKRILPRGYIYQVLLSKGLI 320

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 226
           K H+NL  FFESPEK FIEKFINPH EQI GLLELYEEKL D RR
Sbjct: 321 KKHENLAWFFESPEKRFIEKFINPHTEQISGLLELYEEKLKDYRR 365

[Close]

BLAST of IVF0017798 vs. ExPASy TrEMBL
Match: A0A5D3CY08 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00850 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.4e-101
Identity = 183/225 (81.33%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           + GSEEKTL+ IKRFAGIL WDLRIS GP+IEILKQ GVPDSNI KYLQ+QPR+FL NP+
Sbjct: 374 VFGSEEKTLITIKRFAGILAWDLRISVGPNIEILKQIGVPDSNIFKYLQYQPRVFLINPV 433

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKE+VERV EMGFNPQQ+QF+VAVF LR+MT+STWDKKVEVYRKWGLSEEE+R+AFR+ 
Sbjct: 434 RFKEAVERVKEMGFNPQQLQFVVAVFILRAMTRSTWDKKVEVYRKWGLSEEEIRIAFRKS 493

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           P CM  SEDKIN VMDFFVNK+GCESSFAARRPIL+  SLKKRILPRGY+YQVLLSKGLI
Sbjct: 494 PLCMAFSEDKINGVMDFFVNKLGCESSFAARRPILLSLSLKKRILPRGYIYQVLLSKGLI 553

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 226
           K H+NL  FFESPEK FIEKFINPH EQI GLLELYEEKL D RR
Sbjct: 554 KKHENLAWFFESPEKRFIEKFINPHTEQISGLLELYEEKLKDYRR 598

[Close]

BLAST of IVF0017798 vs. ExPASy TrEMBL
Match: A0A5A7U0V4 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00670 PE=3 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.7e-99
Identity = 182/223 (81.61%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           +LGSEEKTL AIK+FAGIL  DLRIS GP+IEILKQ+GVPDSNILKYLQ+QPR+FLT+ I
Sbjct: 469 VLGSEEKTLAAIKQFAGILAQDLRISVGPNIEILKQNGVPDSNILKYLQYQPRVFLTSSI 528

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKE VERV EMGFNPQQ+QF+VAVFALR+MTKSTWDKKVEVYRKWGLSEEE+ LAFRR+
Sbjct: 529 RFKEIVERVAEMGFNPQQLQFVVAVFALRAMTKSTWDKKVEVYRKWGLSEEEICLAFRRH 588

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           PWCM+ SEDKIN  MDFFVNK+GCESSFAARRP+++  SLKKRILPRGYVYQVLLSKGLI
Sbjct: 589 PWCMMVSEDKINGAMDFFVNKMGCESSFAARRPLVLSLSLKKRILPRGYVYQVLLSKGLI 648

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDS 224
           K H NL LFF S E  FIEKFINPHKEQIPGLLELYE+   DS
Sbjct: 649 KKHGNLHLFFGSSEHRFIEKFINPHKEQIPGLLELYEQMRTDS 691

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BLAST of IVF0017798 vs. NCBI nr
Match: XP_008439383.1 (PREDICTED: uncharacterized protein LOC103484198 [Cucumis melo])

HSP 1 Score: 455 bits (1171), Expect = 3.55e-161
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI
Sbjct: 27  MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 86

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY
Sbjct: 87  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 146

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI
Sbjct: 147 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 206

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 225
           KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR
Sbjct: 207 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 251

[Close]

BLAST of IVF0017798 vs. NCBI nr
Match: KAA0049473.1 (transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16152.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 455 bits (1171), Expect = 2.11e-159
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI
Sbjct: 141 MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 200

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY
Sbjct: 201 RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 260

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI
Sbjct: 261 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 320

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 225
           KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR
Sbjct: 321 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 365

[Close]

BLAST of IVF0017798 vs. NCBI nr
Match: XP_016898974.1 (PREDICTED: uncharacterized protein LOC103483826 [Cucumis melo])

