IVF0017462 (gene) Melon (IVF77) v1

Overview
NameIVF0017462
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Locationchr04: 17294320 .. 17294529 (+)
RNA-Seq ExpressionIVF0017462
SyntenyIVF0017462
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTCATTAAAGATTATGACTGCACTATCACATACCACCTTGGGAAAGCCAATATCATAGCTGACGCGTTAAGCATAAAGATCCCCAGCCCAAGGAACAGAGGGAGAATGGCTCTATTAAGAGAACTAAAGGGCTTCAAAACAATACTAAAGGCAAGGACATCTGGAAACCTGATGGCGCGTTTTCAGGTGAAGCCTACGCTTTAG

mRNA sequence

ATGAAGCTCATTAAAGATTATGACTGCACTATCACATACCACCTTGGGAAAGCCAATATCATAGCTGACGCGTTAAGCATAAAGATCCCCAGCCCAAGGAACAGAGGGAGAATGGCTCTATTAAGAGAACTAAAGGGCTTCAAAACAATACTAAAGGCAAGGACATCTGGAAACCTGATGGCGCGTTTTCAGGTGAAGCCTACGCTTTAG

Coding sequence (CDS)

ATGAAGCTCATTAAAGATTATGACTGCACTATCACATACCACCTTGGGAAAGCCAATATCATAGCTGACGCGTTAAGCATAAAGATCCCCAGCCCAAGGAACAGAGGGAGAATGGCTCTATTAAGAGAACTAAAGGGCTTCAAAACAATACTAAAGGCAAGGACATCTGGAAACCTGATGGCGCGTTTTCAGGTGAAGCCTACGCTTTAG

Protein sequence

MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLMARFQVKPTL
Homology
BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7UWA6 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001920 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.2e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
          MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 ARFQVKPTL 70
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7VIK8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-18
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
          MKLIKDYDCTI Y+  K N+IADALS K  SPRN+GRMALL++L+GFK +L A T GN M
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 ARFQVKPTL 70
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5D3DMM3 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.8e-16
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 1   MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
           M+LIKDYDCTI YHLGKAN+ ADALS K  S  N+G++ALL EL+  KTIL AR  GNL+
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  ARFQVKPTL 70
           ARFQ K TL
Sbjct: 100 ARFQDKTTL 108

BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7UMR3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00250 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.0e-13
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
          M+LIKDY+ TI YH GKAN++A+ALS K PS   +GR+A ++EL+  K IL    +GNL+
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAGNLI 60

Query: 61 ARFQVKPTL 70
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7UKK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00030 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1    MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRG---RMALLRELKGFKTILKARTSG 60
            ++LIKDYDCTI YH GKAN++ADALS K   P++     R+ALL EL+GFK ++    SG
Sbjct: 1041 LELIKDYDCTIEYHPGKANVVADALSRKSRLPKSASCGIRVALLNELRGFKAVVSTEDSG 1100

Query: 61   NLMARFQVKPTL 70
            +L+A+FQV+ +L
Sbjct: 1101 SLLAQFQVRSSL 1112

BLAST of IVF0017462 vs. NCBI nr
Match: KAA0058456.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 1.66e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
          MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 ARFQVKPTL 69
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

BLAST of IVF0017462 vs. NCBI nr
Match: KAA0067194.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.84e-25
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
          MKLIKDYDCTI Y+  K N+IADALS K  SPRN+GRMALL++L+GFK +L A T GN M
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 ARFQVKPTL 69
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

BLAST of IVF0017462 vs. NCBI nr
Match: KAA0059914.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.64e-21
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 1   MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
           M+LIKDYDCTI YHLGKAN+ ADALS K  S  N+G++ALL EL+  KTIL AR  GNL+
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  ARFQVKPTL 69
           ARFQ K TL
Sbjct: 100 ARFQDKTTL 108

BLAST of IVF0017462 vs. NCBI nr
Match: KAA0054749.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 8.03e-17
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
          M+LIKDY+ TI YH GKAN++A+ALS K PS   +GR+A ++EL+  K IL    +GNL+
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAGNLI 60

Query: 61 ARFQVKPTL 69
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

BLAST of IVF0017462 vs. NCBI nr
Match: KAA0036590.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.63e-16
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
          MKLIKDY  TI YH  KAN++AD  S K  +  NRG +ALLREL+GFK IL A  S NLM
Sbjct: 1  MKLIKDYGYTIAYHSKKANVVADTSSRKSLNTTNRGSLALLRELRGFKGILNAGKSKNLM 60

Query: 61 ARFQVKPT 68
          AR QVK T
Sbjct: 61 ARSQVKLT 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UWA67.2e-30100.00CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G... [more]
A0A5A7VIK81.7e-1872.46Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE... [more]
A0A5D3DMM37.8e-1668.12CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G... [more]
A0A5A7UMR38.0e-1359.42DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UKK43.1e-1254.17Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... [more]
Match NameE-valueIdentityDescription
KAA0058456.11.66e-40100.00CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [... [more]
KAA0067194.12.84e-2572.46polyprotein [Cucumis melo var. makuwa][more]
KAA0059914.17.64e-2168.12CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [... [more]
KAA0054749.18.03e-1759.42DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0036590.14.63e-1663.24polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017462.1IVF0017462.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016779 nucleotidyltransferase activity