IVF0017308 (gene) Melon (IVF77) v1

Overview
NameIVF0017308
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptioncytochrome c oxidase subunit 6a, mitochondrial
Locationchr06: 15501588 .. 15506833 (+)
RNA-Seq ExpressionIVF0017308
SyntenyIVF0017308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGGTCATTTCGTGGACTCGGCAATTTGTGAGAGAGAATCAAAGAGAAAATGGCAATGGCGTCGATCCGATCCAATTTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTAAGTCTCTCTCTCTCGCTTAGGTATTTTTTTTTAATTGCGATGGTATATGCACTCCAACTGGTTCACGTCTCTCTCTATTTGCTTGTCTTTATTGACGGATTTTTTCCTTGTTGCTTTCAGCAACTTTGTTTAGTCCATTATATGTTTTGATTTCATTCATTTTCCTGCCCTGTTTTCATCTGACGAAATGGGGGAAAGAAGGAGGATGTTGATTATTCAATCGTGTTCAAATTTTGTTCCAAACTAATTTGATTAGATGCTTTTCGTTCCTTTTAGATTGAAAGTCTTGCCTTGCAGAAGGAGGTGTTTTTGAAATTTGAACTCAGATTTAAATGTTATTCAATAGTTTTTTAAAATAATCGGATGGGATTATATACATTATATTTGACAATTAACTGTGCATGGGGTTTCCAGCCGCTGAGAAGCAGATTTGGTTTAAAGCTTAGGAAAGAAGGCAAAGGGGGAATGATCTATTACTGAGTGGCAACACTATGATTGTTGATTTCTATAATTGAGTAAAAAATCTTGGATTTTGTGGTATATTTAATTTACCTCTGATTTCGAGTGAGTAAGGCATGGTGGAAGGGAAACACAAATGCATCTAATTTATTAGAGGGTTAAGACCTTTAGTCAAGGAACTCTTCTCCAGGTTGAAGGGTGAGTTTTTTCACCTATAATCTGATGCTTTCTTTTTTAATTAATTCTTTTCTGGGATGGAGGTCATGAAAGTTTTTCCACCTCTAATCGTATATCTGTTTCTTCTTTCTCTCACTCCTCTCCACATTTCTCTTTCCTTGGTGGTGGGGGGGGGGGGGGGGATCTTCTTTTTTTGTAGTAGGTAAGTACACTACTGGTGCTAAGCTACTTCAGTATTGTGAATTTATTTTCTAGTAATCCACCATAACATATACTTTTGATGCCTCGTTACATTTGTTGGGTGCATATGTATTGTTAGTTTTAAATACTATTTCATTCTTATATTGTTCAAGCACGTAGGAAGAAAAAATTGAGTGCAAAATTGCTATGTCGCTTGTACTCCTTATGTTTGATCTCTCACCTTCCTTTTTTTTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCTGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATTTATCAAAGGGGCACCCCCACCATGAAGAGCCCCCTGTAATCTATAACTTCAGTCAATTTATACTTTTTCCTCCAGTGCTGAGTTCCTAGTTGCATTGTGGAATTCTGTATTGTACTCTCATGTGTTAACCATTTATTTTTGTTTGGGTTTTCACTGCCTGCAGGCATATCCATATTTGCACATACGCAATAAAGAGTTCCCTTGGGGTAAGTTTCCACTTCATTCAAAGTTATATGACATCTTGTATATCTCTTTGCAATTGCTATTTGGGTTTTATAATATATTTTAAGTCAAAACATATAATTTCCATGAAGTGGTGGTTTTTTATTTTTTATTTTATTTTAATTTGATTTTGGTGCTAGTTGTTTCCTTAAAATGAACTAGTAAAGCATTGCTCTTGTGAATTTAAATTTAGACGTAATGCAGAGTTACCAATAAAACAGTGATTATGCTCCTTTGCAAACTCAGTCATAATTATTGGTGCGTTTTCTTTATTTGGATCGGACATTGTTGATTGTAATCAGAAAGGAAAGTTGATTAGCAGTCCTTATTTTCTCTGTTTACGTTGCTTGATCACAATGTTAGTAAAATAATGTTGGAATCTGGAAGCTGAACCATCCTATTAGTTTGCCAAGTAAATGTACAGCTATTATGTAACCAATAGATTTACTACTAACTCAGCAGCTAGTAACTAATATGCTTGTAACTACCTCGTTCAGCTTGCTAGCAATCTTTAGATCTAGTTCATTACCTTCTCCTTTCATTAATCCAACTCTAACTTAACTTTGAAACTCTTCAACCCCAGATGTTGAATGGGGTAGTTCAACGGCTTCCTCTGTTGGTTGCTTGATCATCTCAGGGTTTTATGGACACTTCCTGGTTTATTATTATTTATTTTATTTTTTAGGACAAGAAACAATTATGTATTACCCATTAACAAAAGAGACAGCCTAAGGGCAAGGAGTTGAGGGCCTACAAAACTAATAAAGAAGAGTCTTCCAATTGTTAAGAATCATAAGAAGGCTATAATTTCCAAAAAAGAAAAAAATGGTGTAATTTATGCACCACCAAGAGTTTGTATGCTGGACAAAGACCAGAAAGAATCAAAAGAAGCAAACTTATCTTCAAACTTCTTGCTCTTTCTTTCTTTCCAAAGACACCCAAGAAGAGCACGAGTATCACATCTTCAATGGATTTTGCCCACCCACAAAATCTACCACCCTCCAACACGTTGATCATCCAATCATCAATCATCTTAGGAAGGCTTCCTACCGACCCAAATATTTAGAAAAATGAAGAACACGCTTTTTAGCAACAAACTCTCAATGTAAAAACTAAAAACAGGTGATACACAATTTACTTCTCTACAAGGCAAGATAGCACATGGAAGGAGAAAGTGACCAACTATAGAACTTCCTTTGGGGCTTCTCAGGGGTATTCAAGCTTCTAAAACCAGTGCCTAGAGGAAGCTTCCATCCCTAGGATCCCTCTCCACTCCCTTAGACACCCTACTGTTTTGCTTACCCCACAAAACTTAAGAGACCGAAACTATCTGGCAATCGAAACAAACCAACCTTTCTTTCCAAATGGCTATCTGTGGAGGAACTCCTTGATCATAGCACTGACATATCTATAACGAACGATCATCATACTAAGGGTGTGGAAAAAGGAACCCTTGACACCACTTACAAAATCACAACATCAAAGAATAGGGTCTAGGTCTTTCTTCACCTTTTGTCAAAGAATACAACAAAAAGGCCCAATAAGCCAAGATATCTTCTTGATTAGCTTGCCCAGCGTGTTAGCACGACTGCAAAGAACCTACCAAGCATAGAGGGCCACCTTTCTAGGGACCTTAATCCTCTAAAAGATCGATTCACCTAAGGGGAAAGGAAGAAAACTTGCATGAGAACTCTTCTGAAGGATTGGGGCTCCAAAATCTGACATCCTTTCTCCCCAATCTATAGGGGTGACTCTTGAGTAAACAAAGAATAGTGGTCACATCTGTTGCTTCCCTATTAGAAAGAGAACAAGTAAAATCCAATTGAAAAGGAACAAAAGCTCTCAGACCACACTAAAAAGGGACAACAAAATGACTTTTGAAAGACGACAATTAATACAATCAAGAAAACATATCCCAATGGGACGTTTGGGGCAATGAGTTGGTTATTATAGTCGTTGGTTATTATAGTCGTAGGTTATTATAGTTTGGTTATAATAGTTTGCGTGCAGGATGTAGATTATTTTAGTTTGGGTGATAATAACATGCATTTGAGTAAACTATCTTAGTTTGAGAAGAAAATAGTAAACACTATAACAAAGAATAAGAAAATGACAAATGTAAAACATAAATCTTGTAGCAGATAATAAAAACTATAGCAAATAGGGGTTTTGGAGTAGTGTTGATTGTAATTAATTGGAGACTACAAGATAGTGTTTACTGTAGCAAGGAGGTGGTTATTATAATCTTAGATAGTTCATCCTCCAAACAACTCCAAAGAGGTTGTCCACTGTTCTAGCTTTCGAATTAAGTTCTAGCCATGAAGTAGTAGTTGATAATAATTGGTAGAACATTCTTTACAATATTTTCATAGAACTCTAAAAAATGATCTCGTAAAGGGGCGTCACCAAACTAATAGGCTGATTCACGAACTCTAGCTATCTTCTTCTTCTTTTGTCTTTTCTTGTACATGTCCTTTTTCTGTTACTTGTTTGACCGGTCTTCCCTAAAGAGTCGGTCTTGCACTTTGGACAATTGATTCTAAAAAAAGTGAAGGTTTTTACTTTGCAAGTTTTACATGGTTGTGCTAACTAACACGATGGATTGGCTTGTGAAGAAGTTTCCCTTGCTTGGCCCCCTTTGCTGTATTCTTCGTTGGAAGATGAAGGAAGACTTGGATCATATTCTCTGTAGTTGTAAGTTATCGAGAGCTATGTGGGGTTACTCTATTAGACAATTGGGTTCTTGCATGCTAGACATAGGGTTACTAATGATATGACTTGGCGAGTTCCTCCTCCATTTTGCTCTTTTGGAAGGAGGAGGTGCTTTTTATGGATGGCCAGGCTTTGGGTTTTGTAGGGGAATAAAATAGCAGGATGTTGAGGGACTATTTTGATGTTTGGTCCTTTGTTTTAGTTACTACATTTTGCTTTGGGTTTCAGCTTCAAAGACCTTTTGTAACTATTCTGTTGATTCTATTTTGCATAGGTGAAGTCTCTTCCTTGAGAGGGATTTGTCTCTCTTGTATGCTTTTAGGTTTTTGAAGTTGTTCTTAAACCCTTTTTGGGGAACTGTTTGCTAACAGTTGCTTTCCTCATTTATGAAAGATGGCTGAATTTGAATGGATGATCTGATATTCATTCTCATCTTTCCTCTATGTTCCTTGCTCAACTGCTTCTTCACCGTTTATTATCCATTGTCAAAGTAATATTGTTTTTACTGATTTAAAAATAATATATATATATATATATATATATATATGTTTCTTGTGCTTTAGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTAAGGATTACTTTTGGGTTCAAAAGCGCATCAGAGTTCTCATTCTGTTCCATATCAGAAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTCTCTGCAAAGGAAAAGCCATGGCATGGCTATTTTGCATTTGTTAAAATGCTATCAGAATATTATGTGAATCATGGTTTGAAGTTCTTTTTTTTGTCACAGCCTTCCTTCCTGATTAATAAGATAAAATTTCTTCCCATTGTGCTAAAAGGTCTGCAGTAAGCTTTGGTTGGGTTGAAAAATGAGCTTCTATAACTTCTGGTACTTGATGGGTAATAATTGTTACTTTGGTGAACTGAAACAATTGCTAGGTGTTATCAACACAGTTGGATCATTCTCATAAGTTTGGTTTGTATTTTTAAAAAAATGG

