IVF0017611 (gene) Melon (IVF77) v1

Overview
NameIVF0017611
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 25392702 .. 25393472 (-)
RNA-Seq ExpressionIVF0017611
SyntenyIVF0017611
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACCCTTCTAGAAAAGGCCTCATCTTTTTTACTTAAGACCCCAATAAATTCACTACCCATATGTCAAAATCACTGCTTTTTCCTCATCAAAGTTTGATGAATGGCCTTGACTGATTGAATTGGAGGAACGTGAACAAAAATGGCCAGATATGAAGTAAGTTTTAATGTGTAGGAAAGTGGTGGAAGCAGCTGTTAGATGAATGTTTTGTTATCCAAACAAGTCAGCAATGGATCGATCTTGTCATGCCTGCCATATGCTCTGATCACATAGCTTTTCAGGTATATGTTTGTGATGTTGTACAATATTATGTTTAGTTATTATCCAATAGTTTGATTTGCTGTGTTGATTATGGATTTGATACAATCTTGTGGATGCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCATAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCGGCTTATATTTCTCTTTGTACCACCACTTAATTACCTGAAAGTGTCCACTCCACTGCCCATTCAAATTTTCTCATCTTAAAATATAAGTACAGCGTAGTTCTTTTCTTGAATTTTGATGTTACATGTCACGAGGGTCTTGTCCATAACTCTATATTTGTCACTTAAGCAGGATCTCATTAGTTTTTCCAGCAGGGATTCTTCATTTGTTCAATAATTTGTGAGATTTTAAATATTAGTTAACAACCCACTTAAGAATTTGATTATGTAAGTACCA

mRNA sequence

GAACCCTTCTAGAAAAGGCCTCATCTTTTTTACTTAAGACCCCAATAAATTCACTACCCATATGTCAAAATCACTGCTTTTTCCTCATCAAAGTTTGATGAATGGCCTTGACTGATTGAATTGGAGGAACGTGAACAAAAATGGCCAGATATGAAGTAAGTTTTAATGTGTAGGAAAGTGGTGGAAGCAGCTGTTAGATGAATGTTTTGTTATCCAAACAAGTCAGCAATGGATCGATCTTGTCATGCCTGCCATATGCTCTGATCACATAGCTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCATAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCGGCTTATATTTCTCTTTGTACCACCACTTAATTACCTGAAAGTGTCCACTCCACTGCCCATTCAAATTTTCTCATCTTAAAATATAAGTACAGCGTAGTTCTTTTCTTGAATTTTGATGTTACATGTCACGAGGGTCTTGTCCATAACTCTATATTTGTCACTTAAGCAGGATCTCATTAGTTTTTCCAGCAGGGATTCTTCATTTGTTCAATAATTTGTGAGATTTTAAATATTAGTTAACAACCCACTTAAGAATTTGATTATGTAAGTACCA

Coding sequence (CDS)

ATGCCTGCCATATGCTCTGATCACATAGCTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCATAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCGGCTTATATTTCTCTTTGTACCACCACTTAATTACCTGA

Protein sequence

MPAICSDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSGLYFSLYHHLIT
Homology
[Close]
BLAST of IVF0017611 vs. ExPASy TrEMBL
Match: A0A0A0LTA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.5e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPAICSDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSGLYFSLYHH 60
          MPAIC DHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCS LYFSLYHH
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 61 LIT 64
          LIT
Sbjct: 61 LIT 63

[Close]
BLAST of IVF0017611 vs. NCBI nr
Match: KGN63987.1 (hypothetical protein Csa_014108 [Cucumis sativus])

HSP 1 Score: 134 bits (336), Expect = 1.82e-39
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPAICSDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSGLYFSLYHH 60
          MPAIC DHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCS LYFSLYHH
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 61 LIT 63
          LIT
Sbjct: 61 LIT 63

[Close]
BLAST of IVF0017611 vs. NCBI nr
Match: KAG6584453.1 (hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 9.35e-17
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 18 QPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSGLYFSL 57
          QPSFCGV+ KEKTNGIHHSS+MVAEFNAANPTCS LYF L
Sbjct: 7  QPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL 46

The following BLAST results are available for this feature:
BLAST of IVF0017611 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017611 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTA59.5e-2996.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1[more]
BLAST of IVF0017611 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63987.11.82e-3996.83hypothetical protein Csa_014108 [Cucumis sativus][more]
KAG6584453.19.35e-1787.50hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of IVF0017611 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017611.1IVF0017611.1mRNA