IVF0017312 (gene) Melon (IVF77) v1

Overview


Name	IVF0017312
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 11258560 .. 11258964 (-)
RNA-Seq Expression	IVF0017312
Synteny	IVF0017312

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCATGTCATCCCTCTTTGTACCGTCCGTCGAAGCCAAGCATCTCCTCTCGTTTCCGTGTGTCATTGTCCTTCGTTCAAGCTCTACCTTCAAATGTCGTGACTCGCACCAATCTGTTTTGTTCCCATCGACGAACATCAGGACAAAGCCAGTTCTTCTCTATTCTTCGAACTTCAGTCGAGCCTTCCTCTACCAATCAACAACCTGAATGCAAGCAAGTCGTTGGTTACGTTCGTAAGCCATCCAAACCGTATGTGAGCTCCCATCTTTCGTCTGAGTCGTGTGCATGTGAGTCGAGTCGTTCCTTGCAAGCCAAGCGACTCAGTTGCCCAATTTATGAGTCGTTCCCTCTTCAGCCGAGCCGCCTAGCCGATCTCCTCTCTAGCCACGCCATTTTTTAG

mRNA sequence

ATGAAACCATGTCATCCCTCTTTGTACCGTCCGTCGAAGCCAAGCATCTCCTCTCGTTTCCGTGTGTCATTGTCCTTCGTTCAAGCTCTACCTTCAAATGTCGTGACTCGCACCAATCTGTTTTGTTCCCATCGACGAACATCAGGACAAAGCCAGTTCTTCTCTATTCTTCGAACTTCAGTCGAGCCTTCCTCTACCAATCAACAACCTGAATGCAAGCAAGTCGTTGGTTACGTTCGTAAGCCATCCAAACCGTATGTGAGCTCCCATCTTTCGTCTGAGTCGTGTGCATGTGAGTCGAGTCGTTCCTTGCAAGCCAAGCGACTCAGTTGCCCAATTTATGAGTCGTTCCCTCTTCAGCCGAGCCGCCTAGCCGATCTCCTCTCTAGCCACGCCATTTTTTAG

Coding sequence (CDS)

ATGAAACCATGTCATCCCTCTTTGTACCGTCCGTCGAAGCCAAGCATCTCCTCTCGTTTCCGTGTGTCATTGTCCTTCGTTCAAGCTCTACCTTCAAATGTCGTGACTCGCACCAATCTGTTTTGTTCCCATCGACGAACATCAGGACAAAGCCAGTTCTTCTCTATTCTTCGAACTTCAGTCGAGCCTTCCTCTACCAATCAACAACCTGAATGCAAGCAAGTCGTTGGTTACGTTCGTAAGCCATCCAAACCGTATGTGAGCTCCCATCTTTCGTCTGAGTCGTGTGCATGTGAGTCGAGTCGTTCCTTGCAAGCCAAGCGACTCAGTTGCCCAATTTATGAGTCGTTCCCTCTTCAGCCGAGCCGCCTAGCCGATCTCCTCTCTAGCCACGCCATTTTTTAG

Protein sequence

MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTSVEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQPSRLADLLSSHAIF

Homology

[Close]

BLAST of IVF0017312 vs. ExPASy TrEMBL
Match: A0A5D3DG78 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00210 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.6e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS 60
           MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS
Sbjct: 1   MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS 60

Query: 61  VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ 120
           VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ
Sbjct: 61  VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ 120

Query: 121 PSRLADLLSSHAIF 135
           PSRLADLLSSHAIF
Sbjct: 121 PSRLADLLSSHAIF 134

[Close]

BLAST of IVF0017312 vs. ExPASy TrEMBL
Match: E5GBN3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.6e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS 60
           MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS
Sbjct: 1   MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS 60

Query: 61  VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ 120
           VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ
Sbjct: 61  VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ 120

Query: 121 PSRLADLLSSHAIF 135
           PSRLADLLSSHAIF
Sbjct: 121 PSRLADLLSSHAIF 134

[Close]

BLAST of IVF0017312 vs. ExPASy TrEMBL
Match: A0A5A7SJC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003250 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 13  KPSISSRFRVSLSFVQALPSNVV-TRTNLFCSHRRTSGQSQFFSILRTSVEPSSTNQQPE 72
           KP +S   R    F +A PS +V +R ++   H+RTS +SQFFS+ RTS + S TNQQPE
Sbjct: 31  KPPVSFICR----FHRASPSIIVLSRVSISNCHQRTSERSQFFSVRRTSAKLSFTNQQPE 90

Query: 73  CKQVVGYVRKPSKPYVSSHLS------SESCACESSRSLQAKRLSCPIYESFPLQPSRLA 132
            KQVV  V KPS+P++S          S    C+   S  A R   P +E FPLQPS L 
Sbjct: 91  RKQVVRRVHKPSEPHMSPIFCLSRVRVSRVVPCKLCDS--AARTDAPSHEPFPLQPSCLL 150

Query: 133 DLLSSHAIF 135
           DLLS   +F
Sbjct: 151 DLLSIQVVF 153

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BLAST of IVF0017312 vs. NCBI nr
Match: ADN33875.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0025863.1 hypothetical protein E6C27_scaffold34G001410 [Cucumis melo var. makuwa] >TYK22602.1 hypothetical protein E5676_scaffold195G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 266 bits (679), Expect = 1.46e-89
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS 60
           MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS
Sbjct: 1   MKPCHPSLYRPSKPSISSRFRVSLSFVQALPSNVVTRTNLFCSHRRTSGQSQFFSILRTS 60

Query: 61  VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ 120
           VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ
Sbjct: 61  VEPSSTNQQPECKQVVGYVRKPSKPYVSSHLSSESCACESSRSLQAKRLSCPIYESFPLQ 120

Query: 121 PSRLADLLSSHAIF 134
           PSRLADLLSSHAIF
Sbjct: 121 PSRLADLLSSHAIF 134

[Close]

BLAST of IVF0017312 vs. NCBI nr
Match: KAA0026310.1 (hypothetical protein E6C27_scaffold19G003250 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.67e-15
Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 26  FVQALPSNVV-TRTNLFCSHRRTSGQSQFFSILRTSVEPSSTNQQPECKQVVGYVRKPSK 85
           F +A PS +V +R ++   H+RTS +SQFFS+ RTS + S TNQQPE KQVV  V KPS+
Sbjct: 40  FHRASPSIIVLSRVSISNCHQRTSERSQFFSVRRTSAKLSFTNQQPERKQVVRRVHKPSE 99

Query: 86  PYVSSHLS------SESCACESSRSLQAKRLSCPIYESFPLQPSRLADLLSSHAIF 134
           P++S          S    C+   S  A R   P +E FPLQPS L DLLS   +F
Sbjct: 100 PHMSPIFCLSRVRVSRVVPCKLCDS--AARTDAPSHEPFPLQPSCLLDLLSIQVVF 153

The following BLAST results are available for this feature:

BLAST of IVF0017312 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017312 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG78	7.6e-68	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBN3	7.6e-68	100.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7SJC9	1.7e-11	44.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0017312 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33875.1	1.46e-89	100.00	hypothetical protein [Cucumis melo subsp. melo] >KAA0025863.1 hypothetical prote...	[more]
KAA0026310.1	1.67e-15	46.55	hypothetical protein E6C27_scaffold19G003250 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0017312 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017312.1	IVF0017312.1	mRNA