mRNA sequence

GTTTGGTCATTTCGTGGACTCGGCAATTTGTGAGAGAGAATCAAAGAGAAAATGGCAATGGCGTCGATCCGATCCAATTTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCTGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATTTATCAAAGGGGCACCCCCACCATGAAGAGCCCCCTGCATATCCATATTTGCACATACGCAATAAAGAGTTCCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTAAGGATTACTTTTGGGTTCAAAAGCGCATCAGAGTTCTCATTCTGTTCCATATCAGAAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTCTCTGCAAAGGAAAAGCCATGGCATGGCTATTTTGCATTTGTTAAAATGCTATCAGAATATTATGTGAATCATGGTTTGAAGTTCTTTTTTTTGTCACAGCCTTCCTTCCTGATTAATAAGATAAAATTTCTTCCCATTGTGCTAAAAGGTCTGCAGTAAGCTTTGGTTGGGTTGAAAAATGAGCTTCTATAACTTCTGGTACTTGATGGGTAATAATTGTTACTTTGGTGAACTGAAACAATTGCTAGGTGTTATCAACACAGTTGGATCATTCTCATAAGTTTGGTTTGTATTTTTAAAAAAATGG

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCCAATTTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCTGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATTTATCAAAGGGGCACCCCCACCATGAAGAGCCCCCTGCATATCCATATTTGCACATACGCAATAAAGAGTTCCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTAA

Protein sequence

MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Homology
[Close]
BLAST of IVF0017308 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.6e-33
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS   RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]
BLAST of IVF0017308 vs. ExPASy TrEMBL
Match: A0A1S3BPM0 (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. ExPASy TrEMBL
Match: A0A0A0L3I0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 3  MASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 62
          MASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]
BLAST of IVF0017308 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.2e-47
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSN LRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA IRSN LRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.8e-46
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSN LRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. NCBI nr
Match: XP_008450167.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 204 bits (518), Expect = 3.70e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. NCBI nr
Match: XP_011650608.1 (cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE8650204.1 hypothetical protein Csa_009645 [Cucumis sativus])

HSP 1 Score: 201 bits (510), Expect = 6.15e-65
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. NCBI nr
Match: XP_038905594.1 (cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida])

HSP 1 Score: 196 bits (498), Expect = 4.17e-63
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195 bits (495), Expect = 1.20e-62
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSN LRAALRGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6577328.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193 bits (491), Expect = 4.88e-62
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSN LRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of IVF0017308 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 140.6 bits (353), Expect = 6.8e-34
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS   RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]
BLAST of IVF0017308 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = 0 

Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS   RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PP          EFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWGPDGLFEVKHN 89

The following BLAST results are available for this feature:
BLAST of IVF0017308 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0709.6e-3368.69Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of IVF0017308 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BPM02.4e-50100.00cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0L3I01.7e-4897.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1[more]
A0A6J1ERW33.2e-4793.88cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366... [more]
A0A6J1J8L12.1e-4692.86cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1KMD37.8e-4690.82cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
BLAST of IVF0017308 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450167.13.70e-66100.00PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo][more]
XP_011650608.16.15e-6597.96cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE... [more]
XP_038905594.14.17e-6394.90cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida][more]
XP_023551866.11.20e-6294.90cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
XP_022929363.14.88e-6293.88cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG657... [more]
BLAST of IVF0017308 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37830.16.8e-3468.69cytochrome c oxidase-related [more]
AT4G37830.21.2e-2560.61cytochrome c oxidase-related [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001349Cytochrome c oxidase, subunit VIaPIRSFPIRSF000277COX_VIacoord: 1..98
e-value: 1.3E-21
score: 74.9
IPR001349Cytochrome c oxidase, subunit VIaPFAMPF02046COX6Acoord: 34..88
e-value: 3.1E-6
score: 27.6
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 1..98
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10Cytochrome c oxidase, subunit VIacoord: 29..98
e-value: 3.6E-15
score: 57.6
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 30..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..38
NoneNo IPR availablePANTHERPTHR11504:SF6CYTOCHROME C OXIDASE SUBUNIT 6A1-RELATEDcoord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017308.2IVF0017308.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0050790 regulation of catalytic activity
cellular_component GO:0005751 mitochondrial respiratory chain complex IV
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0030234 enzyme regulator activity