HSP 1 Score: 381 bits (978), Expect = 4.80e-130
Identity = 184/225 (81.78%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           + GSEEKTL+ IKRFAGIL WDLRIS GP+IEILKQ GVPDSNI KYLQ+QPR+FL NP+
Sbjct: 141 VFGSEEKTLITIKRFAGILAWDLRISVGPNIEILKQIGVPDSNIFKYLQYQPRVFLINPV 200

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKE+VERV EMGFNPQQ+QF+VAVF LR+MTKSTWDKKVEVYRKWGLSEEE+R+AFR+ 
Sbjct: 201 RFKEAVERVKEMGFNPQQLQFVVAVFILRAMTKSTWDKKVEVYRKWGLSEEEIRIAFRKS 260

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           P CM  SEDKIN VMDFFVNK+GCESSFAARRPIL+  SLKKRILPRGY+YQVLLSKGLI
Sbjct: 261 PLCMAFSEDKINGVMDFFVNKLGCESSFAARRPILLSLSLKKRILPRGYIYQVLLSKGLI 320

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 225
           K H+NL  FFESPEK FIEKFINPH EQI GLLELYEEKL D RR
Sbjct: 321 KKHENLAWFFESPEKRFIEKFINPHTEQISGLLELYEEKLKDYRR 365

[Close]

BLAST of IVF0017798 vs. NCBI nr
Match: KAA0049478.1 (transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16158.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 380 bits (975), Expect = 2.21e-126
Identity = 183/225 (81.33%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           + GSEEKTL+ IKRFAGIL WDLRIS GP+IEILKQ GVPDSNI KYLQ+QPR+FL NP+
Sbjct: 374 VFGSEEKTLITIKRFAGILAWDLRISVGPNIEILKQIGVPDSNIFKYLQYQPRVFLINPV 433

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKE+VERV EMGFNPQQ+QF+VAVF LR+MT+STWDKKVEVYRKWGLSEEE+R+AFR+ 
Sbjct: 434 RFKEAVERVKEMGFNPQQLQFVVAVFILRAMTRSTWDKKVEVYRKWGLSEEEIRIAFRKS 493

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           P CM  SEDKIN VMDFFVNK+GCESSFAARRPIL+  SLKKRILPRGY+YQVLLSKGLI
Sbjct: 494 PLCMAFSEDKINGVMDFFVNKLGCESSFAARRPILLSLSLKKRILPRGYIYQVLLSKGLI 553

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 225
           K H+NL  FFESPEK FIEKFINPH EQI GLLELYEEKL D RR
Sbjct: 554 KKHENLAWFFESPEKRFIEKFINPHTEQISGLLELYEEKLKDYRR 598

[Close]

BLAST of IVF0017798 vs. NCBI nr
Match: XP_031738562.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucumis sativus] >KAE8650385.1 hypothetical protein Csa_011708 [Cucumis sativus])

HSP 1 Score: 370 bits (949), Expect = 1.18e-125
Identity = 181/225 (80.44%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           +LGSE KTL AIKR A IL WD +IS GP+IEILKQ GVPDSNILKYL +QPR+FLTN I
Sbjct: 141 VLGSE-KTLAAIKRSADILFWDFQISVGPNIEILKQIGVPDSNILKYLHYQPRVFLTNSI 200

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRY 120
           RFKE+VERVTEMGFNP+ + F++AVFALRSMTKSTWDKKVEVYR WGLSEEE+ LAFRR 
Sbjct: 201 RFKETVERVTEMGFNPRGLLFVIAVFALRSMTKSTWDKKVEVYRNWGLSEEEIHLAFRRN 260

Query: 121 PWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI 180
           PWCMIASEDKIN  MDF+VNK+GC+SSFAARRP+L+  SLKKRILPRGYVYQVLLSKGLI
Sbjct: 261 PWCMIASEDKINGAMDFYVNKMGCDSSFAARRPVLLQLSLKKRILPRGYVYQVLLSKGLI 320

Query: 181 KNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 225
           K  +N+ L FESPEK FIEK+INPHKEQIPGLLELYE+KLMDSRR
Sbjct: 321 KKTENICLLFESPEKRFIEKYINPHKEQIPGLLELYEQKLMDSRR 364

[Close]

BLAST of IVF0017798 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-39
Identity = 80/217 (36.87%), Postives = 131/217 (60.37%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPI 60
           +L S+EK + A++R   +   D   +  P+I  + ++GVP+  I   L   P   +    
Sbjct: 183 VLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNH 242

Query: 61  RFKESVERVTEMGFNPQQMQFLVAVFALRSM-TKSTWDKKVEVYRKWGLSEEEVRLAFRR 120
            F+   ++  EMGFNPQ+  F++A+ AL     KS WDK  EVY++WG SE+++  AF++
Sbjct: 243 EFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKK 302

Query: 121 YPWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGL 180
           +P CM+ SE KIN  M++FVN++       A+ P++++ SL+KRI+PR  V +VL+S GL
Sbjct: 303 HPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGL 362

Query: 181 IKNHKNLVLFFESPEKPFIEKFINPHKEQIPGLLELY 217
           +K   +L       EK F+EK +  ++E++P L+ LY
Sbjct: 363 VKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

[Close]

BLAST of IVF0017798 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 122.5 bits (306), Expect = 4.4e-28
Identity = 68/217 (31.34%), Postives = 124/217 (57.14%), Query Frame = 0


Query: 1   MLGSEEKTLVAIKRFAGILTWDLRISAGPS--IEILKQSGVPDSNILKYLQFQPRLFLTN 60
           +L  EE  +  +KR  GI  + L+I+   S  + I ++ GVPD +I   +Q  P  F + 
Sbjct: 170 ILVEEESVVKCLKR--GIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSR 229

Query: 61  PIRFKESVERVTEMGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFR 120
             RF E + RV   GF+P++  F+ A+ A    ++S  ++K ++++ +G S+E+   A  
Sbjct: 230 ERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIM 289

Query: 121 RYPWCMIASEDKINDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKG 180
           R+P C+  S++KI   +++ VN IG ++     RP+++  S++KRI PR  V  +LLSKG
Sbjct: 290 RFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKG 349

Query: 181 LIKNHK-NLVLFFESPEKPFIEKFINPHKEQIPGLLE 215
           L+K    N     +     F++KF+  +++++P L++
Sbjct: 350 LVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQ 384

[Close]

BLAST of IVF0017798 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-25
Identity = 61/189 (32.28%), Postives = 108/189 (57.14%), Query Frame = 0


Query: 18  ILTWDLRISAGPSIEILKQSGVPDSNILKYLQFQPRLFLTNPIRFKESVERVTEMGFNPQ 77
           +L+ D  +   P+I  L+  G+  S +   L+ QPR+F  +  + +  V R  ++GF   
Sbjct: 172 LLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLN 231

Query: 78  QMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRYPWCMIASEDKINDVMDF 137
               + AV +L S+++ T+D+KV+++   G SE+E+    RR P  +  SEDK+    +F
Sbjct: 232 SRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEF 291

Query: 138 FVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLI----KNHKNLVLFFESP 197
           ++ ++G E    A+RP ++  +L+KR++PR  V Q+L  KGL+    K  KN+V   E  
Sbjct: 292 YLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMT 351

Query: 198 EKPFIEKFI 203
           E+ F+EK++
Sbjct: 352 EEAFLEKYV 360

[Close]

BLAST of IVF0017798 vs. TAIR 10
Match: AT5G23930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-16
Identity = 63/257 (24.51%), Postives = 115/257 (44.75%), Query Frame = 0


Query: 30  SIEILKQSGVPDSNILKYLQFQPRLFLTNPIRFKESVERVTEMGFNPQQMQFLVAVFALR 89
           ++ +L++ GVP   +L  L  + +  +    RF+ESV+++ EMGF+P+  +F+ A++   
Sbjct: 190 NVSVLRKLGVPQRLLLNLLISRAKP-VCGKERFEESVKKIVEMGFDPKSPKFVNALYVFY 249

Query: 90  SMTKSTWDKKVE--------------VYRKW---------------------GLSEEEVR 149
            ++  T ++KV               V++KW                     GL++EEV 
Sbjct: 250 ELSDKTIEEKVNAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFETLKRVGLTKEEVC 309

Query: 150 LAFRRYPWCMIASEDKI--------------NDVM---------------------DFFV 209
           L  ++YP C+  SE+KI              ++V+                     +F V
Sbjct: 310 LVVKKYPECVGTSEEKIVKSVKTFLELGFTKDEVLMIIKRHPQCIGLAADSVKKKTEFLV 369

Query: 210 NKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLIKNHKNLVLFFESPEKPFIE 217
             +G      A  PI++  SL+K +LPR  V + L+S GLI     +     SP+  F++
Sbjct: 370 KTMGWPLKVVASTPIVLGFSLEKFVLPRCNVIKALMSNGLIGEMPAISSVLTSPKLKFLK 429

[Close]

BLAST of IVF0017798 vs. TAIR 10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.6 bits (192), Expect = 7.3e-15
Identity = 58/260 (22.31%), Postives = 118/260 (45.38%), Query Frame = 0


Query: 30  SIEILKQSGVPDSNILKYL--QFQPRLFLTNPIRFKESVERVTEMGFNPQQMQFLVAVFA 89
           +I +L++ GVP   +   L  ++QP   +    +F+ES+++V +MGF+P + +F+ A+  
Sbjct: 188 NISVLRELGVPQKLLFSLLISRYQP---VCGKEKFEESLKKVVDMGFDPAKSKFVEALHV 247

Query: 90  LRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRYPW------------------------- 149
           +  M++ T ++KV VY++ G SE E+   F+++P+                         
Sbjct: 248 VYEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKKCGLVEEE 307

Query: 150 ----------CMIASEDKINDVMDFF-------------VNKIGCESSFAARR------- 209
                     C+ +SE KI D ++ F             V +  C ++++          
Sbjct: 308 IISVLKSRPQCIRSSEQKILDSIEMFLGLGFSRDDFKMMVKRYPCCTAYSGETLRKKFEV 367

Query: 210 ---------------PILIYRSLKKRILPRGYVYQVLLSKGLI-KNHKNLVLFFESPEKP 217
                          P ++  SL+KRI+PR  V + L+SKGLI   +  +       ++ 
Sbjct: 368 LVKMMNWPLEAVVMIPTVLGYSLEKRIVPRSNVIKALMSKGLIGSENPPISSVLVCTDQE 427

The following BLAST results are available for this feature:

BLAST of IVF0017798 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0W3	2.5e-124	100.00	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3AZA9	2.5e-124	100.00	uncharacterized protein LOC103484198 OS=Cucumis melo OX=3656 GN=LOC103484198 PE=...	[more]
A0A1S4DSL1	6.1e-102	81.78	uncharacterized protein LOC103483826 OS=Cucumis melo OX=3656 GN=LOC103483826 PE=...	[more]
A0A5D3CY08	1.4e-101	81.33	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7U0V4	3.7e-99	81.61	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of IVF0017798 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439383.1	3.55e-161	100.00	PREDICTED: uncharacterized protein LOC103484198 [Cucumis melo]	[more]
KAA0049473.1	2.11e-159	100.00	transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16152.1 tr...	[more]
XP_016898974.1	4.80e-130	81.78	PREDICTED: uncharacterized protein LOC103483826 [Cucumis melo]	[more]
KAA0049478.1	2.21e-126	81.33	transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK16158.1 tr...	[more]
XP_031738562.1	1.18e-125	80.44	transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucum...	[more]

BLAST of IVF0017798 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	7.2e-39	36.87	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	4.4e-28	31.34	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	2.0e-25	32.28	Mitochondrial transcription termination factor family protein	[more]
AT5G23930.1	6.6e-16	24.51	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	7.3e-15	22.31	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 146..180 e-value: 270.0 score: 8.3 coord: 114..145 e-value: 0.075 score: 22.2 coord: 45..75 e-value: 560.0 score: 5.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 27..183 e-value: 8.8E-15 score: 54.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 2..222
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 2..210 e-value: 7.7E-40 score: 138.7
None	No IPR available	PANTHER	PTHR13068:SF160	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 2..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017798.2	IVF0017798.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding