IVF0017458 (gene) Melon (IVF77) v1

Overview
NameIVF0017458
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr08: 1082399 .. 1082872 (-)
RNA-Seq ExpressionIVF0017458
SyntenyIVF0017458
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCCAACCTCCCACTTCCTCCTCTGTATAAATAAACAACCGTATTCAAACCGAGTCGATACCGAGTTGAAGAGAGAGAGAAAAACAGAAAGAGAAAAGATTTTAGAGAGAGAACGGATGGATGATGCAATTGACAGCAAGAAAACGAAGACGAAGAAGAGGAGAGTATTCAGCTTCCAGAGGCTCAGAGATTCGTGGAAGTGGAAATTTCTTAGAGATTTCAAGTGGAAGCGATTGAATCTCCAGATCGGTTTCTTTGACGCTATAATTTTCCGAATCGTTTCTCTGTTTGAAGCCATTGCGTTGGTAGGCATCGCCGGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGATTCCATATTCGCATGTGCTTTTGATATTAACCAACTTCTGTATGTATTTGTTAATTTGTTATAAAAATTTCCTTCCTCTTCAGTATATATATATTTTTTCAAGTCATTATCAATTAA

mRNA sequence

GCCCCAACCTCCCACTTCCTCCTCTGTATAAATAAACAACCGTATTCAAACCGAGTCGATACCGAGTTGAAGAGAGAGAGAAAAACAGAAAGAGAAAAGATTTTAGAGAGAGAACGGATGGATGATGCAATTGACAGCAAGAAAACGAAGACGAAGAAGAGGAGAGTATTCAGCTTCCAGAGGCTCAGAGATTCGTGGAAGTGGAAATTTCTTAGAGATTTCAAGTGGAAGCGATTGAATCTCCAGATCGGTTTCTTTGACGCTATAATTTTCCGAATCGTTTCTCTGTTTGAAGCCATTGCGTTGGTAGGCATCGCCGGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGATTCCATATTCGCATGTGCTTTTGATATTAACCAACTTCTGTATGTATTTGTTAATTTGTTATAAAAATTTCCTTCCTCTTCAGTATATATATATTTTTTCAAGTCATTATCAATTAA

Coding sequence (CDS)

ATGGATGATGCAATTGACAGCAAGAAAACGAAGACGAAGAAGAGGAGAGTATTCAGCTTCCAGAGGCTCAGAGATTCGTGGAAGTGGAAATTTCTTAGAGATTTCAAGTGGAAGCGATTGAATCTCCAGATCGGTTTCTTTGACGCTATAATTTTCCGAATCGTTTCTCTGTTTGAAGCCATTGCGTTGGTAGGCATCGCCGGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA

Protein sequence

MDDAIDSKKTKTKKRRVFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGFFFLCCGGCRF
Homology
BLAST of IVF0017458 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 1  MDDAIDSKKTKTKKRRVFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDAID KKTKT K+RVFSFQRLRDSWKWKFL++FKWKRLNLQ+GFFDAIIFRIVSLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 IALVGIAGFFFLCCGGCRF 80
          +ALVGIA FFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

BLAST of IVF0017458 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-10
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 13 KKRRVFSFQRLR--DSWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGF 72
          KK R   F+RLR   +W+WKFL   FKWKRLNLQ+ F D ++FRI+S+FEAI LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 73 FFLCCGGCRF 80
          F+LCC GC F
Sbjct: 64 FYLCC-GCHF 72

BLAST of IVF0017458 vs. ExPASy TrEMBL
Match: A0A067GHI9 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-10
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 11 KTKKRRVFSFQRL--RDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAG 70
          K   RR   F+RL  R+S +WKFL   KWKRLNLQI FFD ++F+IVS+FEA+ LV  A 
Sbjct: 17 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 76

Query: 71 FFFLCCGGCRF 80
          FFFLCC GC F
Sbjct: 77 FFFLCC-GCHF 84

BLAST of IVF0017458 vs. ExPASy TrEMBL
Match: V4UFE9 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-10
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 11 KTKKRRVFSFQRL--RDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAG 70
          K   RR   F+RL  R+S +WKFL   KWKRLNLQI FFD ++F+IVS+FEA+ LV  A 
Sbjct: 15 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 74

Query: 71 FFFLCCGGCRF 80
          FFFLCC GC F
Sbjct: 75 FFFLCC-GCHF 82

BLAST of IVF0017458 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 7  SKKTKTKKRRVFSFQRLRDSWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSLFEAIALVG 66
          S  + + KR V   + +++SW+WKFL   FKWKRLN+Q+ FFD ++FRI S+ EAI LV 
Sbjct: 5  SSSSSSSKRWVLFKRLIKESWRWKFLGSAFKWKRLNIQLSFFDDVLFRIASVLEAIYLVA 64

Query: 67 IAGFFFLCCGGCRF 80
             FF+LCC GC F
Sbjct: 65 TLCFFYLCC-GCHF 77

BLAST of IVF0017458 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 144 bits (362), Expect = 6.01e-43
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 1  MDDAIDSKKTKTKKRRVFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDAID KKTKT K+RVFSFQRLRDSWKWKFL++FKWKRLNLQ+GFFDAIIFRIVSLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 IALVGIAGFFFLCCGGCRF 79
          +ALVGIA FFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

BLAST of IVF0017458 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136 bits (342), Expect = 6.39e-40
Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 1  MDDAIDSKKTKTKKRRVFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDAID KKTK  KRR FS QRLRDSWKWKFL+DFKWKRLNL IGF DAIIFRI SLFEA
Sbjct: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 IALVGIAGFFFLCCGGCRF 79
          IAL+GIAGFFFLCCGGCRF
Sbjct: 61 IALIGIAGFFFLCCGGCRF 77

BLAST of IVF0017458 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (287), Expect = 2.71e-31
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MDDAIDSKKTKTKKRRVFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDAID KKTK  KRR FS QRLRDSWKWKFL+DFKWKRLNL IGF DAIIFRI SLFEA
Sbjct: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 IALVGIAGFF 70
          IAL+GIAGFF
Sbjct: 61 IALIGIAGFF 68

BLAST of IVF0017458 vs. NCBI nr
Match: XP_030972441.1 (uncharacterized protein LOC115992393 [Quercus lobata])

HSP 1 Score: 72.4 bits (176), Expect = 1.13e-14
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 13 KKRRVFSFQRLR--DSWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGF 72
          KK R   F+RLR   +W+WKFL   FKWKRLNLQ+ F D ++FRI+S+FEAI LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 73 FFLCCGGCRF 79
          F+LCCG C F
Sbjct: 64 FYLCCG-CHF 72

BLAST of IVF0017458 vs. NCBI nr
Match: ESR62900.1 (hypothetical protein CICLE_v10017350mg [Citrus clementina])

HSP 1 Score: 71.6 bits (174), Expect = 2.95e-14
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 15 RRVFSFQRL--RDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGFFFL 74
          RR   F+RL  R+S +WKFL   KWKRLNLQI FFD ++F+IVS+FEA+ LV  A FFFL
Sbjct: 19 RRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATACFFFL 78

Query: 75 CCGGCRF 79
          CCG C F
Sbjct: 79 CCG-CHF 82

BLAST of IVF0017458 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 13 KKRRVFSFQRLRDSWKWKFL---RDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGF 72
          +K ++  ++  ++  + KFL      KWKRLNL++ F + + +RI+S+ EA+ LV    F
Sbjct: 3  RKGKLSIWKTTKERTRLKFLGLGGGLKWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAF 62

Query: 73 FFLCCGGCRF 80
          FFLCC GC+F
Sbjct: 63 FFLCC-GCKF 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLX91.2e-3188.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1[more]
A0A7N2LSF84.3e-1058.57Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A067GHI97.3e-1060.56Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1[more]
V4UFE97.3e-1060.56Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 ... [more]
A0A1R3FVP99.5e-1051.35Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN49382.16.01e-4388.61hypothetical protein Csa_004198 [Cucumis sativus][more]
KAG7034699.16.39e-4087.34hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581417.12.71e-3185.71hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_030972441.11.13e-1458.57uncharacterized protein LOC115992393 [Quercus lobata][more]
ESR62900.12.95e-1462.69hypothetical protein CICLE_v10017350mg [Citrus clementina][more]
Match NameE-valueIdentityDescription
AT5G46295.12.8e-0640.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33726TRANSMEMBRANE PROTEINcoord: 13..79
NoneNo IPR availablePANTHERPTHR33726:SF3TRANSMEMBRANE PROTEINcoord: 13..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017458.1IVF0017458.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane