IVF0017584 (gene) Melon (IVF77) v1

Overview
NameIVF0017584
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 18720125 .. 18720298 (-)
RNA-Seq ExpressionIVF0017584
SyntenyIVF0017584
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCGCGCTCCACATCGCCGTGTTCTTCTACCAAATCCCAATTCCTAATCCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAAGATATCATTGAAGCCATCAAATTTCGAGAAGAATTTGATGCTGCCGGTGTCGGATCCTCCTCGCAACATTGATCAGAGGCGATGA

mRNA sequence

ATGATTTTCGCGCTCCACATCGCCGTGTTCTTCTACCAAATCCCAATTCCTAATCCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAAGATATCATTGAAGCCATCAAATTTCGAGAAGAATTTGATGCTGCCGGTGTCGGATCCTCCTCGCAACATTGATCAGAGGCGATGA

Coding sequence (CDS)

ATGATTTTCGCGCTCCACATCGCCGTGTTCTTCTACCAAATCCCAATTCCTAATCCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAAGATATCATTGAAGCCATCAAATTTCGAGAAGAATTTGATGCTGCCGGTGTCGGATCCTCCTCGCAACATTGATCAGAGGCGATGA

Protein sequence

MIFALHIAVFFYQIPIPNPFLLFTAKASSKISLKPSNFEKNLMLPVSDPPRNIDQRR
Homology
[Close]
BLAST of IVF0017584 vs. ExPASy TrEMBL
Match: A0A5A7T635 (Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001410 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 5  LHIAVFFYQIPIPNPFLLFTAKASSKISLKPSNFEKNLMLPVSDPPRNIDQR 57
          LHI VFF QIPIPNPFLLFTAKASSKISLKP N EKNLML +SDPPR+  ++
Sbjct: 2  LHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEK 53

[Close]
BLAST of IVF0017584 vs. ExPASy TrEMBL
Match: A0A5D3BAI3 (Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002090 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 5  LHIAVFFYQIPIPNPFLLFTAKASSKISLKPSNFEKNLMLPVSDPPRNIDQR 57
          LHI VFF QIPIPNPFLLFTAKASSKISLKP N EKNLML +SDPPR+  ++
Sbjct: 2  LHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEK 53

[Close]
BLAST of IVF0017584 vs. NCBI nr
Match: TYJ95906.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 4.58e-16
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 5  LHIAVFFYQIPIPNPFLLFTAKASSKISLKPSNFEKNLMLPVSDPPRNIDQR 56
          LHI VFF QIPIPNPFLLFTAKASSKISLKP N EKNLML +SDPPR+  ++
Sbjct: 2  LHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEK 53

[Close]
BLAST of IVF0017584 vs. NCBI nr
Match: KAA0036839.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 5.54e-16
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 5  LHIAVFFYQIPIPNPFLLFTAKASSKISLKPSNFEKNLMLPVSDPPRNIDQR 56
          LHI VFF QIPIPNPFLLFTAKASSKISLKP N EKNLML +SDPPR+  ++
Sbjct: 2  LHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEK 53

[Close]
BLAST of IVF0017584 vs. NCBI nr
Match: KAA0065956.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa] >TYK30273.1 putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 46.6 bits (109), Expect = 6.88e-05
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 24 TAKASSKISLKPSNFEKNLMLPVSDPPRNIDQR 56
          ++ ASSKISLKP N EKNLMLP+SDPP   +++
Sbjct: 4  SSNASSKISLKPLNHEKNLMLPMSDPPHGSEEK 36

[Close]
BLAST of IVF0017584 vs. NCBI nr
Match: TYK31438.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 1.06e-04
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 25 AKASSKISLKPSNFEKNLMLPVSDPPRNIDQR 56
          AKA SK+SLKPSN EKNLMLPVSDPP   + +
Sbjct: 38 AKARSKMSLKPSNSEKNLMLPVSDPPHGTEDK 69

The following BLAST results are available for this feature:
BLAST of IVF0017584 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017584 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T6352.5e-1278.85Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3BAI32.5e-1278.85Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
BLAST of IVF0017584 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ95906.14.58e-1678.85putative UDP-sugar transporter [Cucumis melo var. makuwa][more]
KAA0036839.15.54e-1678.85putative UDP-sugar transporter [Cucumis melo var. makuwa][more]
KAA0065956.16.88e-0563.64putative UDP-sugar transporter [Cucumis melo var. makuwa] >TYK30273.1 putative U... [more]
TYK31438.11.06e-0471.88putative UDP-sugar transporter [Cucumis melo var. makuwa][more]
BLAST of IVF0017584 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017584.1IVF0017584.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport