IVF0017343 (gene) Melon (IVF77) v1

Overview


Name	IVF0017343
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr01: 7867004 .. 7867186 (-)
RNA-Seq Expression	IVF0017343
Synteny	IVF0017343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGTTGAAGAAGAAAAATGCCGAGACTGAAAGACTTCATAAGATAGAGTATGTAGCAGAAATTCAACCAGATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATGAAGATATTGATGTAGAATCCAACGATGGCTACTGTGAAAGGAATCAGATAGTAAAAGTGGCAAACTACTGA

mRNA sequence

ATGGAGCAGTTGAAGAAGAAAAATGCCGAGACTGAAAGACTTCATAAGATAGAGTATGTAGCAGAAATTCAACCAGATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATGAAGATATTGATGTAGAATCCAACGATGGCTACTGTGAAAGGAATCAGATAGTAAAAGTGGCAAACTACTGA

Coding sequence (CDS)

ATGGAGCAGTTGAAGAAGAAAAATGCCGAGACTGAAAGACTTCATAAGATAGAGTATGTAGCAGAAATTCAACCAGATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATGAAGATATTGATGTAGAATCCAACGATGGCTACTGTGAAAGGAATCAGATAGTAAAAGTGGCAAACTACTGA

Protein sequence

MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDVESNDGYCERNQIVKVANY

Homology

[Close]

BLAST of IVF0017343 vs. ExPASy TrEMBL
Match: A0A5D3CSD6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00020 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 43
          MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV
Sbjct: 31 MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 72

[Close]

BLAST of IVF0017343 vs. ExPASy TrEMBL
Match: A0A5A7UWU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00820 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1   MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 43
           MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV
Sbjct: 185 MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 226

[Close]

BLAST of IVF0017343 vs. ExPASy TrEMBL
Match: A0A0A0K807 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298830 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 22 EIQPDEIEKLKGSEMDEDIDVESNDGYCERNQIV 56
          +IQP EIEKLKGSEMD+DI+VESN GYCERNQ V
Sbjct: 4  KIQPHEIEKLKGSEMDQDINVESNYGYCERNQTV 37

[Close]

BLAST of IVF0017343 vs. NCBI nr
Match: TYK14803.1 (hypothetical protein E5676_scaffold1081G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 4.28e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 42
          MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV
Sbjct: 31 MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 72

[Close]

BLAST of IVF0017343 vs. NCBI nr
Match: KAA0059564.1 (hypothetical protein E6C27_scaffold518G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.83e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1   MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 42
           MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV
Sbjct: 185 MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDV 226

[Close]

BLAST of IVF0017343 vs. NCBI nr
Match: KGN44467.1 (hypothetical protein Csa_015912 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.34e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 23 IQPDEIEKLKGSEMDEDIDVESNDGYCERNQIV 55
          IQP EIEKLKGSEMD+DI+VESN GYCERNQ V
Sbjct: 5  IQPHEIEKLKGSEMDQDINVESNYGYCERNQTV 37

The following BLAST results are available for this feature:

BLAST of IVF0017343 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSD6	2.0e-12	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UWU5	2.0e-12	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0K807	2.4e-05	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298830 PE=4 SV=1	[more]

BLAST of IVF0017343 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14803.1	4.28e-16	100.00	hypothetical protein E5676_scaffold1081G00020 [Cucumis melo var. makuwa]	[more]
KAA0059564.1	1.83e-15	100.00	hypothetical protein E6C27_scaffold518G00820 [Cucumis melo var. makuwa]	[more]
KGN44467.1	1.34e-07	84.85	hypothetical protein Csa_015912 [Cucumis sativus]	[more]

BLAST of IVF0017343 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017343.1	IVF0017343.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane