IVF0017700 (gene) Melon (IVF77) v1

Overview
NameIVF0017700
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 27924397 .. 27924905 (+)
RNA-Seq ExpressionIVF0017700
SyntenyIVF0017700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCCCTCTTTCGCCTTTAAACTGCCATCAAAACTCTCATCCGATCCAACGATGGCGATGCCTTCAGGATCAGCCATCCATGTATTATGGACCCACAGACAACCTTGCCGTTGAAAAAGTTTCGGATTTTTTTTTTTTCTTGGGTTTTCAGTCACAATTGGCAGCCCGGAAAGAAACGGATAGTTTCATCATTTTTTTCGATACGAAAATCGATTGGAGAGAGACACTGAGATTTTCGCGGTGAAATTAAACGCTGGAATTCCGGGTACGTTTTAATTTCTTCGTATCTTTAAAGGGATTTCGGGTTCTGCTGTGTTCTTCTTTCGGACAATGATCGTGGGTACTTTTTCTTAATCGAAAATTTGATCATAATCTTGTCAGTTTTTTTGTTTGGGGATGTGATTTTATCGATCTAGACTGATATTTGGTGTTTCGTTGCCTTGTTTGACTTTTGATGTAGTGACCAGAAATTTTCAATTTGTAGGCTGGGGAATTTGGCTTTGA

mRNA sequence

ATGGATTTCCCTCTTTCGCCTTTAAACTGCCATCAAAACTCTCATCCGATCCAACGATGGCGATGCCTTCAGGATCAGCCATCCATGTATTATGGACCCACAGACAACCTTGCCGTTGAAAAAGTTTCGGATTTTTTTTTTTTCTTGGGTTTTCAGTCACAATTGGCAGCCCGGAAAGAAACGGATAGTTTCATCATTTTTTTCGATACGAAAATCGATTGGAGAGAGACACTGAGATTTTCGCGAAATTTTCAATTTGTAGGCTGGGGAATTTGGCTTTGA

Coding sequence (CDS)

ATGGATTTCCCTCTTTCGCCTTTAAACTGCCATCAAAACTCTCATCCGATCCAACGATGGCGATGCCTTCAGGATCAGCCATCCATGTATTATGGACCCACAGACAACCTTGCCGTTGAAAAAGTTTCGGATTTTTTTTTTTTCTTGGGTTTTCAGTCACAATTGGCAGCCCGGAAAGAAACGGATAGTTTCATCATTTTTTTCGATACGAAAATCGATTGGAGAGAGACACTGAGATTTTCGCGAAATTTTCAATTTGTAGGCTGGGGAATTTGGCTTTGA

Protein sequence

MDFPLSPLNCHQNSHPIQRWRCLQDQPSMYYGPTDNLAVEKVSDFFFFLGFQSQLAARKETDSFIIFFDTKIDWRETLRFSRNFQFVGWGIWL
Homology
[Close]
BLAST of IVF0017700 vs. ExPASy TrEMBL
Match: A0A0A0LBJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816130 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 53/95 (55.79%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 1  MDFPLSPLNCHQNSHPIQRWRCLQDQPSMYYGPTDNLAVEKVSDFFFFLGFQSQLAARKE 60
          MDFPLSPLN H +SH IQRWRCLQDQPSMY GPTDNLAVEKVSDFF ++   +    RK 
Sbjct: 1  MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR 60

Query: 61 TDSFIIFFDTKIDWRETLRF--SRNFQFVGWGIWL 94
            S    ++ +++ R+T  F    N    GW IWL
Sbjct: 61 IVSSFFRYENRLE-RDTEIFVVKLNAGIPGWEIWL 94

[Close]
BLAST of IVF0017700 vs. NCBI nr
Match: KGN59400.1 (hypothetical protein Csa_001971 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 4.54e-24
Identity = 53/95 (55.79%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 1  MDFPLSPLNCHQNSHPIQRWRCLQDQPSMYYGPTDNLAVEKVSDFFFFLGFQSQLAARKE 60
          MDFPLSPLN H +SH IQRWRCLQDQPSMY GPTDNLAVEKVSDFF ++   +    RK 
Sbjct: 1  MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR 60

Query: 61 TDSFIIFFDTKIDWRETLRF--SRNFQFVGWGIWL 93
            S    ++ +++ R+T  F    N    GW IWL
Sbjct: 61 IVSSFFRYENRLE-RDTEIFVVKLNAGIPGWEIWL 94

[Close]
BLAST of IVF0017700 vs. NCBI nr
Match: KAG7027726.1 (Protein EFR3-like B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 4.02e-06
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 17 IQRWRCLQDQPSMYYGPTDNLAVEKVSDFFFFL 49
          IQ+WRCLQ+QPS++ GPTDNLAVEKV D F ++
Sbjct: 2  IQQWRCLQNQPSLHCGPTDNLAVEKVGDSFLYV 34

The following BLAST results are available for this feature:
BLAST of IVF0017700 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBJ92.9e-1855.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816130 PE=4 SV=1[more]
BLAST of IVF0017700 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59400.14.54e-2455.79hypothetical protein Csa_001971 [Cucumis sativus][more]
KAG7027726.14.02e-0669.70Protein EFR3-like B, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of IVF0017700 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017700.1IVF0017700.1mRNA