IVF0017508 (gene) Melon (IVF77) v1

Overview
NameIVF0017508
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-dependent RNA polymerase, mitoviral
Locationchr12: 12922667 .. 12922978 (-)
RNA-Seq ExpressionIVF0017508
SyntenyIVF0017508
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCTATTATCCTCTCACAACTTTCCAAATCGTCCATCATCACACCAACTTCCTCCAACTCGCGACCTGACTTTAACAAGCCTTTATATAATCAAAAAGGTGTTATTAGCAAAGAAGAATTCCTCAACCCTCACGAAGACTTGCAATGCGTTCCTTCACCCCCCCCCCCACACACACACATTGTTATACATATTTTCAAGGAGAAAGACGTGCATCTTTTGTGTAAATTCCGAAACCTAAGAATCCCTAGGTCATATAAGGAACTTAAGAGGAGATTAGGGGTTGAGGTTAGTAGAAAGATGGTTTAA

mRNA sequence

ATGCCACCTATTATCCTCTCACAACTTTCCAAATCGTCCATCATCACACCAACTTCCTCCAACTCGCGACCTGACTTTAACAAGCCTTTATATAATCAAAAAGGTGTTATTAGCAAAGAAGAATTCCTCAACCCTCACGAAGACTTGCAATGCGTTCCTTCACCCCCCCCCCCACACACACACATTGTTATACATATTTTCAAGGAGAAAGACGTGCATCTTTTGTGTAAATTCCGAAACCTAAGAATCCCTAGGTCATATAAGGAACTTAAGAGGAGATTAGGGGTTGAGGTTAGTAGAAAGATGGTTTAA

Coding sequence (CDS)

ATGCCACCTATTATCCTCTCACAACTTTCCAAATCGTCCATCATCACACCAACTTCCTCCAACTCGCGACCTGACTTTAACAAGCCTTTATATAATCAAAAAGGTGTTATTAGCAAAGAAGAATTCCTCAACCCTCACGAAGACTTGCAATGCGTTCCTTCACCCCCCCCCCCACACACACACATTGTTATACATATTTTCAAGGAGAAAGACGTGCATCTTTTGTGTAAATTCCGAAACCTAAGAATCCCTAGGTCATATAAGGAACTTAAGAGGAGATTAGGGGTTGAGGTTAGTAGAAAGATGGTTTAA

Protein sequence

MPPIILSQLSKSSIITPTSSNSRPDFNKPLYNQKGVISKEEFLNPHEDLQCVPSPPPPHTHIVIHIFKEKDVHLLCKFRNLRIPRSYKELKRRLGVEVSRKMV
Homology
[Close]
BLAST of IVF0017508 vs. ExPASy TrEMBL
Match: A0A5D3CHB7 (RNA-dependent RNA polymerase, mitoviral OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001420 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.8e-12
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 34  KGVISKEEFLNPHEDLQCVPSPPPPHTHIVIHIFKEKDVHLLCKFRNLRIPRSYKELKRR 93
           K ++ +EEFLN  EDLQCV    PPH++  IHIFKE+DVHL CK RN RI +  KELKRR
Sbjct: 270 KCIVGQEEFLNSKEDLQCV----PPHSYTAIHIFKEEDVHLACKPRNSRIHKLSKELKRR 329

Query: 94  LGVEVSRKM 103
           L VE ++ +
Sbjct: 330 LEVEAAKSV 334

[Close]
BLAST of IVF0017508 vs. NCBI nr
Match: TYK11283.1 (RNA-dependent RNA polymerase, mitoviral [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 4.00e-15
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 34  KGVISKEEFLNPHEDLQCVPSPPPPHTHIVIHIFKEKDVHLLCKFRNLRIPRSYKELKRR 93
           K ++ +EEFLN  EDLQCVP    PH++  IHIFKE+DVHL CK RN RI +  KELKRR
Sbjct: 270 KCIVGQEEFLNSKEDLQCVP----PHSYTAIHIFKEEDVHLACKPRNSRIHKLSKELKRR 329

Query: 94  LGVEVSR 100
           L VE ++
Sbjct: 330 LEVEAAK 332

The following BLAST results are available for this feature:
BLAST of IVF0017508 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017508 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CHB77.8e-1257.97RNA-dependent RNA polymerase, mitoviral OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of IVF0017508 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11283.14.00e-1559.70RNA-dependent RNA polymerase, mitoviral [Cucumis melo var. makuwa][more]
BLAST of IVF0017508 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017508.1IVF0017508.1mRNA