IVF0017310 (gene) Melon (IVF77) v1

Overview
NameIVF0017310
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 14619548 .. 14619715 (-)
RNA-Seq ExpressionIVF0017310
SyntenyIVF0017310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGCACGCGTCACTGAAGGAGGTGGCGACTCCGGTCGATGGCTTGCACAACTTGCAAGAAAGGATTGGCTCGTATGCAACTCGACGTGAAGATCGACTGGGACGCAAGAACAATTGTCAACTGAAGGCAGTCGACTCAGTTACTCGCTCAGGTTTACGATAA

mRNA sequence

ATGGTTGGGCACGCGTCACTGAAGGAGGTGGCGACTCCGGTCGATGGCTTGCACAACTTGCAAGAAAGGATTGGCTCGTATGCAACTCGACGTGAAGATCGACTGGGACGCAAGAACAATTGTCAACTGAAGGCAGTCGACTCAGTTACTCGCTCAGGTTTACGATAA

Coding sequence (CDS)

ATGGTTGGGCACGCGTCACTGAAGGAGGTGGCGACTCCGGTCGATGGCTTGCACAACTTGCAAGAAAGGATTGGCTCGTATGCAACTCGACGTGAAGATCGACTGGGACGCAAGAACAATTGTCAACTGAAGGCAGTCGACTCAGTTACTCGCTCAGGTTTACGATAA

Protein sequence

MVGHASLKEVATPVDGLHNLQERIGSYATRREDRLGRKNNCQLKAVDSVTRSGLR
Homology
[Close]
BLAST of IVF0017310 vs. NCBI nr
Match: KAA0062258.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 3.85e-05
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MVGHASLKEVATPVDGLHNLQERIGSYA 28
           MVGHA LKEVA  +DGLHNLQ RIGSYA
Sbjct: 474 MVGHAPLKEVAARIDGLHNLQGRIGSYA 501

[Close]
BLAST of IVF0017310 vs. NCBI nr
Match: TYK30556.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 1.51e-04
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MVGHASLKEVATPVDGLHNLQERIGSYA 28
           MVGHA LKEVA  +DGLH+LQ RIGSYA
Sbjct: 166 MVGHAPLKEVAARIDGLHSLQGRIGSYA 193

The following BLAST results are available for this feature:
BLAST of IVF0017310 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017310 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062258.13.85e-0582.14gag protease polyprotein [Cucumis melo var. makuwa][more]
TYK30556.11.51e-0478.57gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of IVF0017310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017310.1IVF0017310.1mRNA