IVF0017271 (gene) Melon (IVF77) v1

Overview
NameIVF0017271
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTub domain-containing protein
Locationchr04: 10355046 .. 10355435 (+)
RNA-Seq ExpressionIVF0017271
SyntenyIVF0017271
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTCCAAAATTTCATCAAAGTTTTTCCCTCCTTTCATTCCCCTCCCAAATTTCAGAAACCCACTTCTGAAAATCATTCCCCTTCCAAATTTCAAACTCCCTTCTCTCATTGTCATCTCTCCCTATCTCTCTGATGCTCTTTTCTACTCACCATCTCTCTCTTTTGCCGTTTATCATGCCACGACCAATAGGTTGTGCACCCGTACACCGATGAGGAACCCCGAGAACGCTACCGCCCAGCCACCCCCTTATCGTTCAGCTTGTCGGACGACGAAAGCATGCCTAGCCGCACTGAAAGTTGAACCTCAAAGCTCCATTGGAAGTCTCTACCACAGGTTGCTCTCGACGATTGCCATAGTGACTGTGATTCGTGTCCTTGGTAGTTGA

mRNA sequence

ATGTGCTCCAAAATTTCATCAAAGTTTTTCCCTCCTTTCATTCCCCTCCCAAATTTCAGAAACCCACTTCTGAAAATCATTCCCCTTCCAAATTTCAAACTCCCTTCTCTCATTGTCATCTCTCCCTATCTCTCTGATGCTCTTTTCTACTCACCATCTCTCTCTTTTGCCGTTTATCATGCCACGACCAATAGGTTGTGCACCCGTACACCGATGAGGAACCCCGAGAACGCTACCGCCCAGCCACCCCCTTATCGTTCAGCTTGTCGGACGACGAAAGCATGCCTAGCCGCACTGAAAGTTGAACCTCAAAGCTCCATTGGAAGTCTCTACCACAGGTTGCTCTCGACGATTGCCATAGTGACTGTGATTCGTGTCCTTGGTAGTTGA

Coding sequence (CDS)

ATGTGCTCCAAAATTTCATCAAAGTTTTTCCCTCCTTTCATTCCCCTCCCAAATTTCAGAAACCCACTTCTGAAAATCATTCCCCTTCCAAATTTCAAACTCCCTTCTCTCATTGTCATCTCTCCCTATCTCTCTGATGCTCTTTTCTACTCACCATCTCTCTCTTTTGCCGTTTATCATGCCACGACCAATAGGTTGTGCACCCGTACACCGATGAGGAACCCCGAGAACGCTACCGCCCAGCCACCCCCTTATCGTTCAGCTTGTCGGACGACGAAAGCATGCCTAGCCGCACTGAAAGTTGAACCTCAAAGCTCCATTGGAAGTCTCTACCACAGGTTGCTCTCGACGATTGCCATAGTGACTGTGATTCGTGTCCTTGGTAGTTGA

Protein sequence

MCSKISSKFFPPFIPLPNFRNPLLKIIPLPNFKLPSLIVISPYLSDALFYSPSLSFAVYHATTNRLCTRTPMRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVIRVLGS
Homology
[Close]
BLAST of IVF0017271 vs. ExPASy TrEMBL
Match: A0A5A7UBI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold778G00180 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 65  RLCTRTPMRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVI 124
           +LCTRTPMRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVI
Sbjct: 147 QLCTRTPMRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVI 206

Query: 125 RVLGS 130
           RVLGS
Sbjct: 207 RVLGS 211

[Close]
BLAST of IVF0017271 vs. ExPASy TrEMBL
Match: A0A5A7T3H0 (Tub domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00470 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 72  MRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVIRVLGS 130
           MRN EN TAQPPP RSACRTTKA  AALKVEPQSSIGSLYHRLLSTIAIVTVIRVLG+
Sbjct: 1   MRNLENVTAQPPPCRSACRTTKARQAALKVEPQSSIGSLYHRLLSTIAIVTVIRVLGT 58

[Close]
BLAST of IVF0017271 vs. NCBI nr
Match: KAA0053092.1 (uncharacterized protein E6C27_scaffold778G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.44e-33
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 65  RLCTRTPMRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVI 124
           +LCTRTPMRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVI
Sbjct: 147 QLCTRTPMRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVI 206

Query: 125 RVLGS 129
           RVLGS
Sbjct: 207 RVLGS 211

[Close]
BLAST of IVF0017271 vs. NCBI nr
Match: KAA0037880.1 (uncharacterized protein E6C27_scaffold36G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 4.36e-22
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 72  MRNPENATAQPPPYRSACRTTKACLAALKVEPQSSIGSLYHRLLSTIAIVTVIRVLGS 129
           MRN EN TAQPPP RSACRTTKA  AALKVEPQSSIGSLYHRLLSTIAIVTVIRVLG+
Sbjct: 1   MRNLENVTAQPPPCRSACRTTKARQAALKVEPQSSIGSLYHRLLSTIAIVTVIRVLGT 58

The following BLAST results are available for this feature:
BLAST of IVF0017271 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0017271 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UBI06.9e-2698.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T3H01.0e-1689.66Tub domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
BLAST of IVF0017271 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053092.11.44e-3398.46uncharacterized protein E6C27_scaffold778G00180 [Cucumis melo var. makuwa][more]
KAA0037880.14.36e-2289.66uncharacterized protein E6C27_scaffold36G00470 [Cucumis melo var. makuwa][more]
BLAST of IVF0017271 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017271.1IVF0017271.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane