IVF0017253 (gene) Melon (IVF77) v1

Overview


Name	IVF0017253
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr08: 8490847 .. 8491379 (+)
RNA-Seq Expression	IVF0017253
Synteny	IVF0017253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAACCAGGACTTTTTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATATCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTACATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCCAAACTGGTTTCAAAACTGGTGGATGTATTTTGGACTCTCCGAGGAAATATTTCCGGTAGAAGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG

mRNA sequence

ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAACCAGGACTTTTTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATATCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTACATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG

Coding sequence (CDS)

ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAACCAGGACTTTTTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATATCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTACATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG

Protein sequence

MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSCSTFVPPFPTKYLFVTTFEDV

Homology

[Close]

BLAST of IVF0017253 vs. ExPASy TrEMBL
Match: A0A0A0LWK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385050 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.6e-70
Identity = 124/144 (86.11%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSV EVC Q+FPHGFNFLPEDLSKTRTFYE+ILVDSKSAEITH+PDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIF+VLTPSYWKQGMFVG++FS PFKPPSYNYRDYTKAWYI+FWLQAYNH
Sbjct: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120

Query: 121 SC--STFVPPFPTKYLFVTTFEDV 143
           SC  STF+P  PTKYL V++ +DV
Sbjct: 121 SCRSSTFIPSLPTKYLLVSSLKDV 144

[Close]

BLAST of IVF0017253 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.0e-66
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0017253 vs. ExPASy TrEMBL
Match: A0A5D3C4Q3 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00040 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.0e-66
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0017253 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.0e-66
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0017253 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.8e-66
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPKFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0017253 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (664), Expect = 3.60e-83
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0017253 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (664), Expect = 3.60e-83
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0017253 vs. NCBI nr
Match: KAA0041673.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK06294.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (664), Expect = 5.84e-83
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0017253 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (660), Expect = 1.45e-82
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPKFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0017253 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (659), Expect = 2.05e-82
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWL AYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNH 219

The following BLAST results are available for this feature:

BLAST of IVF0017253 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWK6	8.6e-70	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385050 PE=4 SV=1	[more]
A0A5A7UVN1	2.0e-66	99.17	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3C4Q3	2.0e-66	99.17	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7V6D1	2.0e-66	99.17	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VIK9	5.8e-66	98.35	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0017253 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063832.1	3.60e-83	99.17	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	3.60e-83	99.17	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0041673.1	5.84e-83	99.17	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK06294.1 Retrotransp...	[more]
KAA0068172.1	1.45e-82	98.35	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28077.1	2.05e-82	98.35	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0017253 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46249:SF31	BNAC08G47480D PROTEIN	coord: 4..125
None	No IPR available	PANTHER	PTHR46249	FAMILY NOT NAMED	coord: 4..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017253.1	IVF0017253.1	mRNA