IVF0017787 (gene) Melon (IVF77) v1

Overview


Name	IVF0017787
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Zf-CCHC domain-containing protein
Location	chr07: 17741991 .. 17742254 (-)
RNA-Seq Expression	IVF0017787
Synteny	IVF0017787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGCCGGAGAGGAAACAACCCAACCGCGAGGGATAACCGCGAGCAAGAAGAGGTGGAGGAAATTGCCACCCTCTCTCCAAGGACATCTACGGTACGCTTGTTGGCCGTTGAAGACTCCCTGGGAGATTTGCACGGAAAGACCAATAGAATGATGGATTACCTGGAAGCGCTGACCCGAAGGATGGATAAACTACCAGCCCCAGCAAGGATTGAAGCCTATGCTCGAAATGATGGAAATAGAGGGGGTCGATGGGTATGA

mRNA sequence

ATGGCTAGCCGGAGAGGAAACAACCCAACCGCGAGGGATAACCGCGAGCAAGAAGAGGTGGAGGAAATTGCCACCCTCTCTCCAAGGACATCTACGGTACGCTTGTTGGCCGTTGAAGACTCCCTGGGAGATTTGCACGGAAAGACCAATAGAATGATGGATTACCTGGAAGCGCTGACCCGAAGGATGGATAAACTACCAGCCCCAGCAAGGATTGAAGCCTATGCTCGAAATGATGGAAATAGAGGGGGTCGATGGGTATGA

Coding sequence (CDS)

ATGGCTAGCCGGAGAGGAAACAACCCAACCGCGAGGGATAACCGCGAGCAAGAAGAGGTGGAGGAAATTGCCACCCTCTCTCCAAGGACATCTACGGTACGCTTGTTGGCCGTTGAAGACTCCCTGGGAGATTTGCACGGAAAGACCAATAGAATGATGGATTACCTGGAAGCGCTGACCCGAAGGATGGATAAACTACCAGCCCCAGCAAGGATTGAAGCCTATGCTCGAAATGATGGAAATAGAGGGGGTCGATGGGTATGA

Protein sequence

MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALTRRMDKLPAPARIEAYARNDGNRGGRWV

Homology

[Close]

BLAST of IVF0017787 vs. ExPASy TrEMBL
Match: A0A5A7V462 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001440 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.7e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
          MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT
Sbjct: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60

Query: 61 RRMDKLPAPARIEAYARNDGNRGGRW 87
          RRMDKLPAPARIEAYARNDGNRGGRW
Sbjct: 61 RRMDKLPAPARIEAYARNDGNRGGRW 86

[Close]

BLAST of IVF0017787 vs. ExPASy TrEMBL
Match: A0A5D3D0X3 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.8e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
          MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT
Sbjct: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60

Query: 61 RRMDKLPAPARIEAYARNDGNRGGRW 87
          RRMDKLPAPARI+AYARNDGNRGGRW
Sbjct: 61 RRMDKLPAPARIKAYARNDGNRGGRW 86

[Close]

BLAST of IVF0017787 vs. ExPASy TrEMBL
Match: A0A5A7V4G7 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00370 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 16  EQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALTRRMDKLPAPARIEAY 75
           EQEEVEEIATLS RTSTVRLLAVEDSLGDLHGK +RMMDYL+ALTRRM++LPAPARI+AY
Sbjct: 43  EQEEVEEIATLSLRTSTVRLLAVEDSLGDLHGKIDRMMDYLDALTRRMNELPAPARIKAY 102

Query: 76  ARNDGNRGGRWV 88
           AR DGNRG RWV
Sbjct: 103 ARIDGNRGSRWV 114

[Close]

BLAST of IVF0017787 vs. ExPASy TrEMBL
Match: A0A5A7UQ86 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001990 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-24
Identity = 67/88 (76.14%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
          MA RRG  P A DNREQEEVE IATLSPRTSTVRLLAV+D LGDLH K NRMMD LE LT
Sbjct: 1  MADRRGGIPAAGDNREQEEVEAIATLSPRTSTVRLLAVKDFLGDLHEKFNRMMDNLETLT 60

Query: 61 RRMDKLPAPARIEA---YARNDGNRGGR 86
          +RMD LPAPARIEA     RN+ NRGGR
Sbjct: 61 QRMDGLPAPARIEANMNIDRNERNRGGR 88

[Close]

BLAST of IVF0017787 vs. ExPASy TrEMBL
Match: A0A5D3CLX2 (DExH-box ATP-dependent RNA helicase DExH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00630 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 64/85 (75.29%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1   MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
           M  RRG  P   DNREQEEVEEI TLSPRTSTV LLAVEDSLGDLH K +R+MD LE LT
Sbjct: 232 MVDRRGGIPAVGDNREQEEVEEITTLSPRTSTVCLLAVEDSLGDLHVKFDRVMDSLETLT 291

Query: 61  RRMDKLPAPARIEAYARNDGNRGGR 86
           RRMD LPA ARIEA  R D NRGGR
Sbjct: 292 RRMDGLPAQARIEANDRVDRNRGGR 316

[Close]

BLAST of IVF0017787 vs. NCBI nr
Match: KAA0063032.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 1.98e-49
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
          MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT
Sbjct: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60

Query: 61 RRMDKLPAPARIEAYARNDGNRGGRW 86
          RRMDKLPAPARIEAYARNDGNRGGRW
Sbjct: 61 RRMDKLPAPARIEAYARNDGNRGGRW 86

[Close]

BLAST of IVF0017787 vs. NCBI nr
Match: TYK16316.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (426), Expect = 7.84e-49
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
          MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT
Sbjct: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60

Query: 61 RRMDKLPAPARIEAYARNDGNRGGRW 86
          RRMDKLPAPARI+AYARNDGNRGGRW
Sbjct: 61 RRMDKLPAPARIKAYARNDGNRGGRW 86

[Close]

BLAST of IVF0017787 vs. NCBI nr
Match: KAA0062943.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 1.49e-30
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 16  EQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALTRRMDKLPAPARIEAY 75
           EQEEVEEIATLS RTSTVRLLAVEDSLGDLHGK +RMMDYL+ALTRRM++LPAPARI+AY
Sbjct: 43  EQEEVEEIATLSLRTSTVRLLAVEDSLGDLHGKIDRMMDYLDALTRRMNELPAPARIKAY 102

Query: 76  ARNDGNRGGRWV 87
           AR DGNRG RWV
Sbjct: 103 ARIDGNRGSRWV 114

[Close]

BLAST of IVF0017787 vs. NCBI nr
Match: KAA0057344.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 2.38e-28
Identity = 67/88 (76.14%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
          MA RRG  P A DNREQEEVE IATLSPRTSTVRLLAV+D LGDLH K NRMMD LE LT
Sbjct: 1  MADRRGGIPAAGDNREQEEVEAIATLSPRTSTVRLLAVKDFLGDLHEKFNRMMDNLETLT 60

Query: 61 RRMDKLPAPARIEAYA---RNDGNRGGR 85
          +RMD LPAPARIEA     RN+ NRGGR
Sbjct: 61 QRMDGLPAPARIEANMNIDRNERNRGGR 88

[Close]

BLAST of IVF0017787 vs. NCBI nr
Match: TYK11219.1 (DExH-box ATP-dependent RNA helicase DExH7 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 1.01e-27
Identity = 64/85 (75.29%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1   MASRRGNNPTARDNREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHGKTNRMMDYLEALT 60
           M  RRG  P   DNREQEEVEEI TLSPRTSTV LLAVEDSLGDLH K +R+MD LE LT
Sbjct: 232 MVDRRGGIPAVGDNREQEEVEEITTLSPRTSTVCLLAVEDSLGDLHVKFDRVMDSLETLT 291

Query: 61  RRMDKLPAPARIEAYARNDGNRGGR 85
           RRMD LPA ARIEA  R D NRGGR
Sbjct: 292 RRMDGLPAQARIEANDRVDRNRGGR 316

The following BLAST results are available for this feature:

BLAST of IVF0017787 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V462	9.7e-40	100.00	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D0X3	2.8e-39	98.84	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V4G7	1.0e-25	87.50	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UQ86	7.5e-24	76.14	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CLX2	1.1e-22	75.29	DExH-box ATP-dependent RNA helicase DExH7 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of IVF0017787 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063032.1	1.98e-49	100.00	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK16316.1	7.84e-49	98.84	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0062943.1	1.49e-30	87.50	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0057344.1	2.38e-28	76.14	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
TYK11219.1	1.01e-27	75.29	DExH-box ATP-dependent RNA helicase DExH7 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0017787 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017787.1	IVF0017787.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding