IVF0017578 (gene) Melon (IVF77) v1

Overview
NameIVF0017578
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionWRKY domain-containing protein
Locationtig00195367: 107917 .. 108180 (-)
RNA-Seq ExpressionIVF0017578
SyntenyIVF0017578
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGA

mRNA sequence

ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGA

Coding sequence (CDS)

ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGA

Protein sequence

MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICIGEWDFSLDNIDFDQNFPFDSLDFIS
Homology
[Close]
BLAST of IVF0017578 vs. ExPASy TrEMBL
Match: A0A5A7U0S2 (Putative WRKY transcription factor 46 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001210 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
          MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 1  MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60

Query: 61 CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
          CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 61 CIGEWDFSLDNIDFDQNFPFDSLDFIS 87

[Close]
BLAST of IVF0017578 vs. ExPASy TrEMBL
Match: A0A5D3D3H9 (Putative WRKY transcription factor 46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005380 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 254 MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 313

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
           CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 314 CIGEWDFSLDNIDFDQNFPFDSLDFIS 340

[Close]
BLAST of IVF0017578 vs. ExPASy TrEMBL
Match: A0A1S3AVR5 (probable WRKY transcription factor 46 OS=Cucumis melo OX=3656 GN=LOC103483201 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 254 MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 313

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
           CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 314 CIGEWDFSLDNIDFDQNFPFDSLDFIS 340

[Close]
BLAST of IVF0017578 vs. ExPASy TrEMBL
Match: A0A0A0L772 (WRKY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119700 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           M+PTFIPGE LT AAVSSPA+DTAWDWSGYDGG+QRVQSSEQSAVTEI+SATTSVTNSPI
Sbjct: 252 MNPTFIPGEDLT-AAVSSPATDTAWDWSGYDGGVQRVQSSEQSAVTEIVSATTSVTNSPI 311

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
             G+WDFSLDNIDFD NFPFDSLDFIS
Sbjct: 312 YNGDWDFSLDNIDFDHNFPFDSLDFIS 337

[Close]
BLAST of IVF0017578 vs. ExPASy TrEMBL
Match: A0A6J1II79 (probable WRKY transcription factor 46 OS=Cucurbita maxima OX=3661 GN=LOC111473324 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.5e-21
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           M+P F+     +AAAVSS  S+TAWD SGY G +Q VQSSEQS +TE++SATTSVTNSPI
Sbjct: 260 MEPGFVADGNWSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSPI 319

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
             G+WD SLD IDFDQ F FD LDFIS
Sbjct: 320 GNGDWDLSLDKIDFDQFFHFDRLDFIS 346

[Close]
BLAST of IVF0017578 vs. NCBI nr
Match: KAA0048904.1 (putative WRKY transcription factor 46 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 2.79e-56
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
          MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 1  MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60

Query: 61 CIGEWDFSLDNIDFDQNFPFDSLDFIS 87
          CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 61 CIGEWDFSLDNIDFDQNFPFDSLDFIS 87

[Close]
BLAST of IVF0017578 vs. NCBI nr
Match: TYK17666.1 (putative WRKY transcription factor 46 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 5.31e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 254 MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 313

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 87
           CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 314 CIGEWDFSLDNIDFDQNFPFDSLDFIS 340

[Close]
BLAST of IVF0017578 vs. NCBI nr
Match: XP_008437915.1 (PREDICTED: probable WRKY transcription factor 46 [Cucumis melo])

HSP 1 Score: 178 bits (451), Expect = 5.31e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 254 MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 313

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 87
           CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 314 CIGEWDFSLDNIDFDQNFPFDSLDFIS 340

[Close]
BLAST of IVF0017578 vs. NCBI nr
Match: XP_011650695.1 (probable WRKY transcription factor 46 [Cucumis sativus] >KGN56437.1 hypothetical protein Csa_011714 [Cucumis sativus])

HSP 1 Score: 154 bits (390), Expect = 6.95e-44
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           M+PTFIPGE LTAA VSSPA+DTAWDWSGYDGG+QRVQSSEQSAVTEI+SATTSVTNSPI
Sbjct: 252 MNPTFIPGEDLTAA-VSSPATDTAWDWSGYDGGVQRVQSSEQSAVTEIVSATTSVTNSPI 311

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 87
             G+WDFSLDNIDFD NFPFDSLDFIS
Sbjct: 312 YNGDWDFSLDNIDFDHNFPFDSLDFIS 337

[Close]
BLAST of IVF0017578 vs. NCBI nr
Match: XP_038901015.1 (probable WRKY transcription factor 46 [Benincasa hispida])

HSP 1 Score: 141 bits (356), Expect = 7.76e-39
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGY----DGGLQRVQSSEQSAVTEIISATTSVT 60
           +DPTFI G GL+A AVS  AS+TAWDW+ Y    DGGLQRVQSSEQS VTEIISATTSVT
Sbjct: 244 VDPTFIAGGGLSAVAVSPAASNTAWDWNAYGGEDDGGLQRVQSSEQSDVTEIISATTSVT 303

Query: 61  NSPICIGEWDFSLDNIDFDQNFPFDSLDFIS 87
           NSPIC G+WDFSLDNIDFDQNFPFD LDF S
Sbjct: 304 NSPICNGDWDFSLDNIDFDQNFPFDCLDFTS 334

The following BLAST results are available for this feature:
BLAST of IVF0017578 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017578 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0S23.0e-41100.00Putative WRKY transcription factor 46 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3D3H93.0e-41100.00Putative WRKY transcription factor 46 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3AVR53.0e-41100.00probable WRKY transcription factor 46 OS=Cucumis melo OX=3656 GN=LOC103483201 PE... [more]
A0A0A0L7722.7e-3488.51WRKY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119700 PE=4 S... [more]
A0A6J1II793.5e-2166.67probable WRKY transcription factor 46 OS=Cucurbita maxima OX=3661 GN=LOC11147332... [more]
BLAST of IVF0017578 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048904.12.79e-56100.00putative WRKY transcription factor 46 [Cucumis melo var. makuwa][more]
TYK17666.15.31e-53100.00putative WRKY transcription factor 46 [Cucumis melo var. makuwa][more]
XP_008437915.15.31e-53100.00PREDICTED: probable WRKY transcription factor 46 [Cucumis melo][more]
XP_011650695.16.95e-4488.51probable WRKY transcription factor 46 [Cucumis sativus] >KGN56437.1 hypothetical... [more]
XP_038901015.17.76e-3979.12probable WRKY transcription factor 46 [Benincasa hispida][more]
BLAST of IVF0017578 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017578.1IVF0017578.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0000976 transcription cis-regulatory region binding