IVF0017451 (gene) Melon (IVF77) v1

Overview
NameIVF0017451
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr12: 12404528 .. 12404695 (-)
RNA-Seq ExpressionIVF0017451
SyntenyIVF0017451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACAACGTTGACGATGTGGACGAGAGGGACTCCACGTACGCGACGACCACTGCTTCAGAAGACATTGACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCATGACGAACTAGCTAAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACAACGTTGACGATGTGGACGAGAGGGACTCCACGTACGCGACGACCACTGCTTCAGAAGACATTGACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCATGACGAACTAGCTAAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACAACGTTGACGATGTGGACGAGAGGGACTCCACGTACGCGACGACCACTGCTTCAGAAGACATTGACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCATGACGAACTAGCTAAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA
Homology
BLAST of IVF0017451 vs. ExPASy TrEMBL
Match: A0A5D3E5R9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002260 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 56
           MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA
Sbjct: 114 MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 168

BLAST of IVF0017451 vs. ExPASy TrEMBL
Match: A0A5A7VDR4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00940 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.2e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 56
           MTYC++V+DVDE DSTYATTTASEDI YIETTNEWSQWHDEL KSMFTDWQLRNA
Sbjct: 311 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 365

BLAST of IVF0017451 vs. ExPASy TrEMBL
Match: A0A5D3BAK8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19391G00020 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.2e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 56
           MTYC++V+DVDE DSTYATTTASEDI YIETTNEWSQWHDEL KSMFTDWQLRNA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

BLAST of IVF0017451 vs. ExPASy TrEMBL
Match: A0A5A7SMB5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001310 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 56
           MTYCD+VDD DE DSTYATTTASEDI YIETTNEWSQWHD+LA+SMFT+WQLRNA
Sbjct: 300 MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRNA 354

BLAST of IVF0017451 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 56
          MTYCD++DDVDE DS YATTTASEDI YIETTNEWSQW DELA+SMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0017451 vs. NCBI nr
Match: TYK30996.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.37e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 55
           MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA
Sbjct: 114 MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 168

BLAST of IVF0017451 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 2.45e-27
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 55
          MTYCD++DDVDE DS YATTTASEDI YIETTNEWSQW DELA+SMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0017451 vs. NCBI nr
Match: TYK22655.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 4.08e-26
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1  MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 55
          MTYCD+VDD DE DS YATTTASEDI YIETTNEWSQW DEL +SMFTDWQLRNA
Sbjct: 1  MTYCDDVDDGDEEDSMYATTTASEDIQYIETTNEWSQWRDELVESMFTDWQLRNA 55

BLAST of IVF0017451 vs. NCBI nr
Match: KAA0066980.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96789.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (251), Expect = 9.68e-26
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1   MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 55
           MTYC+NVDDVDE DS Y TTTA+EDI YIETTNEWSQWHDELA+S+FTDWQLRNA
Sbjct: 83  MTYCNNVDDVDEGDSAYTTTTATEDIYYIETTNEWSQWHDELAESIFTDWQLRNA 137

BLAST of IVF0017451 vs. NCBI nr
Match: TYJ95515.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 1.09e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCDNVDDVDERDSTYATTTASEDIDYIETTNEWSQWHDELAKSMFTDWQLRNA 55
           MTYC++V+DVDE DSTYATTTASEDI YIETTNEWSQWHDEL KSMFTDWQLRNA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E5R91.8e-23100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VDR49.2e-2089.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BAK89.2e-2089.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SMB52.1e-1987.27Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BDZ03.5e-1987.27Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK30996.11.37e-31100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054051.12.45e-2787.27retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
TYK22655.14.08e-2685.45retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066980.19.68e-2685.45retrotransposon protein [Cucumis melo var. makuwa] >TYJ96789.1 retrotransposon p... [more]
TYJ95515.11.09e-2589.09retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017451.1IVF0017451.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0046872 metal ion binding