IVF0017601 (gene) Melon (IVF77) v1

Overview


Name	IVF0017601
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Amino acid transporter ANTL1-like
Location	chr06: 2661616 .. 2662131 (-)
RNA-Seq Expression	IVF0017601
Synteny	IVF0017601

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGTTTTTAATTCTCCCAATGTTATGGATTTGAATCCTAAGATTTTGAGATTGACTTTTAAGGTTGCGTATGTTTGGGGTTGTTTCCCTTTTCAATTGGGTTTGAACTTCCCATTCAGACTCTCACCCATTTGGTTCTTTTGAGTATTTTTGCTGATATTGTTGACCTTAGAGCTATGGTGGTGGTGATTGTTAAAGATTTTTTGATTATCTTCAAGCAGAGCCCATATGCGAAGGCTTTTGGGTGATTTTTGTGTTCTTTTATGGAAAGAGTATGGCTGTTTATGCCTTTGAAGGTATTGGGAGATGATGTTGCCTCTAGAATTTGAGACAAAGGACAAAGAGAAATTTGGGAGAGTCATGGGTTTTTCAATGGATTTCATTACTGTTTTATATGGAGCATTTGAAACTCTTTGCTATTTTGCTTTTGGCAAAAATACTAAAGACTTGATCACTAGTAACTTGGGCCTTGGATTTATTAGCACTATTATTAAGTTAGATTCTGTATAA

mRNA sequence

ATGGATGATGTTTTTAATTCTCCCAATGTTATGGATTTGAATCCTAAGATTTTGAGATTGACTTTTAAGGTTGCGTATGTTTGGGGTTGTTTCCCTTTTCAATTGGCAGAGCCCATATGCGAAGGCTTTTGGGTGATTTTTGTGTTCTTTTATGGAAAGAGTATGGCTGTTTATGCCTTTGAAGAGAAATTTGGGAGAGTCATGGGTTTTTCAATGGATTTCATTACTGTTTTATATGGAGCATTTGAAACTCTTTGCTATTTTGCTTTTGGCAAAAATACTAAAGACTTGATCACTAGTAACTTGGGCCTTGGATTTATTAGCACTATTATTAAGTTAGATTCTGTATAA

Coding sequence (CDS)

ATGGATGATGTTTTTAATTCTCCCAATGTTATGGATTTGAATCCTAAGATTTTGAGATTGACTTTTAAGGTTGCGTATGTTTGGGGTTGTTTCCCTTTTCAATTGGCAGAGCCCATATGCGAAGGCTTTTGGGTGATTTTTGTGTTCTTTTATGGAAAGAGTATGGCTGTTTATGCCTTTGAAGAGAAATTTGGGAGAGTCATGGGTTTTTCAATGGATTTCATTACTGTTTTATATGGAGCATTTGAAACTCTTTGCTATTTTGCTTTTGGCAAAAATACTAAAGACTTGATCACTAGTAACTTGGGCCTTGGATTTATTAGCACTATTATTAAGTTAGATTCTGTATAA

Protein sequence

MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLAEPICEGFWVIFVFFYGKSMAVYAFEEKFGRVMGFSMDFITVLYGAFETLCYFAFGKNTKDLITSNLGLGFISTIIKLDSV

Homology

[Close]

BLAST of IVF0017601 vs. ExPASy Swiss-Prot
Match: Q9FKY3 (Amino acid transporter AVT3A OS=Arabidopsis thaliana OX=3702 GN=AVT3A PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-15
Identity = 52/151 (34.44%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 17  ILRLTFKVAYVWGCFPFQLA---------------------------------------E 76
           IL L     Y+WGCFPFQL                                         
Sbjct: 158 ILGLDAASIYLWGCFPFQLGLNSIPSLTHLAPLSIFADIVDVAATLVVMVQDVFIFLKRR 217

Query: 77  PICEGFWVIFVFFYGKSMAVYAFE---------------EKFGRVMGFSMDFITVLYGAF 114
           P    F  + VFFYG  +AVYAFE               +KFGR +G +M  I+++YGAF
Sbjct: 218 PPLRVFGGVSVFFYGLGVAVYAFEGIGMVLPLELEAKYKDKFGRALGLAMGLISIMYGAF 277

[Close]

BLAST of IVF0017601 vs. ExPASy Swiss-Prot
Match: F4ILY9 (Amino acid transporter AVT3B OS=Arabidopsis thaliana OX=3702 GN=AVT3B PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-14
Identity = 53/159 (33.33%), Postives = 73/159 (45.91%), Query Frame = 0


Query: 9   NVMDLNPKILRLTFKVAYVWGCFPFQLA-------------------------------- 68
           ++M ++PK L       Y+WGCFPFQL                                 
Sbjct: 145 HLMGVSPKSL-------YIWGCFPFQLGLNSIKTLTHLAPLSIFADVVDLGAMAVVIVED 204

Query: 69  -------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGRVMGFSMDF 114
                   P    F  + VFFYG  +AVYAFE               +KFG+V+  SM F
Sbjct: 205 IKITVVQRPQVVAFGGMSVFFYGMGVAVYAFEGVGMVLPLESETKDKDKFGKVLALSMLF 264

[Close]

BLAST of IVF0017601 vs. ExPASy Swiss-Prot
Match: Q9SVG0 (Amino acid transporter AVT3C OS=Arabidopsis thaliana OX=3702 GN=AVT3C PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 48/155 (30.97%), Postives = 70/155 (45.16%), Query Frame = 0


Query: 13  LNPKILRLTFKVAYVWGCFPFQLA------------------------------------ 72
           L  + L ++ K  Y+WGCFPFQL                                     
Sbjct: 163 LGSEFLGVSSKSLYIWGCFPFQLGLNSIKTLTHLAPLSIFADIVDLGAMAVVIVEDSMII 222

Query: 73  ---EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGRVMGFSMDFITVL 114
               P    F  + +F YG  +AVY+FE               +KFG+V+   M FI+++
Sbjct: 223 LKQRPDVVAFGGMSLFLYGMGVAVYSFEGVGMVLPLESEMKDKDKFGKVLALGMGFISLI 282

[Close]

BLAST of IVF0017601 vs. ExPASy TrEMBL
Match: A0A5A7U0U9 (Amino acid transporter ANTL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00940 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.4e-31
Identity = 86/167 (51.50%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP VMDLNPKIL L  KVAYVWGCFPFQL                         
Sbjct: 142 MADVFNSPTVMDLNPKILGLAPKVAYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 114
                           P  E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFEQSPSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. ExPASy TrEMBL
Match: A0A0A0KFY3 (Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118340 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.5e-30
Identity = 84/167 (50.30%), Postives = 90/167 (53.89%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP VMDLNPKIL L  KV YVWGCFPFQL                         
Sbjct: 142 MADVFNSPTVMDLNPKILGLVPKVVYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 114
                           P  E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFKQSPSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. ExPASy TrEMBL
Match: A0A5D3CW42 (Amino acid transporter ANTL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1275G00330 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.1e-30
Identity = 85/167 (50.90%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP VMDLNPKIL L  KVAYVWGCFPFQL                         
Sbjct: 142 MADVFNSPTVMDLNPKILGLAPKVAYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 114
                              E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFEQSQSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. ExPASy TrEMBL
Match: A0A1S3BJZ8 (amino acid transporter ANTL1-like OS=Cucumis melo OX=3656 GN=LOC103490455 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.1e-30
Identity = 85/167 (50.90%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP VMDLNPKIL L  KVAYVWGCFPFQL                         
Sbjct: 142 MADVFNSPTVMDLNPKILGLAPKVAYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 114
                              E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFEQSQSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. ExPASy TrEMBL
Match: A0A6J1CFT9 (amino acid transporter AVT3B-like OS=Momordica charantia OX=3673 GN=LOC111011292 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 8.2e-26
Identity = 77/167 (46.11%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP   DL+PKIL L  KV YVWGCFPFQL                         
Sbjct: 142 MADVFNSPTFTDLSPKILGLAPKVVYVWGCFPFQLGLNSIQTLTHLAPLSIFADVVDLAS 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 114
                           P  E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MLVVMVKDVGIIFKQSPSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETEDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. NCBI nr
Match: KAA0047837.1 (amino acid transporter ANTL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (367), Expect = 3.66e-39
Identity = 86/167 (51.50%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP VMDLNPKIL L  KVAYVWGCFPFQL                         
Sbjct: 142 MADVFNSPTVMDLNPKILGLAPKVAYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 113
                           P  E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFEQSPSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. NCBI nr
Match: KAE8646825.1 (hypothetical protein Csa_005387 [Cucumis sativus])

HSP 1 Score: 143 bits (360), Expect = 3.10e-38
Identity = 84/167 (50.30%), Postives = 90/167 (53.89%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP VMDLNPKIL L  KV YVWGCFPFQL                         
Sbjct: 142 MADVFNSPTVMDLNPKILGLVPKVVYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 113
                           P  E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFKQSPSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. NCBI nr
Match: XP_004139971.1 (amino acid transporter AVT3B [Cucumis sativus])

HSP 1 Score: 143 bits (360), Expect = 3.89e-38
Identity = 84/167 (50.30%), Postives = 90/167 (53.89%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP VMDLNPKIL L  KV YVWGCFPFQL                         
Sbjct: 142 MADVFNSPTVMDLNPKILGLVPKVVYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 113
                           P  E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFKQSPSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. NCBI nr
Match: XP_008448189.1 (PREDICTED: amino acid transporter ANTL1-like [Cucumis melo] >TYK14636.1 amino acid transporter ANTL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 5.45e-38
Identity = 86/167 (51.50%), Postives = 93/167 (55.69%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA----------EPIC---------- 60
           M DVFNSP VMDLNPKIL L  KVAYVWGCFPFQL            P+           
Sbjct: 142 MADVFNSPTVMDLNPKILGLAPKVAYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  -------------------EGFWVIFVFFYGKSMAVYAFE---------------EKFGR 113
                              E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFEQSQSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. NCBI nr
Match: XP_038876664.1 (amino acid transporter AVT3B-like [Benincasa hispida])

HSP 1 Score: 138 bits (348), Expect = 2.22e-36
Identity = 82/167 (49.10%), Postives = 89/167 (53.29%), Query Frame = 0


Query: 1   MDDVFNSPNVMDLNPKILRLTFKVAYVWGCFPFQLA------------------------ 60
           M DVFNSP  MDL+PKIL L  KVAYVWGCFPFQL                         
Sbjct: 142 MADVFNSPTAMDLSPKILGLAPKVAYVWGCFPFQLGLNSIQTLTHLAPLSIFADIVDLGA 201

Query: 61  ---------------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGR 113
                           P  E F    VFFYG  +AVYAFE               EKFGR
Sbjct: 202 MVVVMVKDVLIIFQQSPSVEAFGGFSVFFYGMGVAVYAFEGIGMVLPLESETKDKEKFGR 261

[Close]

BLAST of IVF0017601 vs. TAIR 10
Match: AT5G65990.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-16
Identity = 52/151 (34.44%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 17  ILRLTFKVAYVWGCFPFQLA---------------------------------------E 76
           IL L     Y+WGCFPFQL                                         
Sbjct: 158 ILGLDAASIYLWGCFPFQLGLNSIPSLTHLAPLSIFADIVDVAATLVVMVQDVFIFLKRR 217

Query: 77  PICEGFWVIFVFFYGKSMAVYAFE---------------EKFGRVMGFSMDFITVLYGAF 114
           P    F  + VFFYG  +AVYAFE               +KFGR +G +M  I+++YGAF
Sbjct: 218 PPLRVFGGVSVFFYGLGVAVYAFEGIGMVLPLELEAKYKDKFGRALGLAMGLISIMYGAF 277

[Close]

BLAST of IVF0017601 vs. TAIR 10
Match: AT2G42005.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 53/159 (33.33%), Postives = 73/159 (45.91%), Query Frame = 0


Query: 9   NVMDLNPKILRLTFKVAYVWGCFPFQLA-------------------------------- 68
           ++M ++PK L       Y+WGCFPFQL                                 
Sbjct: 145 HLMGVSPKSL-------YIWGCFPFQLGLNSIKTLTHLAPLSIFADVVDLGAMAVVIVED 204

Query: 69  -------EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGRVMGFSMDF 114
                   P    F  + VFFYG  +AVYAFE               +KFG+V+  SM F
Sbjct: 205 IKITVVQRPQVVAFGGMSVFFYGMGVAVYAFEGVGMVLPLESETKDKDKFGKVLALSMLF 264

[Close]

BLAST of IVF0017601 vs. TAIR 10
Match: AT4G38250.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 48/155 (30.97%), Postives = 70/155 (45.16%), Query Frame = 0


Query: 13  LNPKILRLTFKVAYVWGCFPFQLA------------------------------------ 72
           L  + L ++ K  Y+WGCFPFQL                                     
Sbjct: 163 LGSEFLGVSSKSLYIWGCFPFQLGLNSIKTLTHLAPLSIFADIVDLGAMAVVIVEDSMII 222

Query: 73  ---EPICEGFWVIFVFFYGKSMAVYAFE---------------EKFGRVMGFSMDFITVL 114
               P    F  + +F YG  +AVY+FE               +KFG+V+   M FI+++
Sbjct: 223 LKQRPDVVAFGGMSLFLYGMGVAVYSFEGVGMVLPLESEMKDKDKFGKVLALGMGFISLI 282

The following BLAST results are available for this feature:

BLAST of IVF0017601 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKY3	3.7e-15	34.44	Amino acid transporter AVT3A OS=Arabidopsis thaliana OX=3702 GN=AVT3A PE=1 SV=1	[more]
F4ILY9	2.4e-14	33.33	Amino acid transporter AVT3B OS=Arabidopsis thaliana OX=3702 GN=AVT3B PE=2 SV=1	[more]
Q9SVG0	2.6e-13	30.97	Amino acid transporter AVT3C OS=Arabidopsis thaliana OX=3702 GN=AVT3C PE=1 SV=1	[more]

BLAST of IVF0017601 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0U9	8.4e-31	51.50	Amino acid transporter ANTL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0KFY3	5.5e-30	50.30	Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118340 PE...	[more]
A0A5D3CW42	7.1e-30	50.90	Amino acid transporter ANTL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BJZ8	7.1e-30	50.90	amino acid transporter ANTL1-like OS=Cucumis melo OX=3656 GN=LOC103490455 PE=3 S...	[more]
A0A6J1CFT9	8.2e-26	46.11	amino acid transporter AVT3B-like OS=Momordica charantia OX=3673 GN=LOC111011292...	[more]

BLAST of IVF0017601 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047837.1	3.66e-39	51.50	amino acid transporter ANTL1-like [Cucumis melo var. makuwa]	[more]
KAE8646825.1	3.10e-38	50.30	hypothetical protein Csa_005387 [Cucumis sativus]	[more]
XP_004139971.1	3.89e-38	50.30	amino acid transporter AVT3B [Cucumis sativus]	[more]
XP_008448189.1	5.45e-38	51.50	PREDICTED: amino acid transporter ANTL1-like [Cucumis melo] >TYK14636.1 amino ac...	[more]
XP_038876664.1	2.22e-36	49.10	amino acid transporter AVT3B-like [Benincasa hispida]	[more]

BLAST of IVF0017601 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65990.1	2.6e-16	34.44	Transmembrane amino acid transporter family protein	[more]
AT2G42005.1	1.7e-15	33.33	Transmembrane amino acid transporter family protein	[more]
AT4G38250.1	1.9e-14	30.97	Transmembrane amino acid transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22950	AMINO ACID TRANSPORTER	coord: 42..113
None	No IPR available	PANTHER	PTHR22950:SF529	AMINO ACID TRANSPORTER AVT3B	coord: 42..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017601.2	IVF0017601.2	mRNA