IVF0017610 (gene) Melon (IVF77) v1

Overview


Name	IVF0017610
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Formin-like protein 4 isoform X2
Location	chr09: 16499334 .. 16499624 (-)
RNA-Seq Expression	IVF0017610
Synteny	IVF0017610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAATTAAAAACAACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAAGTGAAATATGTAAACGAGTATTGGGTAAGCGGTCGGGGCATGTGAAAGGACAAGGTTGGGGACCAAGACTCAAGAATGCTAGAAATGAAACAATTCAACACAACACAAAAGAAACAAATGCACATATTGCTCATATGCAAAGTATTGTTGAATCACAACAAGCTACAATTGAAGCAATTTTAAGAAGATTATCCTGTCAAGAAGCTACCTCCAACATGGAACGAAGTTCAGAATAA

mRNA sequence

ATGGTGGAATTAAAAACAACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAAGTGAAATATGTAAACGAGTATTGGGTAAGCGGTCGGGGCATGTGAAAGGACAAGGTTGGGGACCAAGACTCAAGAATGCTAGAAATGAAACAATTCAACACAACACAAAAGAAACAAATGCACATATTGCTCATATGCAAAGTATTGTTGAATCACAACAAGCTACAATTGAAGCAATTTTAAGAAGATTATCCTGTCAAGAAGCTACCTCCAACATGGAACGAAGTTCAGAATAA

Coding sequence (CDS)

ATGGTGGAATTAAAAACAACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAAGTGAAATATGTAAACGAGTATTGGGTAAGCGGTCGGGGCATGTGAAAGGACAAGGTTGGGGACCAAGACTCAAGAATGCTAGAAATGAAACAATTCAACACAACACAAAAGAAACAAATGCACATATTGCTCATATGCAAAGTATTGTTGAATCACAACAAGCTACAATTGAAGCAATTTTAAGAAGATTATCCTGTCAAGAAGCTACCTCCAACATGGAACGAAGTTCAGAATAA

Protein sequence

MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAHIAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE

Homology

[Close]

BLAST of IVF0017610 vs. ExPASy TrEMBL
Match: A0A5D3BHT5 (Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001230 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.2e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH
Sbjct: 229 MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 288

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 97
           IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE
Sbjct: 289 IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 324

[Close]

BLAST of IVF0017610 vs. ExPASy TrEMBL
Match: A0A5A7TVR8 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001640 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQEGSEPLLE +IC RVLGKRSGHVKGQGWGPR KNARNETIQHNTK+ NA 
Sbjct: 189 MVELKTTSSQEGSEPLLERKICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKKANAQ 248

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 97
           IAH+QSIVESQQATIEAILRRLSCQEATSNMERSSE
Sbjct: 249 IAHLQSIVESQQATIEAILRRLSCQEATSNMERSSE 284

[Close]

BLAST of IVF0017610 vs. ExPASy TrEMBL
Match: A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQEGSEPLLE +IC RVLGKRSGHVKGQGWGPR KNARNETIQHNTK+ NA 
Sbjct: 206 MVELKTTSSQEGSEPLLERKICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKKANAQ 265

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 97
           IAH+QSIVESQQATIEAILRRLSCQEATSNMERSSE
Sbjct: 266 IAHLQSIVESQQATIEAILRRLSCQEATSNMERSSE 301

[Close]

BLAST of IVF0017610 vs. ExPASy TrEMBL
Match: A0A5D3DBZ5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00730 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQEGSEPLLE EIC RVLGKRSGHVKGQGWGPR KNARNETIQHNTKE NA 
Sbjct: 87  MVELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 146

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 97
           IAH+QSIVESQQATIE ILRRLSCQEATSNME+SSE
Sbjct: 147 IAHLQSIVESQQATIEVILRRLSCQEATSNMEQSSE 182

[Close]

BLAST of IVF0017610 vs. ExPASy TrEMBL
Match: A0A5A7VLG0 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001230 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.1e-39
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 2   VELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAHI 61
           VELKTTSSQEGSEPLLE EIC RVLGKRSGHVKGQGWGPR KNARNETIQHNTKE NA I
Sbjct: 88  VELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI 147

Query: 62  AHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 97
           AH+QSIV SQQATIEAILRRLSCQEATSNMERSSE
Sbjct: 148 AHLQSIVNSQQATIEAILRRLSCQEATSNMERSSE 182

[Close]

BLAST of IVF0017610 vs. NCBI nr
Match: KAA0050188.1 (Transposon, En/Spm-like protein [Cucumis melo var. makuwa] >TYJ98221.1 Transposon, En/Spm-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (473), Expect = 2.47e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH
Sbjct: 229 MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 288

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 96
           IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE
Sbjct: 289 IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 324

[Close]

BLAST of IVF0017610 vs. NCBI nr
Match: TYK21104.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 1.19e-51
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQEGSEPLLE EIC RVLGKRSGHVKGQGWGPR KNARNETIQHNTKE NA 
Sbjct: 87  MVELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 146

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 96
           IAH+QSIVESQQATIE ILRRLSCQEATSNME+SSE
Sbjct: 147 IAHLQSIVESQQATIEVILRRLSCQEATSNMEQSSE 182

[Close]

BLAST of IVF0017610 vs. NCBI nr
Match: KAA0067296.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 2.39e-51
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 2   VELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAHI 61
           VELKTTSSQEGSEPLLE EIC RVLGKRSGHVKGQGWGPR KNARNETIQHNTKE NA I
Sbjct: 88  VELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI 147

Query: 62  AHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 96
           AH+QSIV SQQATIEAILRRLSCQEATSNMERSSE
Sbjct: 148 AHLQSIVNSQQATIEAILRRLSCQEATSNMERSSE 182

[Close]

BLAST of IVF0017610 vs. NCBI nr
Match: KAA0068182.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 1.95e-50
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQE SEPLLE EIC RVLGKRSGHVKGQGWGPR KNARNETIQHNTKE NA 
Sbjct: 87  MVELKTTSSQEWSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 146

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 96
           IAH+QSIVESQQATIE ILRRLSCQEATSNME+SSE
Sbjct: 147 IAHLQSIVESQQATIEVILRRLSCQEATSNMEQSSE 182

[Close]

BLAST of IVF0017610 vs. NCBI nr
Match: KAA0046978.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 2.30e-50
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1   MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 60
           MVELKTTSSQEGSEPLLE +IC RVLGKRSGHVKGQGWGPR KNARNETIQHNTK+ NA 
Sbjct: 189 MVELKTTSSQEGSEPLLERKICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKKANAQ 248

Query: 61  IAHMQSIVESQQATIEAILRRLSCQEATSNMERSSE 96
           IAH+QSIVESQQATIEAILRRLSCQEATSNMERSSE
Sbjct: 249 IAHLQSIVESQQATIEAILRRLSCQEATSNMERSSE 284

The following BLAST results are available for this feature:

BLAST of IVF0017610 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHT5	7.2e-44	100.00	Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TVR8	5.3e-39	91.67	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3C2Z5	5.3e-39	91.67	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3DBZ5	5.3e-39	91.67	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7VLG0	9.1e-39	92.63	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of IVF0017610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050188.1	2.47e-56	100.00	Transposon, En/Spm-like protein [Cucumis melo var. makuwa] >TYJ98221.1 Transposo...	[more]
TYK21104.1	1.19e-51	91.67	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0067296.1	2.39e-51	92.63	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0068182.1	1.95e-50	90.63	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0046978.1	2.30e-50	91.67	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0017610 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017610.1	IVF0017610.1	mRNA